Wall clock time and date at job start Mon Mar 30 2020 06:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.50703 * 109.47171 * 180.02562 * 3 2 1 5 5 C 1.38290 * 119.94416 * 359.97438 * 4 3 2 6 6 C 1.38125 * 120.05491 * 179.97438 * 5 4 3 7 7 C 1.38756 * 119.94330 * 0.02562 * 6 5 4 8 8 O 1.35898 * 120.05480 * 180.02562 * 7 6 5 9 9 C 1.42904 * 116.99825 * 359.97438 * 8 7 6 10 10 C 1.38709 * 119.88810 * 359.97438 * 7 6 5 11 11 C 1.38170 * 119.94602 * 359.70893 * 10 7 6 12 12 C 1.50700 * 119.97308 * 180.31621 * 11 10 7 13 13 C 1.52995 * 109.46872 * 265.24797 * 12 11 10 14 14 C 1.50700 * 109.46872 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00359 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00138 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00402 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99997 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47060 * 89.99792 * 18 16 14 20 20 H 1.48500 * 109.47322 * 210.00486 * 18 16 14 21 21 H 1.48505 * 109.46792 * 330.00090 * 18 16 14 22 22 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 23 23 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 25 25 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 26 26 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 27 27 H 1.07998 * 119.96948 * 0.02562 * 5 4 3 28 28 H 1.07994 * 120.02298 * 180.02562 * 6 5 4 29 29 H 1.09000 * 109.46877 * 299.99629 * 9 8 7 30 30 H 1.08994 * 109.47488 * 59.99744 * 9 8 7 31 31 H 1.08994 * 109.46884 * 180.02562 * 9 8 7 32 32 H 1.08004 * 120.02385 * 180.02562 * 10 7 6 33 33 H 1.09001 * 109.47339 * 25.25052 * 12 11 10 34 34 H 1.08997 * 109.47006 * 145.24889 * 12 11 10 35 35 H 1.08996 * 109.47113 * 299.99828 * 13 12 11 36 36 H 1.08997 * 109.47230 * 60.00229 * 13 12 11 37 37 H 0.97001 * 120.00016 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.1061 -0.0627 -0.0006 6 6 5.4828 -0.1744 -0.0017 7 6 6.2704 0.9679 -0.0023 8 8 7.6251 0.8606 -0.0040 9 6 8.1713 -0.4600 -0.0044 10 6 5.6726 2.2196 -0.0024 11 6 4.2951 2.3261 -0.0079 12 6 3.6450 3.6856 -0.0152 13 6 3.3119 4.0993 1.4196 14 6 2.6624 5.4591 1.4124 15 1 2.5028 5.9764 0.4779 16 6 2.2720 6.0429 2.5989 17 7 1.7047 7.2295 2.5926 18 14 2.5474 5.1480 4.2153 19 1 3.8792 5.5121 4.7620 20 1 1.4912 5.5383 5.1834 21 1 2.4906 3.6820 3.9852 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 3.4926 -0.9515 -0.0005 28 1 5.9457 -1.1501 -0.0021 29 1 7.8364 -0.9918 0.8862 30 1 7.8343 -0.9923 -0.8937 31 1 9.2597 -0.4029 -0.0052 32 1 6.2836 3.1102 -0.0033 33 1 4.3284 4.4128 -0.4536 34 1 2.7287 3.6471 -0.6042 35 1 2.6284 3.3721 1.8580 36 1 4.2282 4.1378 2.0087 37 1 1.4303 7.6403 3.4274 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259984489.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:25 Heat of formation + Delta-G solvation = -72.319447 kcal Electronic energy + Delta-G solvation = -18113.675538 eV Core-core repulsion = 15242.110860 eV Total energy + Delta-G solvation = -2871.564678 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.08036 -38.30497 -36.96197 -34.02330 -32.11490 -31.16805 -29.51638 -27.83482 -26.52402 -25.18706 -24.89446 -21.89697 -21.06741 -19.95357 -17.57972 -16.69040 -16.62554 -15.94651 -15.74457 -15.58903 -15.31948 -14.33298 -14.20504 -13.79940 -13.18161 -13.09093 -12.93547 -12.75947 -12.56521 -12.15917 -11.93223 -11.54178 -11.48438 -11.09182 -10.92007 -10.80000 -10.56495 -10.12363 -9.93986 -9.71306 -9.55661 -9.19493 -8.54799 -8.40044 -7.78114 -6.06125 -4.04534 1.63273 1.68975 3.30927 3.36773 3.38319 3.43174 3.87471 4.00265 4.44445 4.93823 5.08504 5.09307 5.14654 5.22546 5.28085 5.38382 5.41093 5.45569 5.55864 5.67438 5.69124 5.74604 5.82630 5.94202 6.18130 6.36278 6.43414 6.51308 6.60615 6.75433 6.92758 7.04063 7.25712 7.33837 7.41990 7.57843 7.76250 8.50825 8.98421 9.56430 11.07068 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.016000 B = 0.006892 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.603371 B = 4061.733988 C = 5209.629113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.105 3.895 4 C -0.125 4.125 5 C -0.059 4.059 6 C -0.225 4.225 7 C 0.123 3.877 8 O -0.320 6.320 9 C 0.030 3.970 10 C -0.151 4.151 11 C -0.020 4.020 12 C -0.074 4.074 13 C -0.006 4.006 14 C -0.521 4.521 15 H 0.073 0.927 16 C 0.069 3.931 17 N -0.903 5.903 18 Si 0.875 3.125 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.265 1.265 22 H 0.041 0.959 23 H 0.082 0.918 24 H 0.043 0.957 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.130 0.870 28 H 0.122 0.878 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.132 0.868 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.017 0.983 36 H 0.015 0.985 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.341 -16.914 -5.664 18.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.313 6.313 3 C 0.029 3.971 4 C -0.125 4.125 5 C -0.077 4.077 6 C -0.243 4.243 7 C 0.078 3.922 8 O -0.234 6.234 9 C -0.066 4.066 10 C -0.169 4.169 11 C -0.020 4.020 12 C -0.112 4.112 13 C -0.043 4.043 14 C -0.559 4.559 15 H 0.092 0.908 16 C -0.132 4.132 17 N -0.541 5.541 18 Si 0.702 3.298 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.189 1.189 22 H 0.060 0.940 23 H 0.100 0.900 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.148 0.852 28 H 0.140 0.860 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.114 0.886 32 H 0.149 0.851 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.035 0.965 36 H 0.033 0.967 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.517 -16.791 -5.547 18.524 hybrid contribution -0.095 -0.421 0.984 1.075 sum 5.422 -17.212 -4.563 18.614 Atomic orbital electron populations 1.22711 0.81042 1.02282 1.00400 1.87758 1.19611 1.28372 1.95604 1.21311 0.90096 0.84038 1.01641 1.19422 0.94074 0.93122 1.05929 1.20689 0.93311 0.97508 0.96182 1.21093 0.94707 0.97120 1.11403 1.19024 0.81824 0.94333 0.97016 1.86057 1.18527 1.29759 1.89033 1.22982 0.99271 0.83156 1.01166 1.20282 0.93958 0.95296 1.07393 1.19884 0.92150 0.96041 0.93967 1.20702 0.99573 0.90194 1.00702 1.19545 0.96500 0.97086 0.91175 1.21121 1.39024 1.00779 0.94975 0.90847 1.24991 0.94559 0.94659 0.99033 1.69911 1.41540 1.15468 1.27220 0.86843 0.78129 0.80933 0.83852 1.20186 1.21347 1.18933 0.94027 0.89952 0.93786 0.91903 0.90908 0.85215 0.86019 0.92868 0.92897 0.88624 0.85054 0.91195 0.91319 0.96469 0.96689 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.49 16 2 O -0.39 -5.90 9.18 -35.23 -0.32 -6.22 16 3 C 0.10 1.70 5.12 36.01 0.18 1.89 16 4 C -0.13 -2.14 5.88 -104.60 -0.62 -2.76 16 5 C -0.06 -0.91 9.37 -39.60 -0.37 -1.28 16 6 C -0.22 -3.25 9.04 -39.43 -0.36 -3.61 16 7 C 0.12 1.94 6.69 -39.22 -0.26 1.68 16 8 O -0.32 -4.61 10.50 -19.42 -0.20 -4.81 16 9 C 0.03 0.28 9.81 101.05 0.99 1.27 16 10 C -0.15 -2.61 9.62 -39.43 -0.38 -2.99 16 11 C -0.02 -0.37 5.13 -104.64 -0.54 -0.90 16 12 C -0.07 -1.48 4.78 -27.89 -0.13 -1.61 16 13 C -0.01 -0.14 4.01 -27.89 -0.11 -0.25 16 14 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 15 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 16 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 17 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 18 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 21 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 22 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.96 7.48 -51.93 -0.39 0.58 16 26 H 0.07 1.28 6.76 -51.93 -0.35 0.93 16 27 H 0.13 1.85 7.00 -52.49 -0.37 1.48 16 28 H 0.12 1.41 6.30 -52.49 -0.33 1.08 16 29 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 30 H 0.05 0.44 7.66 -51.93 -0.40 0.05 16 31 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.13 2.19 8.06 -52.48 -0.42 1.77 16 33 H 0.07 1.36 8.05 -51.93 -0.42 0.94 16 34 H 0.07 1.31 6.82 -51.93 -0.35 0.96 16 35 H 0.02 0.41 5.84 -51.93 -0.30 0.11 16 36 H 0.01 0.36 7.57 -51.93 -0.39 -0.03 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 305.52 15.07 4.60 4.60 Total: -1.00 -31.68 305.52 -6.13 -37.81 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -5.40 Total: -1.50 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -0.91 Total: -20.17 kcal Atomic # 7 Polarization: -27.69 SS G_CDS: 0.77 Total: -26.92 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -0.53 Total: -11.04 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.68 -6.13 -37.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259984489.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.514 kcal (2) G-P(sol) polarization free energy of solvation -31.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds