Wall clock time and date at job start Mon Mar 30 2020 06:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.50699 * 109.46972 * 180.02562 * 3 2 1 5 5 C 1.38169 * 120.02898 * 359.72342 * 4 3 2 6 6 C 1.38241 * 120.05656 * 179.76896 * 5 4 3 7 7 C 1.50698 * 119.94916 * 180.25846 * 6 5 4 8 8 C 1.53002 * 109.46879 * 270.25734 * 7 6 5 9 9 C 1.50699 * 109.47259 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99619 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00369 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00103 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 119.99889 * 359.97438 * 11 9 8 14 14 H 1.48493 * 109.47366 * 89.99676 * 13 11 9 15 15 H 1.48501 * 109.47020 * 210.00269 * 13 11 9 16 16 H 1.48506 * 109.46688 * 329.99564 * 13 11 9 17 17 C 1.38297 * 120.11181 * 0.50742 * 6 5 4 18 18 C 1.38121 * 120.04974 * 359.75109 * 17 6 5 19 19 C 1.38706 * 120.02744 * 180.02562 * 4 3 2 20 20 O 1.35900 * 120.05628 * 0.02562 * 19 4 3 21 21 C 1.42902 * 116.99846 * 180.02562 * 20 19 4 22 22 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 23 23 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 25 25 H 1.09000 * 109.47187 * 300.00233 * 3 2 1 26 26 H 1.09001 * 109.46558 * 60.00281 * 3 2 1 27 27 H 1.08005 * 119.97016 * 0.02562 * 5 4 3 28 28 H 1.09004 * 109.46955 * 30.24914 * 7 6 5 29 29 H 1.09001 * 109.47646 * 150.25294 * 7 6 5 30 30 H 1.09004 * 109.46657 * 299.99363 * 8 7 6 31 31 H 1.08994 * 109.47624 * 59.99545 * 8 7 6 32 32 H 0.97003 * 120.00065 * 179.97438 * 12 11 9 33 33 H 1.07999 * 119.97063 * 179.71969 * 17 6 5 34 34 H 1.08004 * 120.02560 * 179.97438 * 18 17 6 35 35 H 1.08996 * 109.46971 * 299.99215 * 21 20 19 36 36 H 1.08997 * 109.47739 * 59.99513 * 21 20 19 37 37 H 1.09007 * 109.46712 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.1073 -0.0605 0.0047 6 6 5.4854 -0.1703 -0.0007 7 6 6.1316 -1.5317 -0.0008 8 6 6.3503 -1.9925 1.4417 9 6 6.9971 -3.3536 1.4417 10 1 7.2286 -3.8414 0.5063 11 6 7.2933 -3.9762 2.6357 12 7 7.8573 -5.1642 2.6357 13 14 6.8935 -3.1321 4.2535 14 1 5.5228 -3.5087 4.6829 15 1 7.8706 -3.5567 5.2880 16 1 6.9695 -1.6597 4.0755 17 6 6.2720 0.9671 -0.0009 18 6 5.6822 2.2160 -0.0008 19 6 4.2992 2.3289 -0.0002 20 8 3.7166 3.5567 0.0013 21 6 4.5887 4.6887 0.0011 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6885 1.8465 -0.8900 26 1 1.6885 1.8463 0.8900 27 1 3.4951 -0.9503 0.0089 28 1 5.4833 -2.2416 -0.5146 29 1 7.0914 -1.4784 -0.5147 30 1 6.9986 -1.2826 1.9555 31 1 5.3906 -2.0459 1.9556 32 1 8.0660 -5.6021 3.4757 33 1 7.3484 0.8786 -0.0005 34 1 6.2969 3.1040 -0.0005 35 1 5.2184 4.6623 0.8904 36 1 5.2166 4.6635 -0.8895 37 1 3.9963 5.6037 0.0019 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259887781.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:29 Heat of formation + Delta-G solvation = -92.162773 kcal Electronic energy + Delta-G solvation = -17902.014919 eV Core-core repulsion = 15029.589770 eV Total energy + Delta-G solvation = -2872.425149 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.28252 -38.99740 -38.46014 -35.71738 -33.94778 -32.80190 -30.66595 -28.56626 -28.00005 -26.65976 -26.20630 -23.17049 -22.66626 -21.26226 -19.03270 -18.90969 -17.74884 -17.01108 -16.73410 -16.40705 -16.36913 -16.25638 -15.39770 -15.19382 -14.99865 -14.75623 -14.21512 -14.07280 -13.65104 -13.50230 -13.20032 -12.91361 -12.76322 -12.71394 -12.24842 -12.02732 -11.89970 -11.72310 -11.54128 -11.46423 -11.27990 -10.78302 -10.76423 -9.74109 -8.92224 -8.29840 -6.33429 0.36539 0.47330 1.34689 1.35250 1.48307 2.35486 2.37888 2.76036 2.78752 3.05459 3.79710 3.98882 4.02390 4.21472 4.29799 4.43428 4.45493 4.46792 4.52037 4.54828 4.61271 4.61842 4.74594 4.77684 4.82829 4.87024 5.04603 5.10064 5.32663 5.35421 5.44465 5.45366 5.65525 5.82504 5.88596 6.26571 6.28334 6.44549 6.73848 7.31187 8.86955 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019727 B = 0.005600 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.016005 B = 4999.196237 C = 5734.315453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.121 3.879 4 C -0.136 4.136 5 C -0.073 4.073 6 C -0.120 4.120 7 C -0.056 4.056 8 C 0.000 4.000 9 C -0.532 4.532 10 H 0.036 0.964 11 C 0.008 3.992 12 N -0.950 5.950 13 Si 0.946 3.054 14 H -0.268 1.268 15 H -0.279 1.279 16 H -0.251 1.251 17 C -0.087 4.087 18 C -0.199 4.199 19 C 0.118 3.882 20 O -0.328 6.328 21 C 0.017 3.983 22 H 0.055 0.945 23 H 0.094 0.906 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.125 0.875 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.018 0.982 31 H 0.010 0.990 32 H 0.267 0.733 33 H 0.135 0.865 34 H 0.158 0.842 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.792 21.856 -5.172 25.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C 0.045 3.955 4 C -0.137 4.137 5 C -0.091 4.091 6 C -0.120 4.120 7 C -0.094 4.094 8 C -0.037 4.037 9 C -0.570 4.570 10 H 0.054 0.946 11 C -0.189 4.189 12 N -0.591 5.591 13 Si 0.770 3.230 14 H -0.194 1.194 15 H -0.205 1.205 16 H -0.174 1.174 17 C -0.105 4.105 18 C -0.217 4.217 19 C 0.072 3.928 20 O -0.242 6.242 21 C -0.077 4.077 22 H 0.074 0.926 23 H 0.112 0.888 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.143 0.857 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.037 0.963 31 H 0.029 0.971 32 H 0.076 0.924 33 H 0.153 0.847 34 H 0.175 0.825 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.825 21.624 -5.069 25.162 hybrid contribution 0.215 -0.216 0.685 0.750 sum -11.610 21.408 -4.384 24.745 Atomic orbital electron populations 1.22935 0.79087 1.03841 1.01112 1.87863 1.21792 1.28141 1.95653 1.20977 0.88638 0.84475 1.01378 1.19174 0.95236 0.91173 1.08072 1.20733 0.93812 0.97067 0.97457 1.20105 0.93837 0.95872 1.02185 1.20333 0.99493 0.92008 0.97554 1.19448 0.95590 0.94338 0.94320 1.21501 1.39514 1.02671 0.93280 0.94606 1.25943 0.94401 0.95289 1.03265 1.70058 1.44545 1.16311 1.28139 0.85717 0.78477 0.80186 0.78665 1.19366 1.20480 1.17438 1.21086 1.00479 0.91355 0.97623 1.21374 0.93139 0.99104 1.08074 1.18653 0.91352 0.84661 0.98103 1.86004 1.37002 1.12431 1.88794 1.23357 0.95704 0.86349 1.02259 0.92607 0.88791 0.92969 0.90978 0.91452 0.85709 0.92584 0.91746 0.96334 0.97116 0.92433 0.84712 0.82488 0.91996 0.91656 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.73 16 2 O -0.41 -11.54 9.18 -148.98 -1.37 -12.91 16 3 C 0.12 3.11 5.80 71.24 0.41 3.52 16 4 C -0.14 -4.14 5.89 -19.77 -0.12 -4.26 16 5 C -0.07 -2.56 9.03 22.25 0.20 -2.36 16 6 C -0.12 -4.36 5.13 -19.85 -0.10 -4.46 16 7 C -0.06 -2.39 5.28 29.85 0.16 -2.23 16 8 C 0.00 0.02 4.02 29.85 0.12 0.14 16 9 C -0.53 -31.87 9.66 25.60 0.25 -31.62 16 10 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 11 C 0.01 0.47 5.47 84.65 0.46 0.94 16 12 N -0.95 -60.95 13.96 21.45 0.30 -60.65 16 13 Si 0.95 46.12 27.47 68.60 1.88 48.00 16 14 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 15 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 16 H -0.25 -11.55 6.54 99.48 0.65 -10.90 16 17 C -0.09 -2.71 9.69 22.26 0.22 -2.49 16 18 C -0.20 -5.13 9.04 22.37 0.20 -4.93 16 19 C 0.12 3.19 6.66 22.51 0.15 3.34 16 20 O -0.33 -7.28 9.92 -92.42 -0.92 -8.19 16 21 C 0.02 0.23 9.81 113.37 1.11 1.34 16 22 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.13 4.62 7.00 -2.91 -0.02 4.60 16 28 H 0.06 2.40 8.09 -2.38 -0.02 2.38 16 29 H 0.06 2.64 8.08 -2.39 -0.02 2.62 16 30 H 0.02 0.90 7.20 -2.38 -0.02 0.89 16 31 H 0.01 0.53 7.57 -2.39 -0.02 0.51 16 32 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 33 H 0.14 3.81 8.06 -2.91 -0.02 3.78 16 34 H 0.16 2.93 6.30 -2.91 -0.02 2.91 16 35 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 36 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 37 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -71.64 310.57 5.19 -66.45 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 0.98 Total: 8.63 kcal Atomic # 6 Polarization: -45.64 SS G_CDS: 4.31 Total: -41.33 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: 0.30 Total: -60.65 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -2.29 Total: -21.10 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.88 Total: 48.00 kcal Total: -71.64 5.19 -66.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259887781.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.712 kcal (2) G-P(sol) polarization free energy of solvation -71.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds