Wall clock time and date at job start Mon Mar 30 2020 06:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35993 * 117.00235 * 2 1 4 4 C 1.38573 * 120.07023 * 0.27520 * 3 2 1 5 5 C 1.38242 * 119.99588 * 180.27535 * 4 3 2 6 6 C 1.50702 * 119.92428 * 179.74220 * 5 4 3 7 7 C 1.53001 * 109.47342 * 299.98017 * 6 5 4 8 8 C 1.52998 * 109.46979 * 59.98206 * 6 5 4 9 9 C 1.38251 * 120.14894 * 359.72245 * 5 4 3 10 10 C 1.38245 * 120.14567 * 0.02562 * 9 5 4 11 11 C 1.50704 * 119.99965 * 179.97438 * 10 9 5 12 12 C 1.50703 * 109.46751 * 100.01917 * 11 10 9 13 13 H 1.07994 * 120.00092 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99583 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99927 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99859 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47211 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47137 * 120.00552 * 16 14 12 19 19 H 1.48503 * 109.46872 * 240.00415 * 16 14 12 20 20 C 1.38563 * 119.99834 * 359.97438 * 10 9 5 21 21 O 1.35995 * 120.07067 * 180.02562 * 20 10 9 22 22 H 1.09002 * 109.47231 * 60.00065 * 1 2 3 23 23 H 1.09004 * 109.47481 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47248 * 300.00059 * 1 2 3 25 25 H 1.07999 * 120.00008 * 359.97438 * 4 3 2 26 26 H 1.09005 * 109.46890 * 179.97438 * 6 5 4 27 27 H 1.08996 * 109.47244 * 59.99865 * 7 6 5 28 28 H 1.08995 * 109.47174 * 180.02562 * 7 6 5 29 29 H 1.09003 * 109.46895 * 300.00176 * 7 6 5 30 30 H 1.08995 * 109.46958 * 179.97438 * 8 6 5 31 31 H 1.09005 * 109.46950 * 299.99522 * 8 6 5 32 32 H 1.09001 * 109.47216 * 59.99846 * 8 6 5 33 33 H 1.07996 * 119.92962 * 180.02562 * 9 5 4 34 34 H 1.09000 * 109.47183 * 220.01486 * 11 10 9 35 35 H 1.09002 * 109.46803 * 340.02021 * 11 10 9 36 36 H 0.97003 * 120.00058 * 179.97438 * 15 14 12 37 37 H 0.96700 * 114.00111 * 90.00426 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0058 5 6 1.9224 3.6057 0.0000 6 6 1.1016 4.8696 0.0004 7 6 0.2139 4.9017 -1.2454 8 6 0.2240 4.9074 1.2531 9 6 3.3029 3.6798 -0.0057 10 6 4.0603 2.5233 -0.0062 11 6 5.5649 2.6079 -0.0131 12 6 6.0864 2.3927 1.3844 13 1 5.3973 2.2131 2.1962 14 6 7.4434 2.4252 1.6264 15 7 8.2826 2.6444 0.6377 16 14 8.0899 2.1591 3.3586 17 1 6.9499 1.9349 4.2834 18 1 8.9825 0.9725 3.3771 19 1 8.8513 3.3581 3.7924 20 6 3.4359 1.2863 -0.0005 21 8 4.1795 0.1477 -0.0004 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 0.2146 2.3197 0.0098 26 1 1.7656 5.7340 -0.0041 27 1 -0.4500 4.0373 -1.2408 28 1 -0.3794 5.8160 -1.2453 29 1 0.8392 4.8748 -2.1378 30 1 -0.3693 5.8217 1.2536 31 1 -0.4400 4.0429 1.2577 32 1 0.8564 4.8845 2.1406 33 1 3.7908 4.6433 -0.0098 34 1 5.9690 1.8409 -0.6737 35 1 5.8718 3.5918 -0.3680 36 1 9.2373 2.6676 0.8080 37 1 4.3980 -0.1794 0.8829 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259979783.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:58 Heat of formation + Delta-G solvation = -100.430752 kcal Electronic energy + Delta-G solvation = -18483.103533 eV Core-core repulsion = 15610.319857 eV Total energy + Delta-G solvation = -2872.783675 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.44156 -38.98216 -38.20191 -35.87145 -34.82248 -32.37263 -30.12168 -28.94384 -27.92453 -27.87103 -25.25710 -23.71938 -22.61945 -20.50865 -19.32005 -18.47320 -18.22544 -17.37165 -16.79533 -16.53966 -16.11760 -15.57973 -15.09869 -14.86692 -14.49237 -14.47971 -14.19196 -13.68884 -13.30639 -13.23247 -13.08713 -12.83790 -12.65751 -12.60493 -12.47440 -12.12733 -12.03511 -11.81015 -11.63217 -11.58328 -11.28871 -11.08130 -10.61405 -9.36326 -8.95849 -8.20255 -6.33714 0.36491 0.52071 1.39676 1.40112 1.53301 2.37928 2.39228 2.73969 3.11304 3.48885 3.74733 3.90841 4.22559 4.27626 4.37038 4.38105 4.42158 4.53571 4.57587 4.69072 4.74082 4.86814 4.96871 5.03130 5.07029 5.09899 5.24502 5.33961 5.34604 5.36751 5.45640 5.67690 5.73048 5.85685 5.91097 6.15957 6.41747 6.78161 6.99728 7.34614 8.90283 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020980 B = 0.006639 C = 0.005690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.262931 B = 4216.787286 C = 4920.071139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.332 6.332 3 C 0.099 3.901 4 C -0.200 4.200 5 C -0.040 4.040 6 C -0.057 4.057 7 C -0.138 4.138 8 C -0.139 4.139 9 C -0.159 4.159 10 C -0.051 4.051 11 C 0.065 3.935 12 C -0.521 4.521 13 H 0.055 0.945 14 C 0.005 3.995 15 N -0.931 5.931 16 Si 0.968 3.032 17 H -0.263 1.263 18 H -0.277 1.277 19 H -0.277 1.277 20 C 0.039 3.961 21 O -0.498 6.498 22 H 0.065 0.935 23 H 0.119 0.881 24 H 0.066 0.934 25 H 0.159 0.841 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.119 0.881 34 H 0.001 0.999 35 H 0.004 0.996 36 H 0.265 0.735 37 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.781 1.503 0.582 19.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.246 6.246 3 C 0.054 3.946 4 C -0.218 4.218 5 C -0.040 4.040 6 C -0.075 4.075 7 C -0.195 4.195 8 C -0.196 4.196 9 C -0.178 4.178 10 C -0.052 4.052 11 C 0.028 3.972 12 C -0.559 4.559 13 H 0.074 0.926 14 C -0.193 4.193 15 N -0.571 5.571 16 Si 0.792 3.208 17 H -0.187 1.187 18 H -0.203 1.203 19 H -0.202 1.202 20 C -0.006 4.006 21 O -0.307 6.307 22 H 0.084 0.916 23 H 0.137 0.863 24 H 0.085 0.915 25 H 0.177 0.823 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.137 0.863 34 H 0.019 0.981 35 H 0.022 0.978 36 H 0.074 0.926 37 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -19.577 1.372 -0.075 19.625 hybrid contribution 1.093 -0.203 1.055 1.532 sum -18.484 1.169 0.979 18.547 Atomic orbital electron populations 1.23373 0.76553 1.05509 1.02326 1.86111 1.23419 1.26212 1.88834 1.19416 0.90847 0.85801 0.98567 1.21001 1.00581 0.90139 1.10079 1.19912 0.92470 0.95643 0.95990 1.20203 0.96574 0.93232 0.97486 1.21825 0.98986 1.03013 0.95706 1.21824 0.99058 1.03006 0.95690 1.20904 0.93761 0.97201 1.05889 1.20587 0.97482 0.92372 0.94734 1.17936 0.86836 0.95578 0.96821 1.21263 0.91971 1.49170 0.93530 0.92633 1.25938 0.97142 0.94667 1.01566 1.70103 1.03061 1.50363 1.33572 0.85351 0.78400 0.77943 0.79061 1.18700 1.20256 1.20214 1.17798 0.86922 0.86295 1.09606 1.84730 1.72537 1.39638 1.33841 0.91642 0.86330 0.91492 0.82326 0.90516 0.91805 0.90360 0.93544 0.90362 0.91773 0.93712 0.86343 0.98069 0.97786 0.92588 0.75590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.33 -10.73 10.28 -79.61 -0.82 -11.55 16 3 C 0.10 3.62 6.70 22.57 0.15 3.77 16 4 C -0.20 -5.93 7.70 22.35 0.17 -5.76 16 5 C -0.04 -1.25 4.78 -19.86 -0.09 -1.35 16 6 C -0.06 -1.29 3.09 -11.54 -0.04 -1.33 16 7 C -0.14 -2.53 9.01 71.98 0.65 -1.88 16 8 C -0.14 -2.60 9.01 71.98 0.65 -1.95 16 9 C -0.16 -6.38 9.29 22.27 0.21 -6.17 16 10 C -0.05 -2.42 5.09 -19.78 -0.10 -2.52 16 11 C 0.07 3.68 4.77 29.10 0.14 3.81 16 12 C -0.52 -30.19 9.09 25.60 0.23 -29.96 16 13 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 14 C 0.00 0.29 5.46 84.66 0.46 0.75 16 15 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 16 Si 0.97 44.62 29.54 68.60 2.03 46.64 16 17 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 20 C 0.04 1.73 6.68 22.57 0.15 1.88 16 21 O -0.50 -22.86 12.52 -79.63 -1.00 -23.86 16 22 H 0.06 1.08 7.68 -2.39 -0.02 1.07 16 23 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.07 1.09 7.65 -2.39 -0.02 1.07 16 25 H 0.16 3.44 5.33 -2.91 -0.02 3.43 16 26 H 0.08 1.80 7.87 -2.38 -0.02 1.78 16 27 H 0.06 1.04 7.38 -2.39 -0.02 1.02 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.07 7.38 -2.38 -0.02 1.05 16 32 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.12 4.66 7.92 -2.91 -0.02 4.64 16 34 H 0.00 0.07 7.85 -2.39 -0.02 0.05 16 35 H 0.00 0.23 8.00 -2.39 -0.02 0.21 16 36 H 0.27 15.24 8.31 -92.71 -0.77 14.46 16 37 H 0.39 15.59 9.06 -74.06 -0.67 14.92 16 Total: -1.00 -71.39 310.29 4.58 -66.81 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.39 Total: 18.27 kcal Atomic # 6 Polarization: -42.97 SS G_CDS: 3.69 Total: -39.28 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 0.28 Total: -57.04 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -1.82 Total: -35.41 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -71.39 4.58 -66.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259979783.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.624 kcal (2) G-P(sol) polarization free energy of solvation -71.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds