Wall clock time and date at job start Mon Mar 30 2020 06:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35990 * 117.00060 * 2 1 4 4 C 1.38570 * 120.07457 * 0.02562 * 3 2 1 5 5 C 1.38239 * 120.00063 * 180.02562 * 4 3 2 6 6 C 1.38254 * 120.14523 * 0.02661 * 5 4 3 7 7 C 1.38244 * 120.15044 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00303 * 180.02562 * 7 6 5 9 9 H 1.08994 * 109.47190 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46940 * 59.99597 * 8 7 6 11 11 H 1.07993 * 119.99967 * 298.31310 * 10 8 7 12 12 C 1.37878 * 119.99530 * 118.31382 * 10 8 7 13 13 N 1.31516 * 119.99764 * 186.44782 * 12 10 8 14 14 Si 1.86804 * 119.99920 * 6.44577 * 12 10 8 15 15 H 1.48497 * 109.47273 * 275.32706 * 14 12 10 16 16 H 1.48491 * 109.47321 * 35.33139 * 14 12 10 17 17 H 1.48506 * 109.46752 * 155.33126 * 14 12 10 18 18 C 1.53002 * 109.46985 * 300.00293 * 8 7 6 19 19 C 1.52999 * 109.47070 * 181.66385 * 18 8 7 20 20 C 1.53006 * 109.46869 * 301.65987 * 18 8 7 21 21 C 1.38567 * 119.99546 * 0.27615 * 7 6 5 22 22 O 1.35989 * 120.07043 * 179.72468 * 21 7 6 23 23 H 1.08998 * 109.47134 * 59.99954 * 1 2 3 24 24 H 1.08998 * 109.47107 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46760 * 299.99993 * 1 2 3 26 26 H 1.07995 * 119.99760 * 0.02562 * 4 3 2 27 27 H 1.07995 * 119.92912 * 179.97438 * 5 4 3 28 28 H 1.08011 * 119.92518 * 179.97438 * 6 5 4 29 29 H 0.96996 * 119.99682 * 179.97438 * 13 12 10 30 30 H 1.08999 * 109.47487 * 61.65932 * 18 8 7 31 31 H 1.08997 * 109.46880 * 59.76465 * 19 18 8 32 32 H 1.08994 * 109.47164 * 179.76656 * 19 18 8 33 33 H 1.08998 * 109.46751 * 299.76660 * 19 18 8 34 34 H 1.09007 * 109.47051 * 60.00165 * 20 18 8 35 35 H 1.09000 * 109.46771 * 179.97438 * 20 18 8 36 36 H 1.08994 * 109.47191 * 300.00682 * 20 18 8 37 37 H 0.96696 * 114.00184 * 90.00005 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6057 0.0000 6 6 3.3029 3.6798 -0.0016 7 6 4.0603 2.5233 -0.0022 8 6 5.5650 2.6079 -0.0034 9 1 5.9854 1.6023 -0.0032 10 6 6.0276 3.3455 1.2267 11 1 5.7313 4.3720 1.3841 12 6 6.8290 2.7097 2.1511 13 7 7.1285 3.3077 3.2835 14 14 7.4892 0.9989 1.7951 15 1 6.4737 -0.0137 2.1803 16 1 7.7869 0.8749 0.3456 17 1 8.7321 0.7755 2.5765 18 6 6.0327 3.3567 -1.2530 19 6 7.5617 3.4064 -1.2754 20 6 5.5277 2.6304 -2.5015 21 6 3.4359 1.2863 -0.0069 22 8 4.1795 0.1477 -0.0131 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 0.2146 2.3197 0.0014 27 1 1.3343 4.5115 0.0000 28 1 3.7908 4.6434 -0.0025 29 1 7.6920 2.8602 3.9339 30 1 5.6362 4.3719 -1.2380 31 1 7.9581 2.3911 -1.2863 32 1 7.8949 3.9362 -2.1677 33 1 7.9212 3.9273 -0.3880 34 1 4.4384 2.5950 -2.4856 35 1 5.8605 3.1641 -3.3917 36 1 5.9241 1.6152 -2.5165 37 1 4.3958 -0.1856 0.8684 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259741658.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:08 Heat of formation + Delta-G solvation = -71.703856 kcal Electronic energy + Delta-G solvation = -19151.156612 eV Core-core repulsion = 16279.618628 eV Total energy + Delta-G solvation = -2871.537984 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.99104 -37.86870 -36.07400 -35.30347 -32.29998 -30.30989 -29.21248 -27.45213 -26.93366 -25.99717 -23.02833 -21.94176 -20.94473 -18.84019 -17.89636 -17.14367 -16.77953 -15.76932 -15.52910 -14.85342 -14.39767 -14.17872 -13.75905 -13.56319 -13.22457 -12.92836 -12.35593 -12.27739 -11.86428 -11.69672 -11.63615 -11.39959 -10.92853 -10.88581 -10.73424 -10.64757 -10.30991 -10.23811 -9.78014 -9.69375 -9.44254 -9.00490 -8.57805 -7.83066 -7.59503 -6.14106 -4.11761 1.85029 2.00977 3.23670 3.35047 3.40152 3.55495 4.23356 4.36971 4.87016 5.10259 5.17808 5.23743 5.36319 5.49255 5.61380 5.76949 5.84495 5.92996 5.98116 6.03529 6.26297 6.38075 6.49184 6.61734 6.64214 6.69799 6.73365 6.83585 6.96726 7.14044 7.20543 7.26998 7.41098 7.48934 7.62969 7.72184 8.33649 8.46046 8.91354 9.48495 10.98354 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021294 B = 0.008773 C = 0.007977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.606077 B = 3190.988655 C = 3509.306321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.314 6.314 3 C 0.095 3.905 4 C -0.224 4.224 5 C -0.093 4.093 6 C -0.130 4.130 7 C -0.010 4.010 8 C 0.045 3.955 9 H 0.055 0.945 10 C -0.499 4.499 11 H 0.076 0.924 12 C 0.074 3.926 13 N -0.895 5.895 14 Si 0.871 3.129 15 H -0.277 1.277 16 H -0.258 1.258 17 H -0.291 1.291 18 C -0.078 4.078 19 C -0.136 4.136 20 C -0.147 4.147 21 C 0.056 3.944 22 O -0.486 6.486 23 H 0.050 0.950 24 H 0.093 0.907 25 H 0.051 0.949 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.125 0.875 29 H 0.264 0.736 30 H 0.060 0.940 31 H 0.042 0.958 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.039 0.961 36 H 0.047 0.953 37 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.559 -3.182 -6.975 12.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.050 3.950 4 C -0.243 4.243 5 C -0.112 4.112 6 C -0.148 4.148 7 C -0.011 4.011 8 C 0.026 3.974 9 H 0.073 0.927 10 C -0.536 4.536 11 H 0.094 0.906 12 C -0.129 4.129 13 N -0.532 5.532 14 Si 0.699 3.301 15 H -0.203 1.203 16 H -0.183 1.183 17 H -0.218 1.218 18 C -0.097 4.097 19 C -0.193 4.193 20 C -0.204 4.204 21 C 0.011 3.989 22 O -0.295 6.295 23 H 0.069 0.931 24 H 0.111 0.889 25 H 0.069 0.931 26 H 0.138 0.862 27 H 0.135 0.865 28 H 0.143 0.857 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -9.393 -3.334 -7.403 12.416 hybrid contribution 0.025 -0.854 0.634 1.064 sum -9.368 -4.188 -6.770 12.293 Atomic orbital electron populations 1.22958 0.79571 1.03149 1.00960 1.86115 1.20352 1.27070 1.89211 1.19439 0.91715 0.84321 0.99490 1.20853 0.99017 0.92156 1.12238 1.20863 0.94841 0.96370 0.99095 1.20831 0.92616 0.98652 1.02720 1.20777 0.99096 0.90307 0.90895 1.18405 0.86297 0.97966 0.94709 0.92655 1.20869 1.30023 0.99944 1.02753 0.90550 1.25076 0.95888 0.97392 0.94508 1.69902 1.37272 1.38588 1.07444 0.86984 0.78873 0.85123 0.79136 1.20299 1.18277 1.21770 1.21153 0.95544 0.98985 0.94048 1.21731 0.95931 1.00811 1.00806 1.21920 1.00577 1.00200 0.97700 1.17686 0.85553 0.86694 1.09001 1.84818 1.72016 1.39749 1.32915 0.93097 0.88867 0.93056 0.86247 0.86504 0.85659 0.92574 0.92201 0.93933 0.94799 0.91090 0.93396 0.94199 0.93374 0.76789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.31 -5.33 10.28 -34.21 -0.35 -5.68 16 3 C 0.10 1.77 6.70 -39.12 -0.26 1.51 16 4 C -0.22 -3.66 9.04 -39.46 -0.36 -4.02 16 5 C -0.09 -1.56 10.04 -39.58 -0.40 -1.96 16 6 C -0.13 -2.52 8.83 -39.57 -0.35 -2.87 16 7 C -0.01 -0.21 3.44 -104.50 -0.36 -0.56 16 8 C 0.05 1.03 1.49 -92.92 -0.14 0.89 16 9 H 0.06 1.32 3.56 -51.93 -0.18 1.13 16 10 C -0.50 -13.12 7.30 -34.44 -0.25 -13.37 16 11 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 12 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 13 N -0.90 -26.33 13.96 55.43 0.77 -25.56 16 14 Si 0.87 20.96 26.99 -169.99 -4.59 16.37 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.26 -6.03 6.11 56.52 0.35 -5.68 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 C -0.08 -1.59 2.29 -90.62 -0.21 -1.80 16 19 C -0.14 -2.69 8.96 37.16 0.33 -2.36 16 20 C -0.15 -2.67 8.92 37.16 0.33 -2.34 16 21 C 0.06 1.16 6.69 -39.12 -0.26 0.90 16 22 O -0.49 -10.03 12.05 -34.21 -0.41 -10.44 16 23 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 24 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 26 H 0.12 1.58 6.30 -52.49 -0.33 1.25 16 27 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 28 H 0.13 2.38 7.59 -52.48 -0.40 1.99 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.06 1.19 7.44 -51.93 -0.39 0.81 16 31 H 0.04 0.85 7.52 -51.93 -0.39 0.46 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 1.53 7.28 -51.93 -0.38 1.16 16 34 H 0.05 0.88 7.17 -51.93 -0.37 0.51 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.38 6.94 9.06 45.56 0.41 7.35 16 LS Contribution 300.82 15.07 4.53 4.53 Total: -1.00 -30.10 300.82 -5.62 -35.73 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -4.55 Total: 7.78 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: -1.03 Total: -22.72 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.77 Total: -25.56 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.76 Total: -16.12 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.59 Total: 16.37 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.10 -5.62 -35.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259741658.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.978 kcal (2) G-P(sol) polarization free energy of solvation -30.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds