Wall clock time and date at job start Mon Mar 30 2020 06:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35990 * 117.00060 * 2 1 4 4 C 1.38570 * 120.07457 * 0.02562 * 3 2 1 5 5 C 1.38239 * 120.00063 * 180.02562 * 4 3 2 6 6 C 1.38254 * 120.14523 * 0.02661 * 5 4 3 7 7 C 1.38244 * 120.15044 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00303 * 180.02562 * 7 6 5 9 9 H 1.08994 * 109.47190 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46940 * 59.99597 * 8 7 6 11 11 H 1.07993 * 119.99967 * 298.31310 * 10 8 7 12 12 C 1.37878 * 119.99530 * 118.31382 * 10 8 7 13 13 N 1.31516 * 119.99764 * 186.44782 * 12 10 8 14 14 Si 1.86804 * 119.99920 * 6.44577 * 12 10 8 15 15 H 1.48497 * 109.47273 * 275.32706 * 14 12 10 16 16 H 1.48491 * 109.47321 * 35.33139 * 14 12 10 17 17 H 1.48506 * 109.46752 * 155.33126 * 14 12 10 18 18 C 1.53002 * 109.46985 * 300.00293 * 8 7 6 19 19 C 1.52999 * 109.47070 * 181.66385 * 18 8 7 20 20 C 1.53006 * 109.46869 * 301.65987 * 18 8 7 21 21 C 1.38567 * 119.99546 * 0.27615 * 7 6 5 22 22 O 1.35989 * 120.07043 * 179.72468 * 21 7 6 23 23 H 1.08998 * 109.47134 * 59.99954 * 1 2 3 24 24 H 1.08998 * 109.47107 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46760 * 299.99993 * 1 2 3 26 26 H 1.07995 * 119.99760 * 0.02562 * 4 3 2 27 27 H 1.07995 * 119.92912 * 179.97438 * 5 4 3 28 28 H 1.08011 * 119.92518 * 179.97438 * 6 5 4 29 29 H 0.96996 * 119.99682 * 179.97438 * 13 12 10 30 30 H 1.08999 * 109.47487 * 61.65932 * 18 8 7 31 31 H 1.08997 * 109.46880 * 59.76465 * 19 18 8 32 32 H 1.08994 * 109.47164 * 179.76656 * 19 18 8 33 33 H 1.08998 * 109.46751 * 299.76660 * 19 18 8 34 34 H 1.09007 * 109.47051 * 60.00165 * 20 18 8 35 35 H 1.09000 * 109.46771 * 179.97438 * 20 18 8 36 36 H 1.08994 * 109.47191 * 300.00682 * 20 18 8 37 37 H 0.96696 * 114.00184 * 90.00005 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6057 0.0000 6 6 3.3029 3.6798 -0.0016 7 6 4.0603 2.5233 -0.0022 8 6 5.5650 2.6079 -0.0034 9 1 5.9854 1.6023 -0.0032 10 6 6.0276 3.3455 1.2267 11 1 5.7313 4.3720 1.3841 12 6 6.8290 2.7097 2.1511 13 7 7.1285 3.3077 3.2835 14 14 7.4892 0.9989 1.7951 15 1 6.4737 -0.0137 2.1803 16 1 7.7869 0.8749 0.3456 17 1 8.7321 0.7755 2.5765 18 6 6.0327 3.3567 -1.2530 19 6 7.5617 3.4064 -1.2754 20 6 5.5277 2.6304 -2.5015 21 6 3.4359 1.2863 -0.0069 22 8 4.1795 0.1477 -0.0131 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 0.2146 2.3197 0.0014 27 1 1.3343 4.5115 0.0000 28 1 3.7908 4.6434 -0.0025 29 1 7.6920 2.8602 3.9339 30 1 5.6362 4.3719 -1.2380 31 1 7.9581 2.3911 -1.2863 32 1 7.8949 3.9362 -2.1677 33 1 7.9212 3.9273 -0.3880 34 1 4.4384 2.5950 -2.4856 35 1 5.8605 3.1641 -3.3917 36 1 5.9241 1.6152 -2.5165 37 1 4.3958 -0.1856 0.8684 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259741658.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:07 Heat of formation + Delta-G solvation = -91.154113 kcal Electronic energy + Delta-G solvation = -19152.000038 eV Core-core repulsion = 16279.618628 eV Total energy + Delta-G solvation = -2872.381410 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.38358 -39.25691 -37.62859 -36.80629 -34.33414 -31.85771 -30.52885 -29.16575 -28.08649 -27.51874 -24.83841 -23.36286 -22.42270 -20.41921 -19.40204 -19.07926 -18.17691 -17.16565 -16.81166 -16.34079 -16.13933 -15.70008 -15.12932 -14.96066 -14.82519 -14.72263 -13.99499 -13.81723 -13.26738 -13.14245 -12.99132 -12.95629 -12.72429 -12.35899 -12.14210 -12.02216 -11.95667 -11.80996 -11.63803 -11.36339 -11.06983 -10.85299 -10.63141 -9.34285 -8.98080 -8.26603 -6.26134 0.41985 0.58030 1.31169 1.37067 1.47216 2.35011 2.39657 2.78784 3.12396 3.44954 3.98680 4.16440 4.20447 4.34281 4.38751 4.42436 4.45971 4.51272 4.60056 4.72713 4.78536 4.89809 4.97415 5.03232 5.08440 5.18683 5.24721 5.34741 5.45624 5.57115 5.58309 5.65311 5.77164 5.85282 5.93861 6.35564 6.40424 6.77671 6.88371 7.36972 8.89581 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021294 B = 0.008773 C = 0.007977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.606077 B = 3190.988655 C = 3509.306321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.093 3.907 4 C -0.213 4.213 5 C -0.083 4.083 6 C -0.149 4.149 7 C -0.034 4.034 8 C 0.048 3.952 9 H 0.045 0.955 10 C -0.486 4.486 11 H 0.040 0.960 12 C 0.021 3.979 13 N -0.945 5.945 14 Si 0.921 3.079 15 H -0.262 1.262 16 H -0.248 1.248 17 H -0.295 1.295 18 C -0.080 4.080 19 C -0.132 4.132 20 C -0.135 4.135 21 C 0.029 3.971 22 O -0.497 6.497 23 H 0.066 0.934 24 H 0.117 0.883 25 H 0.064 0.936 26 H 0.159 0.841 27 H 0.154 0.846 28 H 0.118 0.882 29 H 0.263 0.737 30 H 0.059 0.941 31 H 0.037 0.963 32 H 0.065 0.935 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.066 0.934 36 H 0.041 0.959 37 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.810 -4.014 -8.642 15.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.048 3.952 4 C -0.231 4.231 5 C -0.101 4.101 6 C -0.167 4.167 7 C -0.035 4.035 8 C 0.029 3.971 9 H 0.063 0.937 10 C -0.523 4.523 11 H 0.059 0.941 12 C -0.176 4.176 13 N -0.586 5.586 14 Si 0.747 3.253 15 H -0.187 1.187 16 H -0.172 1.172 17 H -0.222 1.222 18 C -0.099 4.099 19 C -0.190 4.190 20 C -0.193 4.193 21 C -0.016 4.016 22 O -0.306 6.306 23 H 0.085 0.915 24 H 0.136 0.864 25 H 0.082 0.918 26 H 0.176 0.824 27 H 0.171 0.829 28 H 0.136 0.864 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -11.670 -4.177 -9.095 15.374 hybrid contribution 0.545 -0.546 1.111 1.352 sum -11.125 -4.723 -7.985 14.485 Atomic orbital electron populations 1.23352 0.76632 1.05401 1.02302 1.86092 1.23359 1.26411 1.88888 1.19513 0.91217 0.85753 0.98761 1.21286 1.00883 0.91022 1.09929 1.21239 0.93789 0.98174 0.96907 1.20911 0.94152 0.97731 1.03937 1.20611 0.98071 0.91553 0.93279 1.18300 0.87895 0.96886 0.94048 0.93703 1.21011 1.28899 0.98575 1.03853 0.94141 1.25758 0.96545 1.00980 0.94343 1.70035 1.39192 1.40495 1.08844 0.86149 0.78381 0.81411 0.79351 1.18660 1.17229 1.22152 1.21115 0.95774 0.98883 0.94091 1.21690 0.95661 1.00568 1.01045 1.21790 1.00247 0.99795 0.97443 1.17883 0.86887 0.86306 1.10507 1.84783 1.72398 1.39912 1.33492 0.91494 0.86442 0.91764 0.82355 0.82865 0.86443 0.92760 0.92304 0.94368 0.91640 0.93808 0.93722 0.91487 0.93980 0.76309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.33 -10.45 10.28 -79.57 -0.82 -11.27 16 3 C 0.09 3.26 6.70 22.57 0.15 3.41 16 4 C -0.21 -6.19 9.04 22.35 0.20 -5.99 16 5 C -0.08 -2.53 10.04 22.27 0.22 -2.31 16 6 C -0.15 -5.67 8.83 22.27 0.20 -5.48 16 7 C -0.03 -1.45 3.44 -19.78 -0.07 -1.52 16 8 C 0.05 2.19 1.49 -12.28 -0.02 2.17 16 9 H 0.04 2.14 3.56 -2.39 -0.01 2.13 16 10 C -0.49 -26.50 7.30 25.60 0.19 -26.31 16 11 H 0.04 2.44 8.06 -2.91 -0.02 2.42 16 12 C 0.02 1.19 5.47 84.65 0.46 1.65 16 13 N -0.95 -57.94 13.96 21.45 0.30 -57.64 16 14 Si 0.92 43.98 26.99 68.60 1.85 45.83 16 15 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 16 H -0.25 -11.31 6.11 99.48 0.61 -10.70 16 17 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 18 C -0.08 -3.21 2.29 -10.79 -0.02 -3.23 16 19 C -0.13 -5.19 8.96 71.98 0.65 -4.54 16 20 C -0.14 -4.71 8.92 71.98 0.64 -4.07 16 21 C 0.03 1.19 6.69 22.57 0.15 1.34 16 22 O -0.50 -20.28 12.05 -79.57 -0.96 -21.24 16 23 H 0.07 1.08 7.66 -2.39 -0.02 1.06 16 24 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.06 1.08 7.66 -2.38 -0.02 1.06 16 26 H 0.16 3.32 6.30 -2.91 -0.02 3.31 16 27 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 28 H 0.12 4.54 7.59 -2.90 -0.02 4.51 16 29 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 30 H 0.06 2.35 7.44 -2.39 -0.02 2.33 16 31 H 0.04 1.50 7.52 -2.39 -0.02 1.48 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.04 1.92 7.28 -2.39 -0.02 1.90 16 34 H 0.04 1.57 7.17 -2.38 -0.02 1.55 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 37 H 0.38 14.01 9.06 -74.06 -0.67 13.34 16 Total: -1.00 -67.15 300.82 4.54 -62.61 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.30 Total: 25.13 kcal Atomic # 6 Polarization: -47.29 SS G_CDS: 3.86 Total: -43.43 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: 0.30 Total: -57.64 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -1.78 Total: -32.50 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.85 Total: 45.83 kcal Total: -67.15 4.54 -62.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259741658.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.540 kcal (2) G-P(sol) polarization free energy of solvation -67.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds