Wall clock time and date at job start Mon Mar 30 2020 06:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47190 * 2 1 4 4 C 1.52998 * 109.46887 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.47359 * 65.00519 * 4 3 2 6 6 C 1.50702 * 109.47381 * 305.00118 * 4 3 2 7 7 H 1.07998 * 119.99857 * 114.54970 * 6 4 3 8 8 C 1.37878 * 120.00108 * 294.55270 * 6 4 3 9 9 N 1.31511 * 119.99746 * 5.10388 * 8 6 4 10 10 Si 1.86797 * 120.00079 * 185.10590 * 8 6 4 11 11 H 1.48504 * 109.47076 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47137 * 119.99521 * 10 8 6 13 13 H 1.48499 * 109.47162 * 239.99866 * 10 8 6 14 14 C 1.50705 * 109.46826 * 185.00185 * 4 3 2 15 15 C 1.38163 * 120.02767 * 356.29499 * 14 4 3 16 16 C 1.38246 * 120.05223 * 179.97438 * 15 14 4 17 17 C 1.38287 * 120.11468 * 0.03187 * 16 15 14 18 18 C 1.38130 * 120.05295 * 359.97438 * 17 16 15 19 19 C 1.38718 * 120.02511 * 176.59571 * 14 4 3 20 20 O 1.35896 * 120.05890 * 359.97438 * 19 14 4 21 21 C 1.42898 * 117.00334 * 185.29631 * 20 19 14 22 22 H 1.08996 * 109.47324 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47284 * 299.99998 * 1 2 3 24 24 H 1.09008 * 109.46838 * 59.99654 * 1 2 3 25 25 H 1.09007 * 109.46829 * 240.00160 * 2 1 3 26 26 H 1.08995 * 109.46867 * 120.00144 * 2 1 3 27 27 H 1.08997 * 109.47006 * 59.99831 * 3 2 1 28 28 H 1.09003 * 109.47116 * 300.00110 * 3 2 1 29 29 H 0.96697 * 114.00091 * 59.99334 * 5 4 3 30 30 H 0.97003 * 120.00055 * 184.99980 * 9 8 6 31 31 H 1.07993 * 119.97365 * 0.02562 * 15 14 4 32 32 H 1.08001 * 119.94373 * 180.02562 * 16 15 14 33 33 H 1.08001 * 119.97282 * 180.02562 * 17 16 15 34 34 H 1.07998 * 120.02319 * 180.02562 * 18 17 16 35 35 H 1.08996 * 109.47320 * 183.84241 * 21 20 19 36 36 H 1.09009 * 109.46696 * 303.84080 * 21 20 19 37 37 H 1.09003 * 109.47162 * 63.83659 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 8 4.0469 0.8730 -1.2201 6 6 4.0719 0.6276 1.1648 7 1 4.6183 -0.2870 0.9881 8 6 3.8334 1.0498 2.4555 9 7 3.0833 2.1078 2.6733 10 14 4.5759 0.1190 3.8949 11 1 5.3730 -1.0259 3.3857 12 1 5.4556 1.0287 4.6718 13 1 3.4887 -0.3863 4.7713 14 6 4.0723 2.8579 0.1245 15 6 3.1773 3.9104 0.1385 16 6 3.6375 5.2090 0.2527 17 6 4.9941 5.4581 0.3525 18 6 5.8929 4.4093 0.3388 19 6 5.4340 3.1055 0.2183 20 8 6.3166 2.0723 0.1992 21 6 7.6927 2.3905 0.4165 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 1.6767 1.9563 0.8899 28 1 1.6767 1.9564 -0.8900 29 1 3.7619 1.3473 -2.0131 30 1 2.9745 2.4479 3.5752 31 1 2.1174 3.7184 0.0610 32 1 2.9364 6.0304 0.2638 33 1 5.3511 6.4735 0.4420 34 1 6.9522 4.6044 0.4172 35 1 8.2955 1.4889 0.3083 36 1 8.0139 3.1323 -0.3148 37 1 7.8182 2.7931 1.4216 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259840468.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:37 Heat of formation + Delta-G solvation = -83.188567 kcal Electronic energy + Delta-G solvation = -19615.000694 eV Core-core repulsion = 16742.964696 eV Total energy + Delta-G solvation = -2872.035998 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.97146 -38.72567 -37.50108 -34.95608 -34.07456 -32.03162 -30.68210 -29.10382 -27.86088 -26.91892 -24.26861 -22.88062 -21.94719 -21.19743 -18.76453 -18.10684 -17.49953 -16.58809 -16.49141 -16.25012 -15.96107 -15.66643 -15.02380 -14.78050 -14.62210 -14.26970 -13.79517 -13.37710 -13.13472 -12.89211 -12.80687 -12.75007 -12.43230 -12.34023 -12.23377 -12.02179 -11.81642 -11.67267 -11.52556 -11.14961 -10.70817 -10.56400 -10.07354 -9.42806 -8.66920 -7.98590 -6.03683 0.78407 0.89629 1.35898 1.40169 1.49825 2.45800 2.81422 3.20079 3.29718 4.12032 4.18036 4.28927 4.36174 4.40155 4.45845 4.48058 4.56668 4.64072 4.74133 4.79815 4.93115 4.94797 5.08211 5.17970 5.24014 5.32101 5.46095 5.54115 5.74182 5.75316 5.79959 5.92060 5.96346 6.04247 6.28916 6.41160 6.87612 6.99413 7.38938 7.66394 9.02123 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.016328 B = 0.011914 C = 0.009362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.401195 B = 2349.601337 C = 2990.249202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 C -0.122 4.122 4 C 0.288 3.712 5 O -0.574 6.574 6 C -0.476 4.476 7 H 0.032 0.968 8 C 0.037 3.963 9 N -0.888 5.888 10 Si 0.929 3.071 11 H -0.278 1.278 12 H -0.285 1.285 13 H -0.281 1.281 14 C -0.096 4.096 15 C -0.075 4.075 16 C -0.175 4.175 17 C -0.103 4.103 18 C -0.235 4.235 19 C 0.124 3.876 20 O -0.311 6.311 21 C 0.019 3.981 22 H 0.057 0.943 23 H 0.042 0.958 24 H 0.059 0.941 25 H 0.044 0.956 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.037 0.963 29 H 0.358 0.642 30 H 0.255 0.745 31 H 0.119 0.881 32 H 0.135 0.865 33 H 0.143 0.857 34 H 0.135 0.865 35 H 0.105 0.895 36 H 0.065 0.935 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.670 5.118 -4.871 7.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.138 4.138 3 C -0.160 4.160 4 C 0.248 3.752 5 O -0.379 6.379 6 C -0.514 4.514 7 H 0.050 0.950 8 C -0.163 4.163 9 N -0.527 5.527 10 Si 0.757 3.243 11 H -0.203 1.203 12 H -0.211 1.211 13 H -0.207 1.207 14 C -0.097 4.097 15 C -0.093 4.093 16 C -0.193 4.193 17 C -0.120 4.120 18 C -0.254 4.254 19 C 0.079 3.921 20 O -0.224 6.224 21 C -0.076 4.076 22 H 0.076 0.924 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.056 0.944 29 H 0.203 0.797 30 H 0.065 0.935 31 H 0.136 0.864 32 H 0.152 0.848 33 H 0.161 0.839 34 H 0.153 0.847 35 H 0.123 0.877 36 H 0.084 0.916 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.791 4.537 -4.308 6.507 hybrid contribution 0.465 0.062 0.897 1.012 sum 2.256 4.599 -3.410 6.154 Atomic orbital electron populations 1.21724 0.95514 1.01268 1.01193 1.21206 0.95013 0.97308 1.00308 1.22101 0.97294 0.96483 1.00135 1.17688 0.89734 0.85985 0.81773 1.86602 1.77986 1.57317 1.15985 1.20565 1.33854 1.07191 0.89800 0.94974 1.25114 0.95328 0.96333 0.99542 1.70000 1.37553 1.24211 1.20933 0.85949 0.78519 0.79057 0.80818 1.20277 1.21146 1.20700 1.20310 0.90403 0.97879 1.01127 1.20973 0.98973 0.92091 0.97307 1.21181 0.96141 0.96583 1.05401 1.21021 0.92936 0.98785 0.99307 1.21359 1.00876 0.91968 1.11186 1.19114 0.90180 0.86674 0.96162 1.86349 1.17251 1.32497 1.86302 1.23162 0.80734 1.03258 1.00461 0.92407 0.93905 0.92220 0.93682 0.94213 0.90762 0.94393 0.79729 0.93496 0.86353 0.84763 0.83929 0.84701 0.87685 0.91629 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 9.91 71.98 0.71 -4.03 16 2 C -0.10 -4.27 5.51 30.60 0.17 -4.10 16 3 C -0.12 -5.47 2.92 30.59 0.09 -5.38 16 4 C 0.29 14.09 0.43 -12.28 -0.01 14.09 16 5 O -0.57 -27.15 12.17 -148.76 -1.81 -28.96 16 6 C -0.48 -26.27 5.45 25.60 0.14 -26.13 16 7 H 0.03 1.92 7.82 -2.91 -0.02 1.90 16 8 C 0.04 2.00 5.13 84.66 0.43 2.43 16 9 N -0.89 -48.13 10.26 21.45 0.22 -47.91 16 10 Si 0.93 44.60 29.54 68.60 2.03 46.63 16 11 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 12 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 13 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 14 C -0.10 -4.48 3.64 -19.77 -0.07 -4.55 16 15 C -0.08 -3.18 8.62 22.25 0.19 -2.98 16 16 C -0.17 -6.33 10.04 22.28 0.22 -6.11 16 17 C -0.10 -3.51 10.04 22.26 0.22 -3.29 16 18 C -0.24 -8.88 9.07 22.37 0.20 -8.68 16 19 C 0.12 5.60 6.40 22.51 0.14 5.74 16 20 O -0.31 -14.14 8.69 -92.16 -0.80 -14.94 16 21 C 0.02 0.62 9.87 113.37 1.12 1.74 16 22 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 24 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 25 H 0.04 1.88 7.82 -2.38 -0.02 1.86 16 26 H 0.04 1.91 7.07 -2.39 -0.02 1.90 16 27 H 0.07 3.67 5.68 -2.39 -0.01 3.65 16 28 H 0.04 1.51 7.65 -2.39 -0.02 1.49 16 29 H 0.36 13.85 9.04 -74.06 -0.67 13.18 16 30 H 0.26 13.56 8.32 -92.71 -0.77 12.79 16 31 H 0.12 4.88 5.91 -2.91 -0.02 4.86 16 32 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 33 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 34 H 0.14 4.27 6.28 -2.91 -0.02 4.25 16 35 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 36 H 0.07 1.79 7.20 -2.38 -0.02 1.77 16 37 H 0.04 1.42 8.06 -2.39 -0.02 1.40 16 Total: -1.00 -63.42 298.57 3.60 -59.81 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 0.39 Total: 26.61 kcal Atomic # 6 Polarization: -44.82 SS G_CDS: 3.57 Total: -41.24 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: 0.22 Total: -47.91 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -2.61 Total: -43.90 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -63.42 3.60 -59.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259840468.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.374 kcal (2) G-P(sol) polarization free energy of solvation -63.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds