Wall clock time and date at job start Mon Mar 30 2020 06:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47190 * 2 1 4 4 C 1.52998 * 109.46887 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.47359 * 65.00519 * 4 3 2 6 6 C 1.50702 * 109.47381 * 305.00118 * 4 3 2 7 7 H 1.07998 * 119.99857 * 114.54970 * 6 4 3 8 8 C 1.37878 * 120.00108 * 294.55270 * 6 4 3 9 9 N 1.31511 * 119.99746 * 5.10388 * 8 6 4 10 10 Si 1.86797 * 120.00079 * 185.10590 * 8 6 4 11 11 H 1.48504 * 109.47076 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47137 * 119.99521 * 10 8 6 13 13 H 1.48499 * 109.47162 * 239.99866 * 10 8 6 14 14 C 1.50705 * 109.46826 * 185.00185 * 4 3 2 15 15 C 1.38163 * 120.02767 * 356.29499 * 14 4 3 16 16 C 1.38246 * 120.05223 * 179.97438 * 15 14 4 17 17 C 1.38287 * 120.11468 * 0.03187 * 16 15 14 18 18 C 1.38130 * 120.05295 * 359.97438 * 17 16 15 19 19 C 1.38718 * 120.02511 * 176.59571 * 14 4 3 20 20 O 1.35896 * 120.05890 * 359.97438 * 19 14 4 21 21 C 1.42898 * 117.00334 * 185.29631 * 20 19 14 22 22 H 1.08996 * 109.47324 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47284 * 299.99998 * 1 2 3 24 24 H 1.09008 * 109.46838 * 59.99654 * 1 2 3 25 25 H 1.09007 * 109.46829 * 240.00160 * 2 1 3 26 26 H 1.08995 * 109.46867 * 120.00144 * 2 1 3 27 27 H 1.08997 * 109.47006 * 59.99831 * 3 2 1 28 28 H 1.09003 * 109.47116 * 300.00110 * 3 2 1 29 29 H 0.96697 * 114.00091 * 59.99334 * 5 4 3 30 30 H 0.97003 * 120.00055 * 184.99980 * 9 8 6 31 31 H 1.07993 * 119.97365 * 0.02562 * 15 14 4 32 32 H 1.08001 * 119.94373 * 180.02562 * 16 15 14 33 33 H 1.08001 * 119.97282 * 180.02562 * 17 16 15 34 34 H 1.07998 * 120.02319 * 180.02562 * 18 17 16 35 35 H 1.08996 * 109.47320 * 183.84241 * 21 20 19 36 36 H 1.09009 * 109.46696 * 303.84080 * 21 20 19 37 37 H 1.09003 * 109.47162 * 63.83659 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 8 4.0469 0.8730 -1.2201 6 6 4.0719 0.6276 1.1648 7 1 4.6183 -0.2870 0.9881 8 6 3.8334 1.0498 2.4555 9 7 3.0833 2.1078 2.6733 10 14 4.5759 0.1190 3.8949 11 1 5.3730 -1.0259 3.3857 12 1 5.4556 1.0287 4.6718 13 1 3.4887 -0.3863 4.7713 14 6 4.0723 2.8579 0.1245 15 6 3.1773 3.9104 0.1385 16 6 3.6375 5.2090 0.2527 17 6 4.9941 5.4581 0.3525 18 6 5.8929 4.4093 0.3388 19 6 5.4340 3.1055 0.2183 20 8 6.3166 2.0723 0.1992 21 6 7.6927 2.3905 0.4165 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 1.6767 1.9563 0.8899 28 1 1.6767 1.9564 -0.8900 29 1 3.7619 1.3473 -2.0131 30 1 2.9745 2.4479 3.5752 31 1 2.1174 3.7184 0.0610 32 1 2.9364 6.0304 0.2638 33 1 5.3511 6.4735 0.4420 34 1 6.9522 4.6044 0.4172 35 1 8.2955 1.4889 0.3083 36 1 8.0139 3.1323 -0.3148 37 1 7.8182 2.7931 1.4216 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259840468.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:37 Heat of formation + Delta-G solvation = -64.787433 kcal Electronic energy + Delta-G solvation = -19614.202761 eV Core-core repulsion = 16742.964696 eV Total energy + Delta-G solvation = -2871.238065 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.37584 -37.04026 -35.89603 -33.14592 -32.23499 -30.37066 -29.13959 -27.44097 -26.36803 -25.09571 -22.59201 -21.30428 -20.32854 -19.42487 -17.19038 -16.22076 -15.72732 -14.97047 -14.79780 -14.59954 -14.32580 -13.90751 -13.51615 -13.05701 -12.94486 -12.73337 -12.31113 -11.74217 -11.48305 -11.29264 -11.01170 -10.88181 -10.79142 -10.71192 -10.51327 -10.28385 -10.12814 -10.06091 -9.91708 -9.39285 -8.80193 -8.69277 -8.22186 -7.83178 -7.06894 -5.97076 -3.97944 2.35110 2.46286 3.31331 3.39686 3.45416 4.27631 4.44928 4.78983 5.32114 5.54749 5.64936 5.70097 5.78625 5.89642 5.94672 6.01313 6.02193 6.09927 6.17210 6.30709 6.49450 6.57097 6.61879 6.69458 6.89522 6.96103 7.05097 7.14970 7.28260 7.48014 7.54912 7.65415 7.72410 7.83970 7.97097 8.33086 8.50458 8.93627 9.21311 9.64933 11.07336 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.016328 B = 0.011914 C = 0.009362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.401195 B = 2349.601337 C = 2990.249202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 C -0.132 4.132 4 C 0.291 3.709 5 O -0.560 6.560 6 C -0.470 4.470 7 H 0.063 0.937 8 C 0.067 3.933 9 N -0.881 5.881 10 Si 0.889 3.111 11 H -0.272 1.272 12 H -0.287 1.287 13 H -0.286 1.286 14 C -0.067 4.067 15 C -0.063 4.063 16 C -0.172 4.172 17 C -0.107 4.107 18 C -0.232 4.232 19 C 0.150 3.850 20 O -0.275 6.275 21 C 0.026 3.974 22 H 0.039 0.961 23 H 0.047 0.953 24 H 0.039 0.961 25 H 0.045 0.955 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.018 0.982 29 H 0.342 0.658 30 H 0.258 0.742 31 H 0.120 0.880 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.041 0.959 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.605 3.611 -4.565 6.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.141 4.141 3 C -0.170 4.170 4 C 0.252 3.748 5 O -0.362 6.362 6 C -0.508 4.508 7 H 0.082 0.918 8 C -0.135 4.135 9 N -0.519 5.519 10 Si 0.717 3.283 11 H -0.197 1.197 12 H -0.213 1.213 13 H -0.212 1.212 14 C -0.069 4.069 15 C -0.082 4.082 16 C -0.191 4.191 17 C -0.125 4.125 18 C -0.251 4.251 19 C 0.104 3.896 20 O -0.187 6.187 21 C -0.070 4.070 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.114 0.886 28 H 0.037 0.963 29 H 0.185 0.815 30 H 0.069 0.931 31 H 0.138 0.862 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.107 0.893 36 H 0.059 0.941 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.727 3.026 -3.992 5.299 hybrid contribution 0.416 0.518 0.859 1.086 sum 2.142 3.544 -3.133 5.193 Atomic orbital electron populations 1.21818 0.98429 0.99793 1.00529 1.21280 0.92430 0.98362 1.02020 1.22264 0.98345 0.95968 1.00430 1.17759 0.88966 0.85534 0.82568 1.86668 1.77622 1.56638 1.15268 1.20593 1.34117 1.07901 0.88160 0.91833 1.24723 0.94854 0.95628 0.98293 1.69913 1.37167 1.23707 1.21099 0.86568 0.79051 0.80036 0.82636 1.19692 1.21290 1.21213 1.20328 0.89381 0.98146 0.99017 1.20873 0.99211 0.91281 0.96794 1.20820 0.94981 0.96721 1.06545 1.20555 0.93383 0.97261 1.01304 1.21017 0.99171 0.92776 1.12088 1.18828 0.90112 0.85519 0.95107 1.86427 1.15053 1.31265 1.85964 1.22897 0.82913 1.01512 0.99660 0.94229 0.93344 0.94183 0.93585 0.90949 0.88614 0.96291 0.81533 0.93144 0.86194 0.87703 0.87732 0.87170 0.89345 0.94060 0.93852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.91 37.16 0.37 -2.25 16 2 C -0.10 -2.18 5.51 -26.73 -0.15 -2.33 16 3 C -0.13 -2.95 2.92 -26.73 -0.08 -3.02 16 4 C 0.29 7.03 0.43 -92.92 -0.04 6.99 16 5 O -0.56 -13.01 12.17 -35.46 -0.43 -13.44 16 6 C -0.47 -12.61 5.45 -34.44 -0.19 -12.80 16 7 H 0.06 1.82 7.82 -52.49 -0.41 1.41 16 8 C 0.07 1.78 5.13 -17.82 -0.09 1.69 16 9 N -0.88 -23.66 10.26 55.43 0.57 -23.09 16 10 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 C -0.07 -1.58 3.64 -104.47 -0.38 -1.96 16 15 C -0.06 -1.37 8.62 -39.61 -0.34 -1.71 16 16 C -0.17 -3.34 10.04 -39.56 -0.40 -3.74 16 17 C -0.11 -2.00 10.04 -39.60 -0.40 -2.40 16 18 C -0.23 -4.63 9.07 -39.43 -0.36 -4.99 16 19 C 0.15 3.42 6.40 -39.22 -0.25 3.17 16 20 O -0.28 -6.25 8.69 -19.65 -0.17 -6.42 16 21 C 0.03 0.45 9.87 101.05 1.00 1.44 16 22 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 25 H 0.05 0.96 7.82 -51.92 -0.41 0.55 16 26 H 0.07 1.70 7.07 -51.93 -0.37 1.34 16 27 H 0.10 2.34 5.68 -51.93 -0.30 2.05 16 28 H 0.02 0.38 7.65 -51.93 -0.40 -0.02 16 29 H 0.34 6.58 9.04 45.56 0.41 6.99 16 30 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 31 H 0.12 2.50 5.91 -52.49 -0.31 2.19 16 32 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.11 1.91 6.28 -52.49 -0.33 1.58 16 35 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.04 0.60 7.20 -51.92 -0.37 0.23 16 37 H 0.04 0.71 8.06 -51.93 -0.42 0.30 16 LS Contribution 298.57 15.07 4.50 4.50 Total: -1.00 -29.30 298.57 -6.43 -35.73 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -4.57 Total: 8.17 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: -1.30 Total: -21.90 kcal Atomic # 7 Polarization: -23.66 SS G_CDS: 0.57 Total: -23.09 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.60 Total: -19.86 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.30 -6.43 -35.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259840468.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.060 kcal (2) G-P(sol) polarization free energy of solvation -29.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds