Wall clock time and date at job start Mon Mar 30 2020 06:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46737 * 2 1 4 4 C 1.53006 * 109.46914 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.47141 * 301.17218 * 4 3 2 6 6 C 1.50699 * 109.46889 * 61.17003 * 4 3 2 7 7 H 1.07995 * 120.00514 * 31.02193 * 6 4 3 8 8 C 1.37878 * 119.99752 * 210.74459 * 6 4 3 9 9 N 1.31519 * 120.00173 * 171.68311 * 8 6 4 10 10 Si 1.86808 * 120.00118 * 351.68518 * 8 6 4 11 11 H 1.48497 * 109.47081 * 84.50466 * 10 8 6 12 12 H 1.48499 * 109.47060 * 204.50427 * 10 8 6 13 13 H 1.48495 * 109.46650 * 324.50377 * 10 8 6 14 14 C 1.50698 * 109.47118 * 181.16926 * 4 3 2 15 15 C 1.38166 * 120.02819 * 115.29696 * 14 4 3 16 16 C 1.38245 * 120.05671 * 179.97438 * 15 14 4 17 17 C 1.38294 * 120.10993 * 0.02562 * 16 15 14 18 18 C 1.38118 * 120.05568 * 0.02562 * 17 16 15 19 19 C 1.38709 * 120.02627 * 295.01995 * 14 4 3 20 20 O 1.35904 * 120.06026 * 359.97438 * 19 14 4 21 21 C 1.42897 * 117.00233 * 184.75976 * 20 19 14 22 22 H 1.09003 * 109.46681 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47507 * 299.99984 * 1 2 3 24 24 H 1.08997 * 109.46940 * 60.00497 * 1 2 3 25 25 H 1.08997 * 109.47507 * 240.00016 * 2 1 3 26 26 H 1.08997 * 109.46940 * 119.99502 * 2 1 3 27 27 H 1.09000 * 109.47459 * 60.00163 * 3 2 1 28 28 H 1.08997 * 109.46999 * 299.99466 * 3 2 1 29 29 H 0.96703 * 113.99461 * 299.99834 * 5 4 3 30 30 H 0.96998 * 119.99911 * 179.97438 * 9 8 6 31 31 H 1.07996 * 119.97222 * 359.97082 * 15 14 4 32 32 H 1.07994 * 119.94685 * 179.97438 * 16 15 14 33 33 H 1.07996 * 119.96904 * 180.02562 * 17 16 15 34 34 H 1.08001 * 120.02659 * 179.97438 * 18 17 16 35 35 H 1.08997 * 109.46653 * 182.11696 * 21 20 19 36 36 H 1.08997 * 109.47196 * 302.11971 * 21 20 19 37 37 H 1.08996 * 109.46884 * 62.11981 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 8 4.0458 0.7454 1.1537 6 6 4.0728 0.7573 -1.2438 7 1 3.4975 0.8051 -2.1565 8 6 5.2701 0.0741 -1.2185 9 7 5.6310 -0.6587 -2.2493 10 14 6.3799 0.1893 0.2798 11 1 5.9441 -0.8021 1.2959 12 1 7.7817 -0.0947 -0.1195 13 1 6.2959 1.5562 0.8539 14 6 4.0722 2.8631 0.0296 15 6 4.7841 3.3226 1.1210 16 6 5.2456 4.6255 1.1480 17 6 4.9957 5.4722 0.0835 18 6 4.2836 5.0180 -1.0093 19 6 3.8251 3.7087 -1.0418 20 8 3.1304 3.2573 -2.1191 21 6 3.0033 4.1485 -3.2290 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.7601 1.1321 1.9928 30 1 6.4735 -1.1390 -2.2316 31 1 4.9802 2.6635 1.9537 32 1 5.8016 4.9829 2.0021 33 1 5.3576 6.4895 0.1068 34 1 4.0883 5.6798 -1.8402 35 1 2.3963 3.6797 -4.0035 36 1 2.5249 5.0713 -2.9010 37 1 3.9919 4.3740 -3.6289 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259840467.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:34 Heat of formation + Delta-G solvation = -88.770910 kcal Electronic energy + Delta-G solvation = -19557.533700 eV Core-core repulsion = 16685.255633 eV Total energy + Delta-G solvation = -2872.278067 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.23059 -39.00140 -37.72101 -34.90408 -34.31455 -32.41217 -30.93840 -29.40977 -27.95157 -27.11532 -24.26413 -22.82512 -22.06205 -21.22032 -19.12735 -19.02974 -17.51647 -16.85326 -16.66816 -16.36576 -16.00128 -15.58421 -15.22421 -15.02967 -14.50563 -14.43177 -14.11139 -13.82547 -13.49563 -13.06630 -12.83808 -12.53797 -12.42075 -12.38239 -12.08921 -11.97083 -11.90714 -11.65436 -11.58580 -11.20652 -11.16187 -10.66863 -10.30617 -9.47623 -8.79254 -8.18092 -6.21976 0.57222 0.71576 1.51966 1.61070 1.72373 2.59376 2.67542 3.02897 3.17809 3.89320 4.00063 4.13119 4.22062 4.33085 4.36157 4.46028 4.47227 4.50093 4.71060 4.75105 4.76585 4.81256 4.90749 5.00461 5.11232 5.15873 5.26651 5.40224 5.48518 5.58573 5.62541 5.73818 5.74584 5.84493 6.09917 6.45809 6.71050 6.81845 7.18292 7.53180 8.94285 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.015256 B = 0.012288 C = 0.009887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.957464 B = 2278.054546 C = 2831.403071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.111 4.111 4 C 0.270 3.730 5 O -0.563 6.563 6 C -0.466 4.466 7 H 0.049 0.951 8 C 0.014 3.986 9 N -0.952 5.952 10 Si 0.993 3.007 11 H -0.291 1.291 12 H -0.352 1.352 13 H -0.233 1.233 14 C -0.139 4.139 15 C -0.102 4.102 16 C -0.168 4.168 17 C -0.097 4.097 18 C -0.223 4.223 19 C 0.125 3.875 20 O -0.318 6.318 21 C 0.019 3.981 22 H 0.056 0.944 23 H 0.064 0.936 24 H 0.048 0.952 25 H 0.034 0.966 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.371 0.629 30 H 0.257 0.743 31 H 0.131 0.869 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.143 0.857 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.180 12.774 6.406 15.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.145 4.145 3 C -0.149 4.149 4 C 0.230 3.770 5 O -0.374 6.374 6 C -0.504 4.504 7 H 0.067 0.933 8 C -0.183 4.183 9 N -0.593 5.593 10 Si 0.828 3.172 11 H -0.218 1.218 12 H -0.286 1.286 13 H -0.157 1.157 14 C -0.141 4.141 15 C -0.120 4.120 16 C -0.186 4.186 17 C -0.115 4.115 18 C -0.241 4.241 19 C 0.079 3.921 20 O -0.231 6.231 21 C -0.075 4.075 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.222 0.778 30 H 0.065 0.935 31 H 0.149 0.851 32 H 0.161 0.839 33 H 0.168 0.832 34 H 0.161 0.839 35 H 0.121 0.879 36 H 0.090 0.910 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.942 12.131 5.839 14.716 hybrid contribution 0.695 -0.025 0.180 0.718 sum -5.246 12.105 6.019 14.501 Atomic orbital electron populations 1.21733 0.94767 1.01581 1.01714 1.21257 0.95610 0.96648 1.00989 1.21941 0.95230 0.96849 1.00868 1.17924 0.90972 0.84562 0.83542 1.86110 1.75775 1.58505 1.16966 1.20692 1.04680 1.30390 0.94619 0.93313 1.25835 0.99755 0.93824 0.98852 1.70121 1.23419 1.32004 1.33719 0.84927 0.72289 0.80880 0.79098 1.21846 1.28639 1.15712 1.20623 1.02473 0.97102 0.93865 1.21070 0.97065 0.96336 0.97497 1.21265 1.03259 0.93588 1.00448 1.21169 0.97110 1.00572 0.92603 1.21455 1.05766 0.94632 1.02269 1.18983 0.93245 0.92437 0.87421 1.86297 1.69123 1.43320 1.24403 1.23195 1.01929 0.94658 0.87758 0.92517 0.91694 0.93285 0.94734 0.92761 0.92129 0.92376 0.77805 0.93511 0.85084 0.83871 0.83173 0.83887 0.87889 0.90956 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 9.91 71.98 0.71 -3.51 16 2 C -0.11 -4.19 5.55 30.59 0.17 -4.02 16 3 C -0.11 -4.38 4.26 30.60 0.13 -4.25 16 4 C 0.27 12.14 0.39 -12.29 0.00 12.13 16 5 O -0.56 -24.03 6.60 -148.98 -0.98 -25.02 16 6 C -0.47 -26.55 6.30 25.60 0.16 -26.39 16 7 H 0.05 3.11 7.55 -2.91 -0.02 3.09 16 8 C 0.01 0.85 5.46 84.65 0.46 1.32 16 9 N -0.95 -62.38 13.96 21.45 0.30 -62.09 16 10 Si 0.99 51.59 24.68 68.60 1.69 53.28 16 11 H -0.29 -15.06 7.08 99.48 0.70 -14.35 16 12 H -0.35 -19.25 7.11 99.48 0.71 -18.55 16 13 H -0.23 -10.74 4.27 99.48 0.42 -10.32 16 14 C -0.14 -5.75 4.26 -19.77 -0.08 -5.83 16 15 C -0.10 -3.61 7.40 22.25 0.16 -3.44 16 16 C -0.17 -4.96 10.04 22.28 0.22 -4.74 16 17 C -0.10 -2.70 10.04 22.25 0.22 -2.48 16 18 C -0.22 -7.06 9.06 22.37 0.20 -6.86 16 19 C 0.12 4.93 6.28 22.51 0.14 5.07 16 20 O -0.32 -12.94 7.02 -92.47 -0.65 -13.59 16 21 C 0.02 0.56 9.84 113.37 1.12 1.68 16 22 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 24 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.03 1.62 7.25 -2.39 -0.02 1.60 16 26 H 0.05 2.10 7.65 -2.39 -0.02 2.08 16 27 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.06 2.42 6.58 -2.39 -0.02 2.40 16 29 H 0.37 11.89 7.87 -74.05 -0.58 11.30 16 30 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 31 H 0.13 4.28 5.94 -2.91 -0.02 4.26 16 32 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 33 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 34 H 0.14 3.67 6.29 -2.91 -0.02 3.65 16 35 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.07 1.64 7.31 -2.39 -0.02 1.62 16 37 H 0.05 1.40 7.99 -2.39 -0.02 1.38 16 Total: -1.00 -73.81 289.08 4.17 -69.63 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.19 Total: 19.10 kcal Atomic # 6 Polarization: -44.94 SS G_CDS: 3.62 Total: -41.32 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: 0.30 Total: -62.09 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -1.63 Total: -38.61 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 1.69 Total: 53.28 kcal Total: -73.81 4.17 -69.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259840467.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.138 kcal (2) G-P(sol) polarization free energy of solvation -73.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds