Wall clock time and date at job start Mon Mar 30 2020 06:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35999 * 116.99879 * 2 1 4 4 C 1.38564 * 120.07316 * 359.97438 * 3 2 1 5 5 C 1.38239 * 119.99909 * 180.02562 * 4 3 2 6 6 C 1.38256 * 120.14454 * 359.71673 * 5 4 3 7 7 C 1.38244 * 120.14816 * 0.55568 * 6 5 4 8 8 C 1.50695 * 120.00285 * 179.72169 * 7 6 5 9 9 H 1.08992 * 109.47354 * 179.72886 * 8 7 6 10 10 C 1.50706 * 109.46984 * 299.72624 * 8 7 6 11 11 H 1.08007 * 119.99794 * 54.99302 * 10 8 7 12 12 C 1.37875 * 120.00154 * 235.26747 * 10 8 7 13 13 N 1.31509 * 119.99791 * 176.55165 * 12 10 8 14 14 Si 1.86798 * 119.99881 * 356.54887 * 12 10 8 15 15 H 1.48504 * 109.46931 * 85.34367 * 14 12 10 16 16 H 1.48498 * 109.47277 * 205.34415 * 14 12 10 17 17 H 1.48499 * 109.47455 * 325.35164 * 14 12 10 18 18 C 1.53004 * 109.47130 * 59.72762 * 8 7 6 19 19 C 1.52992 * 109.46989 * 61.15186 * 18 8 7 20 20 C 1.52999 * 109.47014 * 181.15288 * 18 8 7 21 21 C 1.38568 * 119.99481 * 359.45040 * 7 6 5 22 22 O 1.35995 * 120.06768 * 180.30016 * 21 7 6 23 23 H 1.08998 * 109.47414 * 299.99957 * 1 2 3 24 24 H 1.09004 * 109.46945 * 59.99876 * 1 2 3 25 25 H 1.09003 * 109.47151 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.99770 * 0.03792 * 4 3 2 27 27 H 1.07990 * 119.92847 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.92615 * 180.30610 * 6 5 4 29 29 H 0.96999 * 119.99914 * 180.02562 * 13 12 10 30 30 H 1.09002 * 109.46849 * 301.15171 * 18 8 7 31 31 H 1.09002 * 109.47337 * 60.00284 * 19 18 8 32 32 H 1.09000 * 109.46860 * 179.97438 * 19 18 8 33 33 H 1.09000 * 109.47590 * 299.99644 * 19 18 8 34 34 H 1.09008 * 109.47248 * 58.17057 * 20 18 8 35 35 H 1.09000 * 109.47007 * 178.16649 * 20 18 8 36 36 H 1.09002 * 109.47314 * 298.17174 * 20 18 8 37 37 H 0.96691 * 114.00368 * 90.00016 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9223 3.6057 -0.0011 6 6 3.3029 3.6798 0.0048 7 6 4.0603 2.5233 -0.0003 8 6 5.5649 2.6080 -0.0002 9 1 5.9853 1.6024 0.0003 10 6 6.0266 3.3449 -1.2310 11 1 5.6447 4.3325 -1.4442 12 6 6.9324 2.7563 -2.0878 13 7 7.2837 3.3704 -3.1963 14 14 7.6604 1.0866 -1.6739 15 1 6.7452 0.0167 -2.1462 16 1 8.9783 0.9416 -2.3428 17 1 7.8364 0.9738 -0.2037 18 6 6.0334 3.3572 1.2488 19 6 5.5893 2.5939 2.4981 20 6 7.5593 3.4683 1.2345 21 6 3.4359 1.2863 0.0001 22 8 4.1795 0.1477 0.0013 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2146 2.3196 -0.0003 27 1 1.3342 4.5114 -0.0019 28 1 3.7907 4.6434 0.0094 29 1 7.9206 2.9561 -3.7993 30 1 5.5966 4.3558 1.2587 31 1 6.0262 1.5953 2.4882 32 1 5.9235 3.1274 3.3879 33 1 4.5022 2.5148 2.5084 34 1 7.8777 3.9837 0.3283 35 1 7.8909 4.0303 2.1076 36 1 7.9965 2.4700 1.2574 37 1 4.3941 -0.1811 0.8849 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259741655.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:05 Heat of formation + Delta-G solvation = -91.547536 kcal Electronic energy + Delta-G solvation = -19135.666017 eV Core-core repulsion = 16263.267546 eV Total energy + Delta-G solvation = -2872.398470 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.38519 -39.25906 -37.62813 -36.82620 -34.30604 -31.87069 -30.53086 -29.13915 -28.08415 -27.50779 -24.85353 -23.36657 -22.40050 -20.40895 -19.43937 -19.06097 -18.18209 -17.14164 -16.80975 -16.30426 -16.14400 -15.72228 -15.12989 -15.01168 -14.82049 -14.62152 -14.02375 -13.78279 -13.26226 -13.13846 -13.05336 -12.92917 -12.67252 -12.33723 -12.12738 -12.03482 -11.94251 -11.79019 -11.62510 -11.35046 -11.05710 -10.85436 -10.60299 -9.33712 -8.97742 -8.26958 -6.26109 0.43261 0.57534 1.32511 1.40054 1.43741 2.36735 2.39543 2.82899 3.15408 3.41503 3.98227 4.15955 4.22962 4.34758 4.40308 4.42580 4.47550 4.51557 4.60468 4.73144 4.80003 4.92880 4.98560 5.05070 5.10733 5.20314 5.26248 5.35147 5.47770 5.57839 5.61237 5.66449 5.80210 5.85333 5.95830 6.36343 6.43020 6.78196 6.99055 7.37566 8.89342 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021994 B = 0.008523 C = 0.007882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.758550 B = 3284.457893 C = 3551.459047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.092 3.908 4 C -0.212 4.212 5 C -0.084 4.084 6 C -0.150 4.150 7 C -0.037 4.037 8 C 0.049 3.951 9 H 0.045 0.955 10 C -0.484 4.484 11 H 0.039 0.961 12 C 0.021 3.979 13 N -0.948 5.948 14 Si 0.924 3.076 15 H -0.283 1.283 16 H -0.294 1.294 17 H -0.233 1.233 18 C -0.082 4.082 19 C -0.139 4.139 20 C -0.136 4.136 21 C 0.034 3.966 22 O -0.500 6.500 23 H 0.070 0.930 24 H 0.059 0.941 25 H 0.117 0.883 26 H 0.159 0.841 27 H 0.153 0.847 28 H 0.117 0.883 29 H 0.262 0.738 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.040 0.960 35 H 0.064 0.936 36 H 0.040 0.960 37 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.998 -4.187 12.170 17.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.047 3.953 4 C -0.231 4.231 5 C -0.102 4.102 6 C -0.168 4.168 7 C -0.038 4.038 8 C 0.030 3.970 9 H 0.063 0.937 10 C -0.522 4.522 11 H 0.057 0.943 12 C -0.176 4.176 13 N -0.589 5.589 14 Si 0.750 3.250 15 H -0.209 1.209 16 H -0.220 1.220 17 H -0.156 1.156 18 C -0.100 4.100 19 C -0.196 4.196 20 C -0.193 4.193 21 C -0.011 4.011 22 O -0.310 6.310 23 H 0.089 0.911 24 H 0.078 0.922 25 H 0.135 0.865 26 H 0.176 0.824 27 H 0.171 0.829 28 H 0.135 0.865 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -11.839 -4.346 11.412 17.008 hybrid contribution 0.522 -0.511 -0.225 0.765 sum -11.317 -4.857 11.187 16.638 Atomic orbital electron populations 1.23348 0.76669 1.05384 1.02281 1.86095 1.23320 1.26392 1.88912 1.19503 0.91228 0.85725 0.98887 1.21285 1.00876 0.91051 1.09854 1.21229 0.93784 0.98168 0.97037 1.20920 0.94177 0.97752 1.03972 1.20567 0.97949 0.91593 0.93652 1.18301 0.87871 0.96801 0.94040 0.93666 1.21040 1.23161 1.01954 1.06051 0.94254 1.25749 0.97062 1.00388 0.94434 1.70026 1.35350 1.40899 1.12615 0.86119 0.77221 0.81102 0.80520 1.20901 1.22050 1.15591 1.21156 0.95767 0.98926 0.94196 1.21829 1.00607 1.00050 0.97134 1.21739 0.95885 1.00667 1.00988 1.17837 0.86827 0.86275 1.10188 1.84881 1.72373 1.39907 1.33826 0.91115 0.92188 0.86456 0.82395 0.82935 0.86502 0.92863 0.92458 0.93142 0.91480 0.93208 0.94081 0.91733 0.94086 0.75522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.33 -10.32 10.28 -79.67 -0.82 -11.14 16 3 C 0.09 3.18 6.70 22.57 0.15 3.33 16 4 C -0.21 -6.12 9.04 22.35 0.20 -5.92 16 5 C -0.08 -2.55 10.04 22.27 0.22 -2.33 16 6 C -0.15 -5.68 8.76 22.28 0.20 -5.48 16 7 C -0.04 -1.54 3.57 -19.79 -0.07 -1.62 16 8 C 0.05 2.23 1.46 -12.28 -0.02 2.21 16 9 H 0.05 2.14 3.58 -2.39 -0.01 2.13 16 10 C -0.48 -27.19 7.17 25.60 0.18 -27.01 16 11 H 0.04 2.43 7.91 -2.91 -0.02 2.41 16 12 C 0.02 1.21 5.46 84.65 0.46 1.68 16 13 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16 14 Si 0.92 46.49 26.74 68.60 1.83 48.32 16 15 H -0.28 -14.69 7.11 99.48 0.71 -13.98 16 16 H -0.29 -14.60 7.11 99.48 0.71 -13.90 16 17 H -0.23 -10.50 5.57 99.48 0.55 -9.94 16 18 C -0.08 -3.14 2.33 -10.80 -0.03 -3.17 16 19 C -0.14 -4.26 8.96 71.98 0.65 -3.61 16 20 C -0.14 -5.22 8.73 71.98 0.63 -4.59 16 21 C 0.03 1.36 6.69 22.57 0.15 1.51 16 22 O -0.50 -20.03 12.05 -79.63 -0.96 -20.99 16 23 H 0.07 1.06 7.66 -2.39 -0.02 1.05 16 24 H 0.06 1.05 7.66 -2.38 -0.02 1.03 16 25 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.16 3.29 6.30 -2.91 -0.02 3.27 16 27 H 0.15 3.48 8.06 -2.92 -0.02 3.46 16 28 H 0.12 4.51 7.46 -2.91 -0.02 4.48 16 29 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 30 H 0.06 2.22 7.33 -2.39 -0.02 2.20 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.05 1.49 7.25 -2.39 -0.02 1.48 16 34 H 0.04 1.83 7.11 -2.38 -0.02 1.81 16 35 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.04 1.55 6.98 -2.39 -0.02 1.54 16 37 H 0.39 11.64 9.06 -74.06 -0.67 10.97 16 Total: -1.00 -71.83 298.80 4.44 -67.38 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.25 Total: 19.87 kcal Atomic # 6 Polarization: -47.39 SS G_CDS: 3.84 Total: -43.55 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: 0.30 Total: -59.89 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -1.78 Total: -32.13 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.83 Total: 48.32 kcal Total: -71.83 4.44 -67.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259741655.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.167 kcal (2) G-P(sol) polarization free energy of solvation -71.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds