Wall clock time and date at job start Mon Mar 30 2020 06:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46737 * 2 1 4 4 C 1.53006 * 109.46914 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.47141 * 301.17218 * 4 3 2 6 6 C 1.50699 * 109.46889 * 61.17003 * 4 3 2 7 7 H 1.07995 * 120.00514 * 31.02193 * 6 4 3 8 8 C 1.37878 * 119.99752 * 210.74459 * 6 4 3 9 9 N 1.31519 * 120.00173 * 171.68311 * 8 6 4 10 10 Si 1.86808 * 120.00118 * 351.68518 * 8 6 4 11 11 H 1.48497 * 109.47081 * 84.50466 * 10 8 6 12 12 H 1.48499 * 109.47060 * 204.50427 * 10 8 6 13 13 H 1.48495 * 109.46650 * 324.50377 * 10 8 6 14 14 C 1.50698 * 109.47118 * 181.16926 * 4 3 2 15 15 C 1.38166 * 120.02819 * 115.29696 * 14 4 3 16 16 C 1.38245 * 120.05671 * 179.97438 * 15 14 4 17 17 C 1.38294 * 120.10993 * 0.02562 * 16 15 14 18 18 C 1.38118 * 120.05568 * 0.02562 * 17 16 15 19 19 C 1.38709 * 120.02627 * 295.01995 * 14 4 3 20 20 O 1.35904 * 120.06026 * 359.97438 * 19 14 4 21 21 C 1.42897 * 117.00233 * 184.75976 * 20 19 14 22 22 H 1.09003 * 109.46681 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47507 * 299.99984 * 1 2 3 24 24 H 1.08997 * 109.46940 * 60.00497 * 1 2 3 25 25 H 1.08997 * 109.47507 * 240.00016 * 2 1 3 26 26 H 1.08997 * 109.46940 * 119.99502 * 2 1 3 27 27 H 1.09000 * 109.47459 * 60.00163 * 3 2 1 28 28 H 1.08997 * 109.46999 * 299.99466 * 3 2 1 29 29 H 0.96703 * 113.99461 * 299.99834 * 5 4 3 30 30 H 0.96998 * 119.99911 * 179.97438 * 9 8 6 31 31 H 1.07996 * 119.97222 * 359.97082 * 15 14 4 32 32 H 1.07994 * 119.94685 * 179.97438 * 16 15 14 33 33 H 1.07996 * 119.96904 * 180.02562 * 17 16 15 34 34 H 1.08001 * 120.02659 * 179.97438 * 18 17 16 35 35 H 1.08997 * 109.46653 * 182.11696 * 21 20 19 36 36 H 1.08997 * 109.47196 * 302.11971 * 21 20 19 37 37 H 1.08996 * 109.46884 * 62.11981 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 8 4.0458 0.7454 1.1537 6 6 4.0728 0.7573 -1.2438 7 1 3.4975 0.8051 -2.1565 8 6 5.2701 0.0741 -1.2185 9 7 5.6310 -0.6587 -2.2493 10 14 6.3799 0.1893 0.2798 11 1 5.9441 -0.8021 1.2959 12 1 7.7817 -0.0947 -0.1195 13 1 6.2959 1.5562 0.8539 14 6 4.0722 2.8631 0.0296 15 6 4.7841 3.3226 1.1210 16 6 5.2456 4.6255 1.1480 17 6 4.9957 5.4722 0.0835 18 6 4.2836 5.0180 -1.0093 19 6 3.8251 3.7087 -1.0418 20 8 3.1304 3.2573 -2.1191 21 6 3.0033 4.1485 -3.2290 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.7601 1.1321 1.9928 30 1 6.4735 -1.1390 -2.2316 31 1 4.9802 2.6635 1.9537 32 1 5.8016 4.9829 2.0021 33 1 5.3576 6.4895 0.1068 34 1 4.0883 5.6798 -1.8402 35 1 2.3963 3.6797 -4.0035 36 1 2.5249 5.0713 -2.9010 37 1 3.9919 4.3740 -3.6289 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259840467.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:35 Heat of formation + Delta-G solvation = -66.473926 kcal Electronic energy + Delta-G solvation = -19556.566830 eV Core-core repulsion = 16685.255633 eV Total energy + Delta-G solvation = -2871.311197 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.77325 -37.41410 -36.27928 -33.31805 -32.18720 -30.87712 -29.56061 -27.84193 -26.69629 -25.22766 -22.70287 -21.45391 -20.59376 -19.47685 -17.61878 -17.10054 -15.94454 -15.24174 -15.10127 -14.95583 -14.30763 -14.00168 -13.85060 -13.56315 -12.95039 -12.75786 -12.32973 -12.13795 -12.08205 -11.63699 -11.38144 -11.07708 -10.94586 -10.59873 -10.52121 -10.42176 -10.36953 -9.98278 -9.78695 -9.47047 -9.39828 -8.74168 -8.30592 -8.00695 -7.34265 -5.94951 -3.99815 1.97084 2.10643 3.64273 3.69951 3.81058 3.98658 4.42958 4.73860 5.21685 5.31697 5.39077 5.48811 5.58496 5.62821 5.68345 5.76004 5.81694 5.89455 5.92546 6.06660 6.18375 6.25891 6.28351 6.47816 6.53585 6.65127 6.69127 6.89584 6.95777 7.01594 7.15853 7.21633 7.37369 7.45085 7.73506 8.14614 8.58879 8.67400 9.09110 9.69906 11.13270 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.015256 B = 0.012288 C = 0.009887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.957464 B = 2278.054546 C = 2831.403071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.119 4.119 4 C 0.267 3.733 5 O -0.549 6.549 6 C -0.487 4.487 7 H 0.090 0.910 8 C 0.077 3.923 9 N -0.897 5.897 10 Si 0.937 3.063 11 H -0.287 1.287 12 H -0.332 1.332 13 H -0.263 1.263 14 C -0.105 4.105 15 C -0.091 4.091 16 C -0.167 4.167 17 C -0.105 4.105 18 C -0.221 4.221 19 C 0.149 3.851 20 O -0.283 6.283 21 C 0.027 3.973 22 H 0.044 0.956 23 H 0.041 0.959 24 H 0.046 0.954 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.032 0.968 28 H 0.069 0.931 29 H 0.346 0.654 30 H 0.262 0.738 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.043 0.957 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.704 9.814 4.179 12.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.157 4.157 4 C 0.227 3.773 5 O -0.356 6.356 6 C -0.524 4.524 7 H 0.108 0.892 8 C -0.127 4.127 9 N -0.534 5.534 10 Si 0.773 3.227 11 H -0.214 1.214 12 H -0.264 1.264 13 H -0.189 1.189 14 C -0.107 4.107 15 C -0.109 4.109 16 C -0.185 4.185 17 C -0.124 4.124 18 C -0.240 4.240 19 C 0.103 3.897 20 O -0.195 6.195 21 C -0.069 4.069 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.097 0.903 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.087 0.913 29 H 0.194 0.806 30 H 0.071 0.929 31 H 0.140 0.860 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.111 0.889 36 H 0.062 0.938 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.432 9.130 3.582 11.211 hybrid contribution 0.659 0.765 0.902 1.354 sum -4.773 9.895 4.485 11.866 Atomic orbital electron populations 1.21823 0.97967 1.00351 1.00535 1.21335 0.92738 0.97341 1.03324 1.22051 0.96861 0.96599 1.00175 1.18192 0.89708 0.84067 0.85344 1.86306 1.75575 1.57815 1.15880 1.20568 1.06204 1.31844 0.93738 0.89169 1.25048 0.97871 0.93331 0.96423 1.69970 1.22814 1.29332 1.31262 0.85811 0.75178 0.79610 0.82119 1.21448 1.26441 1.18917 1.20800 1.00218 0.97752 0.91892 1.20864 0.97392 0.94874 0.97816 1.20858 1.03901 0.94551 0.99178 1.20653 0.98987 0.98922 0.93810 1.21102 1.06433 0.95532 1.00940 1.18662 0.92425 0.91142 0.87450 1.86357 1.68824 1.41085 1.23263 1.22945 1.01332 0.93930 0.88702 0.93677 0.93980 0.93440 0.90344 0.92549 0.94895 0.91258 0.80641 0.92928 0.85957 0.87135 0.87066 0.86424 0.88911 0.93846 0.93273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.91 37.16 0.37 -1.99 16 2 C -0.11 -2.14 5.55 -26.73 -0.15 -2.29 16 3 C -0.12 -2.38 4.26 -26.73 -0.11 -2.49 16 4 C 0.27 6.04 0.39 -92.92 -0.04 6.00 16 5 O -0.55 -12.08 6.60 -35.23 -0.23 -12.31 16 6 C -0.49 -13.36 6.30 -34.44 -0.22 -13.58 16 7 H 0.09 2.70 7.55 -52.49 -0.40 2.30 16 8 C 0.08 2.25 5.46 -17.82 -0.10 2.15 16 9 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 10 Si 0.94 24.56 24.68 -169.99 -4.20 20.36 16 11 H -0.29 -7.59 7.08 56.52 0.40 -7.19 16 12 H -0.33 -9.07 7.11 56.52 0.40 -8.66 16 13 H -0.26 -6.42 4.27 56.52 0.24 -6.18 16 14 C -0.11 -2.25 4.26 -104.47 -0.45 -2.70 16 15 C -0.09 -1.77 7.40 -39.61 -0.29 -2.06 16 16 C -0.17 -2.86 10.04 -39.56 -0.40 -3.26 16 17 C -0.11 -1.73 10.04 -39.60 -0.40 -2.13 16 18 C -0.22 -3.88 9.06 -39.43 -0.36 -4.23 16 19 C 0.15 3.05 6.28 -39.21 -0.25 2.80 16 20 O -0.28 -5.74 7.02 -19.44 -0.14 -5.87 16 21 C 0.03 0.40 9.84 101.05 0.99 1.39 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.08 1.76 7.25 -51.93 -0.38 1.38 16 26 H 0.06 1.10 7.65 -51.93 -0.40 0.71 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.43 6.58 -51.93 -0.34 1.09 16 29 H 0.35 6.01 7.87 45.56 0.36 6.37 16 30 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 31 H 0.12 2.23 5.94 -52.49 -0.31 1.91 16 32 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.12 1.74 6.29 -52.49 -0.33 1.41 16 35 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.04 0.54 7.31 -51.93 -0.38 0.16 16 37 H 0.05 0.72 7.99 -51.93 -0.41 0.30 16 LS Contribution 289.08 15.07 4.36 4.36 Total: -1.00 -32.36 289.08 -5.67 -38.02 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -4.85 Total: 4.93 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -1.39 Total: -22.37 kcal Atomic # 7 Polarization: -27.89 SS G_CDS: 0.77 Total: -27.12 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.37 Total: -18.18 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -4.20 Total: 20.36 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.36 -5.67 -38.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259840467.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.449 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds