Wall clock time and date at job start Mon Mar 30 2020 06:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.50703 * 109.47171 * 180.02562 * 3 2 1 5 5 C 1.38290 * 119.94416 * 359.97438 * 4 3 2 6 6 C 1.38125 * 120.05491 * 179.97438 * 5 4 3 7 7 C 1.38756 * 119.94330 * 0.02562 * 6 5 4 8 8 O 1.35898 * 120.05480 * 180.02562 * 7 6 5 9 9 C 1.42904 * 116.99825 * 359.97438 * 8 7 6 10 10 C 1.38709 * 119.88810 * 359.97438 * 7 6 5 11 11 C 1.38170 * 119.94602 * 359.70893 * 10 7 6 12 12 C 1.50700 * 119.97308 * 180.31621 * 11 10 7 13 13 C 1.52995 * 109.46872 * 265.24797 * 12 11 10 14 14 C 1.50700 * 109.46872 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00359 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00138 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00402 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99997 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47060 * 89.99792 * 18 16 14 20 20 H 1.48500 * 109.47322 * 210.00486 * 18 16 14 21 21 H 1.48505 * 109.46792 * 330.00090 * 18 16 14 22 22 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 23 23 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 25 25 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 26 26 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 27 27 H 1.07998 * 119.96948 * 0.02562 * 5 4 3 28 28 H 1.07994 * 120.02298 * 180.02562 * 6 5 4 29 29 H 1.09000 * 109.46877 * 299.99629 * 9 8 7 30 30 H 1.08994 * 109.47488 * 59.99744 * 9 8 7 31 31 H 1.08994 * 109.46884 * 180.02562 * 9 8 7 32 32 H 1.08004 * 120.02385 * 180.02562 * 10 7 6 33 33 H 1.09001 * 109.47339 * 25.25052 * 12 11 10 34 34 H 1.08997 * 109.47006 * 145.24889 * 12 11 10 35 35 H 1.08996 * 109.47113 * 299.99828 * 13 12 11 36 36 H 1.08997 * 109.47230 * 60.00229 * 13 12 11 37 37 H 0.97001 * 120.00016 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.1061 -0.0627 -0.0006 6 6 5.4828 -0.1744 -0.0017 7 6 6.2704 0.9679 -0.0023 8 8 7.6251 0.8606 -0.0040 9 6 8.1713 -0.4600 -0.0044 10 6 5.6726 2.2196 -0.0024 11 6 4.2951 2.3261 -0.0079 12 6 3.6450 3.6856 -0.0152 13 6 3.3119 4.0993 1.4196 14 6 2.6624 5.4591 1.4124 15 1 2.5028 5.9764 0.4779 16 6 2.2720 6.0429 2.5989 17 7 1.7047 7.2295 2.5926 18 14 2.5474 5.1480 4.2153 19 1 3.8792 5.5121 4.7620 20 1 1.4912 5.5383 5.1834 21 1 2.4906 3.6820 3.9852 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 3.4926 -0.9515 -0.0005 28 1 5.9457 -1.1501 -0.0021 29 1 7.8364 -0.9918 0.8862 30 1 7.8343 -0.9923 -0.8937 31 1 9.2597 -0.4029 -0.0052 32 1 6.2836 3.1102 -0.0033 33 1 4.3284 4.4128 -0.4536 34 1 2.7287 3.6471 -0.6042 35 1 2.6284 3.3721 1.8580 36 1 4.2282 4.1378 2.0087 37 1 1.4303 7.6403 3.4274 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259984489.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:24 Heat of formation + Delta-G solvation = -91.850991 kcal Electronic energy + Delta-G solvation = -18114.522489 eV Core-core repulsion = 15242.110860 eV Total energy + Delta-G solvation = -2872.411629 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.25623 -39.43486 -38.11611 -35.81330 -34.01777 -32.34223 -31.13415 -28.87841 -27.46652 -26.87441 -26.06181 -23.42566 -22.57019 -21.34105 -19.14376 -18.38996 -17.84843 -17.07291 -16.87427 -16.56544 -16.39451 -16.33665 -15.52211 -15.09895 -14.84699 -14.42344 -14.29871 -14.11677 -14.06172 -13.46784 -13.15971 -12.93773 -12.85017 -12.51332 -12.22564 -12.16610 -11.87165 -11.75763 -11.62658 -11.55227 -11.24536 -10.80423 -10.67452 -9.71855 -8.99113 -8.30615 -6.34057 0.37549 0.45053 1.33568 1.34571 1.46662 2.33960 2.38949 2.74583 2.78219 3.04776 3.87357 3.89462 4.01042 4.22674 4.32914 4.34879 4.41674 4.43220 4.48092 4.58139 4.59360 4.64286 4.73293 4.74926 4.82629 4.87546 4.94616 5.15451 5.26840 5.38154 5.42149 5.45480 5.60494 5.74147 5.85116 6.20772 6.26816 6.49043 6.73192 7.30503 8.85891 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.016000 B = 0.006892 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.603371 B = 4061.733988 C = 5209.629113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.110 3.890 4 C -0.139 4.139 5 C -0.058 4.058 6 C -0.213 4.213 7 C 0.122 3.878 8 O -0.337 6.337 9 C 0.018 3.982 10 C -0.168 4.168 11 C -0.036 4.036 12 C -0.065 4.065 13 C 0.001 3.999 14 C -0.528 4.528 15 H 0.039 0.961 16 C 0.011 3.989 17 N -0.948 5.948 18 Si 0.940 3.060 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.251 1.251 22 H 0.049 0.951 23 H 0.109 0.891 24 H 0.041 0.959 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.145 0.855 28 H 0.156 0.844 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.127 0.873 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.019 0.981 36 H 0.012 0.988 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.308 -19.982 -5.196 21.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C 0.034 3.966 4 C -0.139 4.139 5 C -0.076 4.076 6 C -0.231 4.231 7 C 0.077 3.923 8 O -0.251 6.251 9 C -0.076 4.076 10 C -0.187 4.187 11 C -0.036 4.036 12 C -0.102 4.102 13 C -0.036 4.036 14 C -0.566 4.566 15 H 0.057 0.943 16 C -0.186 4.186 17 N -0.588 5.588 18 Si 0.764 3.236 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.175 1.175 22 H 0.068 0.932 23 H 0.127 0.873 24 H 0.059 0.941 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.163 0.837 28 H 0.174 0.826 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.145 0.855 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.038 0.962 36 H 0.031 0.969 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.493 -19.877 -5.093 21.522 hybrid contribution -0.349 0.488 0.745 0.957 sum 6.144 -19.389 -4.348 20.799 Atomic orbital electron populations 1.22955 0.79380 1.04152 1.00683 1.87730 1.21403 1.27365 1.95623 1.21149 0.90021 0.84662 1.00804 1.19569 0.94430 0.93543 1.06397 1.20900 0.94018 0.97224 0.95464 1.21435 0.94199 0.98215 1.09262 1.19061 0.82854 0.94051 0.96344 1.86046 1.17549 1.32791 1.88711 1.23359 1.00610 0.81292 1.02378 1.20347 0.93770 0.96314 1.08237 1.19634 0.92649 0.95095 0.96252 1.20465 0.99822 0.91715 0.98184 1.19416 0.95740 0.94596 0.93839 1.21437 1.38923 1.02527 0.93754 0.94276 1.25879 0.94323 0.95407 1.02992 1.70049 1.43073 1.17288 1.28432 0.85803 0.78393 0.80264 0.79139 1.19370 1.20563 1.17517 0.93212 0.87313 0.94077 0.91659 0.92875 0.83702 0.82603 0.91761 0.91410 0.86295 0.85494 0.91652 0.91219 0.96250 0.96931 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 11.01 113.37 1.25 1.77 16 2 O -0.40 -11.34 9.18 -148.98 -1.37 -12.71 16 3 C 0.11 3.49 5.12 71.24 0.36 3.86 16 4 C -0.14 -4.61 5.88 -19.85 -0.12 -4.73 16 5 C -0.06 -1.66 9.37 22.26 0.21 -1.45 16 6 C -0.21 -5.47 9.04 22.37 0.20 -5.27 16 7 C 0.12 3.62 6.69 22.51 0.15 3.77 16 8 O -0.34 -8.89 10.50 -92.40 -0.97 -9.86 16 9 C 0.02 0.27 9.81 113.37 1.11 1.39 16 10 C -0.17 -5.73 9.62 22.37 0.22 -5.52 16 11 C -0.04 -1.30 5.13 -19.88 -0.10 -1.40 16 12 C -0.06 -2.62 4.78 29.85 0.14 -2.48 16 13 C 0.00 0.07 4.01 29.85 0.12 0.19 16 14 C -0.53 -30.61 9.66 25.60 0.25 -30.36 16 15 H 0.04 2.46 7.99 -2.91 -0.02 2.44 16 16 C 0.01 0.66 5.47 84.65 0.46 1.12 16 17 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 18 Si 0.94 45.14 27.47 68.60 1.88 47.02 16 19 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.25 -11.44 6.54 99.48 0.65 -10.79 16 22 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.07 2.00 7.48 -2.39 -0.02 1.98 16 26 H 0.05 1.88 6.76 -2.39 -0.02 1.86 16 27 H 0.15 3.66 7.00 -2.91 -0.02 3.64 16 28 H 0.16 2.87 6.30 -2.91 -0.02 2.85 16 29 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 30 H 0.07 0.86 7.66 -2.39 -0.02 0.85 16 31 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 33 H 0.06 2.64 8.05 -2.39 -0.02 2.62 16 34 H 0.07 2.75 6.82 -2.39 -0.02 2.73 16 35 H 0.02 0.92 5.84 -2.39 -0.01 0.91 16 36 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 37 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -68.67 305.52 5.10 -63.57 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.99 Total: 10.36 kcal Atomic # 6 Polarization: -43.36 SS G_CDS: 4.26 Total: -39.11 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.30 Total: -59.28 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -2.34 Total: -22.57 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Total: -68.67 5.10 -63.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259984489.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.277 kcal (2) G-P(sol) polarization free energy of solvation -68.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds