Wall clock time and date at job start Mon Mar 30 2020 06:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35993 * 117.00235 * 2 1 4 4 C 1.38573 * 120.07023 * 0.27520 * 3 2 1 5 5 C 1.38242 * 119.99588 * 180.27535 * 4 3 2 6 6 C 1.50702 * 119.92428 * 179.74220 * 5 4 3 7 7 C 1.53001 * 109.47342 * 299.98017 * 6 5 4 8 8 C 1.52998 * 109.46979 * 59.98206 * 6 5 4 9 9 C 1.38251 * 120.14894 * 359.72245 * 5 4 3 10 10 C 1.38245 * 120.14567 * 0.02562 * 9 5 4 11 11 C 1.50704 * 119.99965 * 179.97438 * 10 9 5 12 12 C 1.50703 * 109.46751 * 100.01917 * 11 10 9 13 13 H 1.07994 * 120.00092 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99583 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99927 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99859 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47211 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47137 * 120.00552 * 16 14 12 19 19 H 1.48503 * 109.46872 * 240.00415 * 16 14 12 20 20 C 1.38563 * 119.99834 * 359.97438 * 10 9 5 21 21 O 1.35995 * 120.07067 * 180.02562 * 20 10 9 22 22 H 1.09002 * 109.47231 * 60.00065 * 1 2 3 23 23 H 1.09004 * 109.47481 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47248 * 300.00059 * 1 2 3 25 25 H 1.07999 * 120.00008 * 359.97438 * 4 3 2 26 26 H 1.09005 * 109.46890 * 179.97438 * 6 5 4 27 27 H 1.08996 * 109.47244 * 59.99865 * 7 6 5 28 28 H 1.08995 * 109.47174 * 180.02562 * 7 6 5 29 29 H 1.09003 * 109.46895 * 300.00176 * 7 6 5 30 30 H 1.08995 * 109.46958 * 179.97438 * 8 6 5 31 31 H 1.09005 * 109.46950 * 299.99522 * 8 6 5 32 32 H 1.09001 * 109.47216 * 59.99846 * 8 6 5 33 33 H 1.07996 * 119.92962 * 180.02562 * 9 5 4 34 34 H 1.09000 * 109.47183 * 220.01486 * 11 10 9 35 35 H 1.09002 * 109.46803 * 340.02021 * 11 10 9 36 36 H 0.97003 * 120.00058 * 179.97438 * 15 14 12 37 37 H 0.96700 * 114.00111 * 90.00426 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0058 5 6 1.9224 3.6057 0.0000 6 6 1.1016 4.8696 0.0004 7 6 0.2139 4.9017 -1.2454 8 6 0.2240 4.9074 1.2531 9 6 3.3029 3.6798 -0.0057 10 6 4.0603 2.5233 -0.0062 11 6 5.5649 2.6079 -0.0131 12 6 6.0864 2.3927 1.3844 13 1 5.3973 2.2131 2.1962 14 6 7.4434 2.4252 1.6264 15 7 8.2826 2.6444 0.6377 16 14 8.0899 2.1591 3.3586 17 1 6.9499 1.9349 4.2834 18 1 8.9825 0.9725 3.3771 19 1 8.8513 3.3581 3.7924 20 6 3.4359 1.2863 -0.0005 21 8 4.1795 0.1477 -0.0004 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 0.2146 2.3197 0.0098 26 1 1.7656 5.7340 -0.0041 27 1 -0.4500 4.0373 -1.2408 28 1 -0.3794 5.8160 -1.2453 29 1 0.8392 4.8748 -2.1378 30 1 -0.3693 5.8217 1.2536 31 1 -0.4400 4.0429 1.2577 32 1 0.8564 4.8845 2.1406 33 1 3.7908 4.6433 -0.0098 34 1 5.9690 1.8409 -0.6737 35 1 5.8718 3.5918 -0.3680 36 1 9.2373 2.6676 0.8080 37 1 4.3980 -0.1794 0.8829 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259979783.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:59 Heat of formation + Delta-G solvation = -80.416535 kcal Electronic energy + Delta-G solvation = -18482.235651 eV Core-core repulsion = 15610.319857 eV Total energy + Delta-G solvation = -2871.915794 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.02468 -37.66203 -36.75696 -34.30151 -32.96562 -30.65537 -28.77848 -27.39364 -27.08097 -26.47097 -23.36181 -22.34044 -21.20931 -19.13526 -17.74588 -16.92648 -16.34170 -15.90288 -15.51819 -14.81255 -14.55627 -14.39528 -13.93172 -13.54952 -13.33208 -13.03873 -12.47739 -12.23923 -12.06407 -11.77880 -11.65391 -11.47559 -11.28686 -11.17285 -10.87521 -10.73147 -10.61816 -10.39256 -10.31845 -9.99523 -9.43728 -9.34323 -8.42017 -7.77140 -7.50975 -6.03702 -4.07762 1.84640 2.02314 3.29074 3.36874 3.40558 3.58913 4.19122 4.45430 4.83120 4.96617 5.04289 5.17264 5.24645 5.30896 5.31434 5.45368 5.53976 5.63881 5.64637 5.75355 5.84911 5.85201 6.02012 6.10418 6.26233 6.31492 6.34483 6.59229 6.72219 6.96238 7.11768 7.36559 7.57866 7.70203 7.84810 7.91891 8.30597 8.56000 8.96728 9.55576 11.06443 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020980 B = 0.006639 C = 0.005690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.262931 B = 4216.787286 C = 4920.071139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.094 3.906 4 C -0.215 4.215 5 C -0.055 4.055 6 C -0.055 4.055 7 C -0.141 4.141 8 C -0.141 4.141 9 C -0.143 4.143 10 C -0.021 4.021 11 C 0.052 3.948 12 C -0.510 4.510 13 H 0.055 0.945 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.894 3.106 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.284 1.284 20 C 0.071 3.929 21 O -0.480 6.480 22 H 0.050 0.950 23 H 0.093 0.907 24 H 0.049 0.951 25 H 0.120 0.880 26 H 0.078 0.922 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.122 0.878 34 H 0.040 0.960 35 H 0.029 0.971 36 H 0.262 0.738 37 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.567 1.155 -0.616 16.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.226 6.226 3 C 0.049 3.951 4 C -0.233 4.233 5 C -0.055 4.055 6 C -0.073 4.073 7 C -0.198 4.198 8 C -0.199 4.199 9 C -0.162 4.162 10 C -0.022 4.022 11 C 0.015 3.985 12 C -0.549 4.549 13 H 0.073 0.927 14 C -0.141 4.141 15 N -0.530 5.530 16 Si 0.722 3.278 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.210 1.210 20 C 0.025 3.975 21 O -0.289 6.289 22 H 0.068 0.932 23 H 0.111 0.889 24 H 0.068 0.932 25 H 0.137 0.863 26 H 0.096 0.904 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.140 0.860 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -16.337 1.026 -1.272 16.418 hybrid contribution 0.233 -0.080 1.485 1.505 sum -16.104 0.947 0.213 16.133 Atomic orbital electron populations 1.22946 0.79722 1.03121 1.00829 1.86132 1.20199 1.26996 1.89223 1.19468 0.91781 0.84228 0.99610 1.20615 0.98845 0.91425 1.12455 1.19515 0.93589 0.93534 0.98835 1.20085 0.96372 0.95509 0.95369 1.21833 0.99255 1.01217 0.97522 1.21831 0.99318 1.01173 0.97537 1.20849 0.92120 0.98379 1.04815 1.20874 0.99612 0.90394 0.91300 1.18285 0.83543 0.98557 0.98087 1.20994 0.91523 1.49419 0.92927 0.92674 1.24988 0.96928 0.95197 0.97035 1.69967 1.02626 1.49351 1.31057 0.86504 0.78950 0.77837 0.84546 1.19755 1.20901 1.20965 1.17617 0.85300 0.87059 1.07520 1.84768 1.71894 1.39199 1.33043 0.93185 0.88860 0.93192 0.86255 0.90355 0.92855 0.92772 0.92462 0.92791 0.92872 0.92363 0.86031 0.94217 0.95281 0.92872 0.76187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.31 -5.33 10.28 -34.22 -0.35 -5.68 16 3 C 0.09 1.76 6.70 -39.12 -0.26 1.50 16 4 C -0.21 -3.48 7.70 -39.46 -0.30 -3.79 16 5 C -0.05 -0.90 4.78 -104.61 -0.50 -1.40 16 6 C -0.05 -0.71 3.09 -91.77 -0.28 -0.99 16 7 C -0.14 -1.56 9.01 37.16 0.33 -1.23 16 8 C -0.14 -1.60 9.01 37.16 0.33 -1.27 16 9 C -0.14 -2.80 9.29 -39.57 -0.37 -3.17 16 10 C -0.02 -0.48 5.09 -104.50 -0.53 -1.01 16 11 C 0.05 1.36 4.77 -29.03 -0.14 1.23 16 12 C -0.51 -14.15 9.09 -34.44 -0.31 -14.46 16 13 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 16 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C 0.07 1.52 6.68 -39.12 -0.26 1.26 16 21 O -0.48 -10.47 12.52 -34.23 -0.43 -10.90 16 22 H 0.05 0.53 7.68 -51.93 -0.40 0.13 16 23 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.05 0.52 7.65 -51.93 -0.40 0.12 16 25 H 0.12 1.60 5.33 -52.49 -0.28 1.32 16 26 H 0.08 1.00 7.87 -51.93 -0.41 0.59 16 27 H 0.05 0.57 7.38 -51.93 -0.38 0.18 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.57 7.38 -51.93 -0.38 0.19 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.12 2.28 7.92 -52.49 -0.42 1.87 16 34 H 0.04 1.13 7.85 -51.93 -0.41 0.72 16 35 H 0.03 0.79 8.00 -51.93 -0.42 0.37 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.38 7.21 9.06 45.56 0.41 7.62 16 LS Contribution 310.29 15.07 4.68 4.68 Total: -1.00 -31.43 310.29 -6.52 -37.95 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -4.73 Total: 3.68 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -1.40 Total: -20.40 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.74 Total: -25.67 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.78 Total: -16.58 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.43 -6.52 -37.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259979783.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.465 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds