Wall clock time and date at job start Mon Mar 30 2020 05:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35995 * 117.00184 * 2 1 4 4 C 1.38570 * 120.07054 * 0.23385 * 3 2 1 5 5 C 1.38238 * 119.99735 * 180.25255 * 4 3 2 6 6 C 1.50695 * 119.92755 * 179.76907 * 5 4 3 7 7 C 1.53005 * 109.47045 * 247.18719 * 6 5 4 8 8 C 1.52995 * 109.47389 * 127.18666 * 6 5 4 9 9 C 1.50703 * 109.47266 * 7.18174 * 6 5 4 10 10 H 1.07999 * 120.00127 * 244.94553 * 9 6 5 11 11 C 1.37879 * 119.99408 * 64.66556 * 9 6 5 12 12 N 1.31521 * 119.99593 * 180.94199 * 11 9 6 13 13 Si 1.86797 * 120.00213 * 0.94298 * 11 9 6 14 14 H 1.48503 * 109.46859 * 93.04759 * 13 11 9 15 15 H 1.48503 * 109.47003 * 213.04052 * 13 11 9 16 16 H 1.48491 * 109.47329 * 333.04806 * 13 11 9 17 17 C 1.38249 * 120.14600 * 359.49152 * 5 4 3 18 18 C 1.38244 * 120.15009 * 0.27758 * 17 5 4 19 19 C 1.50698 * 120.00480 * 180.02562 * 18 17 5 20 20 C 1.38571 * 119.99677 * 359.97347 * 18 17 5 21 21 O 1.35993 * 120.07587 * 180.02562 * 20 18 17 22 22 H 1.08999 * 109.47092 * 60.00026 * 1 2 3 23 23 H 1.09001 * 109.47208 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46862 * 299.99904 * 1 2 3 25 25 H 1.08003 * 119.99848 * 359.97438 * 4 3 2 26 26 H 1.08998 * 109.47144 * 179.97438 * 7 6 5 27 27 H 1.09000 * 109.46892 * 299.99407 * 7 6 5 28 28 H 1.09003 * 109.47377 * 59.99563 * 7 6 5 29 29 H 1.09000 * 109.46676 * 295.76546 * 8 6 5 30 30 H 1.08995 * 109.47140 * 55.77022 * 8 6 5 31 31 H 1.09000 * 109.47161 * 175.76729 * 8 6 5 32 32 H 0.96997 * 119.99876 * 179.97438 * 12 11 9 33 33 H 1.08005 * 119.92681 * 180.25565 * 17 5 4 34 34 H 1.09004 * 109.46856 * 89.99746 * 19 18 17 35 35 H 1.09000 * 109.47043 * 209.99516 * 19 18 17 36 36 H 1.09004 * 109.46811 * 329.99828 * 19 18 17 37 37 H 0.96700 * 113.99631 * 90.00363 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2932 2.3748 0.0049 5 6 1.9224 3.6057 -0.0004 6 6 1.1017 4.8696 -0.0003 7 6 1.2881 5.5987 -1.3325 8 6 1.5594 5.7749 1.1450 9 6 -0.3535 4.5236 0.1836 10 1 -1.0605 4.7244 -0.6077 11 6 -0.7812 3.9454 1.3599 12 7 -2.0479 3.6264 1.5133 13 14 0.4384 3.6150 2.7357 14 1 0.4517 4.7672 3.6726 15 1 0.0380 2.3865 3.4678 16 1 1.7948 3.4288 2.1608 17 6 3.3029 3.6798 0.0001 18 6 4.0603 2.5233 0.0000 19 6 5.5649 2.6079 0.0011 20 6 3.4360 1.2862 0.0000 21 8 4.1795 0.1476 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.2146 2.3196 0.0083 26 1 0.6941 6.5127 -1.3326 27 1 2.3406 5.8490 -1.4655 28 1 0.9620 4.9538 -2.1485 29 1 1.3571 5.2857 2.0978 30 1 2.6289 5.9640 1.0534 31 1 1.0182 6.7199 1.0996 32 1 -2.3487 3.2193 2.3407 33 1 3.7908 4.6434 0.0001 34 1 5.9270 2.6278 1.0290 35 1 5.9780 1.7399 -0.5129 36 1 5.8781 3.5172 -0.5122 37 1 4.3942 -0.1816 0.8841 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259984357.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:17 Heat of formation + Delta-G solvation = -72.337830 kcal Electronic energy + Delta-G solvation = -19535.095522 eV Core-core repulsion = 16663.530047 eV Total energy + Delta-G solvation = -2871.565475 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.56482 -39.19242 -38.59082 -36.08383 -33.92627 -32.76460 -30.01142 -28.59209 -28.18600 -27.48093 -26.62343 -23.66382 -22.23718 -20.72983 -19.33194 -18.78675 -17.70101 -17.44066 -16.93271 -16.73595 -16.16904 -15.37420 -15.13582 -14.93772 -14.72892 -14.35251 -14.12102 -13.93172 -13.46688 -13.34100 -13.03208 -12.81782 -12.74586 -12.73395 -12.54338 -12.12833 -12.01093 -11.76176 -11.54537 -11.37064 -10.89332 -10.84918 -10.68538 -9.23823 -8.89260 -8.32177 -6.33189 0.38802 0.50929 1.25486 1.35729 1.43780 2.29111 2.32800 2.76778 3.03557 3.38980 3.99905 4.01373 4.25607 4.29886 4.34318 4.44068 4.48226 4.58602 4.59925 4.68370 4.75867 4.87534 4.94875 4.97256 4.99604 5.07019 5.12695 5.27731 5.36873 5.50813 5.55019 5.62288 5.71703 5.89727 6.04297 6.30243 6.36155 6.74457 6.94067 7.32066 8.82427 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019285 B = 0.011816 C = 0.009124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.551873 B = 2369.074048 C = 3067.932753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.323 6.323 3 C 0.076 3.924 4 C -0.207 4.207 5 C -0.019 4.019 6 C 0.054 3.946 7 C -0.111 4.111 8 C -0.137 4.137 9 C -0.500 4.500 10 H 0.039 0.961 11 C 0.037 3.963 12 N -0.941 5.941 13 Si 0.915 3.085 14 H -0.286 1.286 15 H -0.319 1.319 16 H -0.216 1.216 17 C -0.156 4.156 18 C -0.078 4.078 19 C -0.100 4.100 20 C 0.040 3.960 21 O -0.490 6.490 22 H 0.050 0.950 23 H 0.131 0.869 24 H 0.033 0.967 25 H 0.130 0.870 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.034 0.966 29 H 0.020 0.980 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.262 0.738 33 H 0.148 0.852 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.704 -2.507 -1.077 13.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.237 6.237 3 C 0.030 3.970 4 C -0.226 4.226 5 C -0.019 4.019 6 C 0.053 3.947 7 C -0.169 4.169 8 C -0.194 4.194 9 C -0.538 4.538 10 H 0.057 0.943 11 C -0.160 4.160 12 N -0.581 5.581 13 Si 0.745 3.255 14 H -0.214 1.214 15 H -0.249 1.249 16 H -0.139 1.139 17 C -0.174 4.174 18 C -0.079 4.079 19 C -0.157 4.157 20 C -0.005 4.005 21 O -0.300 6.300 22 H 0.069 0.931 23 H 0.149 0.851 24 H 0.052 0.948 25 H 0.147 0.853 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.054 0.946 29 H 0.039 0.961 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.165 0.835 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 13.632 -2.717 -1.601 13.992 hybrid contribution -1.010 -0.300 1.442 1.786 sum 12.623 -3.017 -0.159 12.979 Atomic orbital electron populations 1.23116 0.77669 1.04876 1.00868 1.85994 1.21997 1.26638 1.89093 1.19826 0.92539 0.84926 0.99691 1.21568 1.01287 0.91983 1.07743 1.20350 0.93938 0.95336 0.92319 1.17720 0.92258 0.89838 0.94834 1.21599 1.00992 0.99056 0.95226 1.22160 1.01006 0.99463 0.96760 1.21114 0.92839 1.39141 1.00687 0.94316 1.25562 0.95731 0.94788 0.99965 1.70034 1.16526 1.44328 1.27197 0.86617 0.83648 0.75281 0.79936 1.21432 1.24894 1.13877 1.21018 0.92425 0.98671 1.05301 1.20278 0.98296 0.90641 0.98642 1.20692 0.87764 1.03842 1.03374 1.17572 0.85398 0.87045 1.10493 1.84784 1.71390 1.39566 1.34241 0.93138 0.85086 0.94777 0.85268 0.92868 0.91374 0.94648 0.96127 0.90790 0.92254 0.92889 0.83460 0.89818 0.90788 0.89708 0.74988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.06 9.81 113.37 1.11 2.17 16 2 O -0.32 -12.78 10.28 -79.62 -0.82 -13.60 16 3 C 0.08 3.12 6.70 22.57 0.15 3.27 16 4 C -0.21 -9.32 5.65 22.35 0.13 -9.19 16 5 C -0.02 -0.78 2.51 -19.86 -0.05 -0.83 16 6 C 0.05 2.33 0.59 -53.67 -0.03 2.30 16 7 C -0.11 -4.11 8.29 71.98 0.60 -3.51 16 8 C -0.14 -5.35 7.72 71.98 0.56 -4.79 16 9 C -0.50 -26.88 7.38 25.60 0.19 -26.69 16 10 H 0.04 2.33 7.99 -2.91 -0.02 2.30 16 11 C 0.04 2.09 4.25 84.65 0.36 2.45 16 12 N -0.94 -56.83 13.96 21.45 0.30 -56.53 16 13 Si 0.91 44.81 22.04 68.60 1.51 46.32 16 14 H -0.29 -13.80 7.00 99.48 0.70 -13.11 16 15 H -0.32 -16.29 7.11 99.48 0.71 -15.58 16 16 H -0.22 -9.73 4.49 99.48 0.45 -9.28 16 17 C -0.16 -5.32 8.21 22.27 0.18 -5.14 16 18 C -0.08 -2.47 5.89 -19.78 -0.12 -2.58 16 19 C -0.10 -2.19 9.79 71.24 0.70 -1.50 16 20 C 0.04 1.43 6.69 22.57 0.15 1.58 16 21 O -0.49 -14.93 12.33 -79.61 -0.98 -15.91 16 22 H 0.05 1.86 7.67 -2.39 -0.02 1.84 16 23 H 0.13 3.55 8.14 -2.39 -0.02 3.53 16 24 H 0.03 1.36 7.65 -2.39 -0.02 1.34 16 25 H 0.13 6.57 3.86 -2.91 -0.01 6.56 16 26 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.07 2.03 7.87 -2.39 -0.02 2.01 16 28 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.02 0.87 2.61 -2.39 -0.01 0.86 16 30 H 0.07 2.30 6.84 -2.39 -0.02 2.28 16 31 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 33 H 0.15 4.11 7.05 -2.91 -0.02 4.09 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 1.58 7.53 -2.39 -0.02 1.56 16 36 H 0.08 1.55 8.09 -2.39 -0.02 1.53 16 37 H 0.39 8.48 9.06 -74.06 -0.67 7.81 16 Total: -1.00 -67.18 285.95 4.08 -63.11 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.14 Total: 19.08 kcal Atomic # 6 Polarization: -46.39 SS G_CDS: 3.92 Total: -42.46 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 0.30 Total: -56.53 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -1.80 Total: -29.51 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.51 Total: 46.32 kcal Total: -67.18 4.08 -63.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259984357.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.232 kcal (2) G-P(sol) polarization free energy of solvation -67.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds