Wall clock time and date at job start Mon Mar 30 2020 05:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35995 * 117.00184 * 2 1 4 4 C 1.38570 * 120.07054 * 0.23385 * 3 2 1 5 5 C 1.38238 * 119.99735 * 180.25255 * 4 3 2 6 6 C 1.50695 * 119.92755 * 179.76907 * 5 4 3 7 7 C 1.53005 * 109.47045 * 247.18719 * 6 5 4 8 8 C 1.52995 * 109.47389 * 127.18666 * 6 5 4 9 9 C 1.50703 * 109.47266 * 7.18174 * 6 5 4 10 10 H 1.07999 * 120.00127 * 244.94553 * 9 6 5 11 11 C 1.37879 * 119.99408 * 64.66556 * 9 6 5 12 12 N 1.31521 * 119.99593 * 180.94199 * 11 9 6 13 13 Si 1.86797 * 120.00213 * 0.94298 * 11 9 6 14 14 H 1.48503 * 109.46859 * 93.04759 * 13 11 9 15 15 H 1.48503 * 109.47003 * 213.04052 * 13 11 9 16 16 H 1.48491 * 109.47329 * 333.04806 * 13 11 9 17 17 C 1.38249 * 120.14600 * 359.49152 * 5 4 3 18 18 C 1.38244 * 120.15009 * 0.27758 * 17 5 4 19 19 C 1.50698 * 120.00480 * 180.02562 * 18 17 5 20 20 C 1.38571 * 119.99677 * 359.97347 * 18 17 5 21 21 O 1.35993 * 120.07587 * 180.02562 * 20 18 17 22 22 H 1.08999 * 109.47092 * 60.00026 * 1 2 3 23 23 H 1.09001 * 109.47208 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46862 * 299.99904 * 1 2 3 25 25 H 1.08003 * 119.99848 * 359.97438 * 4 3 2 26 26 H 1.08998 * 109.47144 * 179.97438 * 7 6 5 27 27 H 1.09000 * 109.46892 * 299.99407 * 7 6 5 28 28 H 1.09003 * 109.47377 * 59.99563 * 7 6 5 29 29 H 1.09000 * 109.46676 * 295.76546 * 8 6 5 30 30 H 1.08995 * 109.47140 * 55.77022 * 8 6 5 31 31 H 1.09000 * 109.47161 * 175.76729 * 8 6 5 32 32 H 0.96997 * 119.99876 * 179.97438 * 12 11 9 33 33 H 1.08005 * 119.92681 * 180.25565 * 17 5 4 34 34 H 1.09004 * 109.46856 * 89.99746 * 19 18 17 35 35 H 1.09000 * 109.47043 * 209.99516 * 19 18 17 36 36 H 1.09004 * 109.46811 * 329.99828 * 19 18 17 37 37 H 0.96700 * 113.99631 * 90.00363 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2932 2.3748 0.0049 5 6 1.9224 3.6057 -0.0004 6 6 1.1017 4.8696 -0.0003 7 6 1.2881 5.5987 -1.3325 8 6 1.5594 5.7749 1.1450 9 6 -0.3535 4.5236 0.1836 10 1 -1.0605 4.7244 -0.6077 11 6 -0.7812 3.9454 1.3599 12 7 -2.0479 3.6264 1.5133 13 14 0.4384 3.6150 2.7357 14 1 0.4517 4.7672 3.6726 15 1 0.0380 2.3865 3.4678 16 1 1.7948 3.4288 2.1608 17 6 3.3029 3.6798 0.0001 18 6 4.0603 2.5233 0.0000 19 6 5.5649 2.6079 0.0011 20 6 3.4360 1.2862 0.0000 21 8 4.1795 0.1476 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.2146 2.3196 0.0083 26 1 0.6941 6.5127 -1.3326 27 1 2.3406 5.8490 -1.4655 28 1 0.9620 4.9538 -2.1485 29 1 1.3571 5.2857 2.0978 30 1 2.6289 5.9640 1.0534 31 1 1.0182 6.7199 1.0996 32 1 -2.3487 3.2193 2.3407 33 1 3.7908 4.6434 0.0001 34 1 5.9270 2.6278 1.0290 35 1 5.9780 1.7399 -0.5129 36 1 5.8781 3.5172 -0.5122 37 1 4.3942 -0.1816 0.8841 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259984357.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:18 Heat of formation + Delta-G solvation = -51.268240 kcal Electronic energy + Delta-G solvation = -19534.181876 eV Core-core repulsion = 16663.530047 eV Total energy + Delta-G solvation = -2870.651829 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.05865 -37.63954 -37.13694 -34.54085 -31.92537 -31.36971 -28.51277 -27.08565 -26.58103 -26.03711 -24.85467 -22.08917 -20.76632 -19.01020 -17.90924 -17.03808 -16.11162 -15.77983 -15.42875 -14.94871 -14.66387 -13.81096 -13.67117 -13.28143 -13.04950 -12.90970 -12.45936 -12.42857 -12.09711 -11.79374 -11.70699 -11.45359 -11.27367 -11.15818 -10.91416 -10.33063 -10.22384 -10.12127 -9.95352 -9.81248 -9.13741 -9.05279 -8.63269 -7.69546 -7.37504 -6.20760 -4.21061 1.88726 2.03861 3.22718 3.35518 3.41955 3.77856 4.26120 4.32751 4.76508 5.06188 5.33426 5.49394 5.60815 5.73701 5.77724 5.82855 5.87350 5.95861 6.02452 6.13295 6.17750 6.21869 6.32911 6.40934 6.46020 6.64419 6.69255 6.71661 6.84603 6.97488 7.17826 7.25086 7.37071 7.47839 7.74655 7.78703 8.24278 8.41661 8.83573 9.41390 10.89961 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019285 B = 0.011816 C = 0.009124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.551873 B = 2369.074048 C = 3067.932753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.095 3.905 4 C -0.183 4.183 5 C 0.000 4.000 6 C 0.060 3.940 7 C -0.116 4.116 8 C -0.137 4.137 9 C -0.508 4.508 10 H 0.079 0.921 11 C 0.077 3.923 12 N -0.895 5.895 13 Si 0.864 3.136 14 H -0.286 1.286 15 H -0.302 1.302 16 H -0.238 1.238 17 C -0.158 4.158 18 C -0.085 4.085 19 C -0.104 4.104 20 C 0.041 3.959 21 O -0.488 6.488 22 H 0.059 0.941 23 H 0.092 0.908 24 H 0.057 0.943 25 H 0.161 0.839 26 H 0.051 0.949 27 H 0.033 0.967 28 H 0.047 0.953 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.055 0.945 32 H 0.264 0.736 33 H 0.118 0.882 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.920 -2.789 -1.144 10.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.049 3.951 4 C -0.202 4.202 5 C 0.000 4.000 6 C 0.059 3.941 7 C -0.173 4.173 8 C -0.194 4.194 9 C -0.546 4.546 10 H 0.097 0.903 11 C -0.125 4.125 12 N -0.532 5.532 13 Si 0.695 3.305 14 H -0.214 1.214 15 H -0.231 1.231 16 H -0.162 1.162 17 C -0.176 4.176 18 C -0.086 4.086 19 C -0.161 4.161 20 C -0.004 4.004 21 O -0.295 6.295 22 H 0.078 0.922 23 H 0.111 0.889 24 H 0.076 0.924 25 H 0.178 0.822 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.136 0.864 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 9.819 -3.008 -1.662 10.403 hybrid contribution 0.166 -0.152 1.567 1.583 sum 9.985 -3.159 -0.096 10.474 Atomic orbital electron populations 1.23033 0.78461 1.02903 1.02456 1.86015 1.21219 1.26816 1.89065 1.19546 0.91431 0.85164 0.98945 1.21776 1.02545 0.90566 1.05275 1.20423 0.92588 0.96447 0.90586 1.17690 0.95021 0.88616 0.92756 1.21645 0.98821 0.99656 0.97191 1.22194 0.98502 1.00045 0.98652 1.20885 0.90761 1.40594 1.02345 0.90331 1.25037 0.94823 0.94713 0.97942 1.69911 1.14563 1.42110 1.26581 0.87403 0.84132 0.76450 0.82482 1.21445 1.23058 1.16219 1.20762 0.93742 0.96844 1.06301 1.19811 0.95915 0.91794 1.01052 1.20599 0.91285 1.02496 1.01676 1.17374 0.85983 0.85687 1.11386 1.84846 1.72121 1.40254 1.32319 0.92245 0.88939 0.92419 0.82189 0.92997 0.94750 0.93432 0.94387 0.94580 0.92559 0.92578 0.86383 0.91903 0.91302 0.91762 0.77494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.81 101.05 0.99 1.46 16 2 O -0.32 -6.32 10.28 -34.23 -0.35 -6.67 16 3 C 0.09 1.99 6.70 -39.12 -0.26 1.73 16 4 C -0.18 -4.11 5.65 -39.46 -0.22 -4.33 16 5 C 0.00 0.00 2.51 -104.62 -0.26 -0.26 16 6 C 0.06 1.32 0.59 -156.81 -0.09 1.23 16 7 C -0.12 -2.24 8.29 37.16 0.31 -1.93 16 8 C -0.14 -2.86 7.72 37.16 0.29 -2.57 16 9 C -0.51 -13.24 7.38 -34.44 -0.25 -13.49 16 10 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 11 C 0.08 2.08 4.25 -17.82 -0.08 2.01 16 12 N -0.89 -25.69 13.96 55.43 0.77 -24.92 16 13 Si 0.86 21.30 22.04 -169.99 -3.75 17.56 16 14 H -0.29 -7.08 7.00 56.52 0.40 -6.69 16 15 H -0.30 -7.64 7.11 56.52 0.40 -7.23 16 16 H -0.24 -5.62 4.49 56.52 0.25 -5.36 16 17 C -0.16 -3.02 8.21 -39.58 -0.32 -3.35 16 18 C -0.09 -1.53 5.89 -104.50 -0.62 -2.14 16 19 C -0.10 -1.43 9.79 36.00 0.35 -1.08 16 20 C 0.04 0.78 6.69 -39.12 -0.26 0.52 16 21 O -0.49 -8.25 12.33 -34.22 -0.42 -8.68 16 22 H 0.06 1.04 7.67 -51.93 -0.40 0.64 16 23 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 24 H 0.06 1.10 7.65 -51.93 -0.40 0.70 16 25 H 0.16 3.87 3.86 -52.48 -0.20 3.67 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.03 0.58 7.87 -51.93 -0.41 0.17 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.04 0.85 2.61 -51.93 -0.14 0.72 16 30 H 0.04 0.64 6.84 -51.93 -0.36 0.29 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.12 2.01 7.05 -52.48 -0.37 1.64 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.91 7.53 -51.93 -0.39 0.52 16 36 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 37 H 0.37 4.69 9.06 45.56 0.41 5.10 16 LS Contribution 285.95 15.07 4.31 4.31 Total: -1.00 -30.07 285.95 -4.36 -34.43 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.49 Total: 6.18 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -0.43 Total: -22.21 kcal Atomic # 7 Polarization: -25.69 SS G_CDS: 0.77 Total: -24.92 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.77 Total: -15.35 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -3.75 Total: 17.56 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.07 -4.36 -34.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259984357.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.840 kcal (2) G-P(sol) polarization free energy of solvation -30.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds