Wall clock time and date at job start Mon Mar 30 2020 06:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46586 * 2 1 4 4 C 1.50700 * 109.46828 * 119.99328 * 2 1 3 5 5 H 1.08004 * 119.99816 * 120.00599 * 4 2 1 6 6 C 1.37874 * 120.00451 * 299.99730 * 4 2 1 7 7 N 1.31514 * 119.99591 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00217 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47224 * 90.00188 * 8 6 4 10 10 H 1.48497 * 109.47289 * 210.00660 * 8 6 4 11 11 H 1.48504 * 109.46922 * 330.00314 * 8 6 4 12 12 C 1.50695 * 109.47085 * 239.99540 * 2 1 3 13 13 C 1.34515 * 125.78599 * 120.00092 * 12 2 1 14 14 C 1.41388 * 106.83843 * 180.02562 * 13 12 2 15 15 C 1.34506 * 106.83998 * 359.97438 * 14 13 12 16 16 C 1.50708 * 125.79179 * 179.97438 * 15 14 13 17 17 C 1.53176 * 109.54201 * 239.57816 * 16 15 14 18 18 C 1.53099 * 109.16017 * 183.15176 * 17 16 15 19 19 O 1.42897 * 109.41479 * 57.60247 * 18 17 16 20 20 C 1.42905 * 114.10207 * 298.83988 * 19 18 17 21 21 C 1.53096 * 109.41183 * 61.16113 * 20 19 18 22 22 O 1.34304 * 125.79068 * 300.04079 * 12 2 1 23 23 H 1.08997 * 109.47119 * 60.00135 * 1 2 3 24 24 H 1.09000 * 109.47408 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47327 * 300.00457 * 1 2 3 26 26 H 0.97006 * 119.99419 * 179.97438 * 7 6 4 27 27 H 1.08001 * 126.58408 * 359.77293 * 13 12 2 28 28 H 1.08000 * 126.57885 * 180.02562 * 14 13 12 29 29 H 1.09001 * 109.53828 * 359.83778 * 16 15 14 30 30 H 1.09006 * 109.51841 * 303.04689 * 17 16 15 31 31 H 1.08993 * 109.52741 * 63.24305 * 17 16 15 32 32 H 1.09003 * 109.47491 * 297.62112 * 18 17 16 33 33 H 1.08994 * 109.47808 * 177.58982 * 18 17 16 34 34 H 1.09001 * 109.47771 * 301.17977 * 20 19 18 35 35 H 1.09004 * 109.48014 * 181.14296 * 20 19 18 36 36 H 1.08992 * 109.52063 * 182.48429 * 21 20 19 37 37 H 1.09000 * 109.52156 * 62.29717 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1316 6 6 1.6993 -0.2391 2.4828 7 7 0.9428 0.8299 2.6033 8 14 2.3224 -1.1192 4.0081 9 1 3.6304 -0.5437 4.4119 10 1 1.3444 -0.9486 5.1123 11 1 2.4880 -2.5650 3.7124 12 6 2.0323 -0.7105 -1.2304 13 6 2.8089 -0.1720 -2.1877 14 6 3.0377 -1.1849 -3.1472 15 6 2.3878 -2.2817 -2.7186 16 6 2.3470 -3.6136 -3.4228 17 6 0.8951 -3.9758 -3.7502 18 6 0.8565 -5.3643 -4.3938 19 8 1.4489 -6.3155 -3.5071 20 6 2.8206 -6.0542 -3.2029 21 6 2.9381 -4.6934 -2.5113 22 8 1.7799 -1.9884 -1.5575 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.7082 1.1612 3.4843 27 1 3.1823 0.8409 -2.2195 28 1 3.6229 -1.0953 -4.0505 29 1 2.9266 -3.5567 -4.3441 30 1 0.3058 -3.9829 -2.8331 31 1 0.4838 -3.2416 -4.4429 32 1 1.4123 -5.3459 -5.3313 33 1 -0.1782 -5.6454 -4.5899 34 1 3.4020 -6.0449 -4.1248 35 1 3.2007 -6.8324 -2.5410 36 1 3.9878 -4.4725 -2.3181 37 1 2.3901 -4.7150 -1.5694 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260006751.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:38 Heat of formation + Delta-G solvation = -72.072605 kcal Electronic energy + Delta-G solvation = -18512.435046 eV Core-core repulsion = 15640.881072 eV Total energy + Delta-G solvation = -2871.553974 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.42086 -40.16566 -36.55129 -35.30085 -33.79347 -32.81391 -32.06375 -29.28022 -27.33270 -25.81731 -24.50027 -23.24460 -22.52546 -21.32338 -20.59737 -18.53510 -17.79230 -17.05720 -16.96479 -16.60665 -16.19828 -15.69630 -15.39137 -14.91903 -14.82817 -14.74089 -14.26538 -13.57157 -13.45308 -13.30821 -13.12773 -12.95389 -12.86486 -12.43729 -12.31457 -12.29682 -12.24302 -11.81262 -11.69419 -11.25248 -11.18263 -10.65204 -10.58088 -10.52099 -9.01712 -8.18758 -6.34563 0.97997 1.37814 1.38754 1.49565 1.82845 2.22197 2.38803 2.98310 3.08401 3.58137 3.80080 3.82825 4.03133 4.19639 4.26681 4.30386 4.34734 4.52487 4.61234 4.69488 4.72496 4.77918 4.86061 4.90044 4.98228 4.99252 5.07006 5.12710 5.15740 5.31145 5.38962 5.46590 5.66120 5.80017 5.91177 6.15764 6.27897 6.53114 6.69790 7.33395 8.85355 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024794 B = 0.005842 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.056249 B = 4792.129260 C = 5300.428371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.107 3.893 3 H 0.039 0.961 4 C -0.534 4.534 5 H 0.042 0.958 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.958 3.042 9 H -0.270 1.270 10 H -0.275 1.275 11 H -0.275 1.275 12 C 0.021 3.979 13 C -0.254 4.254 14 C -0.204 4.204 15 C -0.043 4.043 16 C 0.002 3.998 17 C -0.151 4.151 18 C 0.064 3.936 19 O -0.406 6.406 20 C 0.066 3.934 21 C -0.153 4.153 22 O -0.189 6.189 23 H 0.031 0.969 24 H 0.023 0.977 25 H 0.071 0.929 26 H 0.267 0.733 27 H 0.148 0.852 28 H 0.174 0.826 29 H 0.128 0.872 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.178 -10.162 -14.714 18.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.088 3.912 3 H 0.057 0.943 4 C -0.572 4.572 5 H 0.061 0.939 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.783 3.217 9 H -0.196 1.196 10 H -0.200 1.200 11 H -0.200 1.200 12 C -0.029 4.029 13 C -0.273 4.273 14 C -0.223 4.223 15 C -0.093 4.093 16 C -0.016 4.016 17 C -0.189 4.189 18 C -0.012 4.012 19 O -0.326 6.326 20 C -0.010 4.010 21 C -0.191 4.191 22 O -0.086 6.086 23 H 0.050 0.950 24 H 0.042 0.958 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.166 0.834 28 H 0.191 0.809 29 H 0.146 0.854 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.124 0.876 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.101 0.899 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.814 -10.404 -14.338 17.937 hybrid contribution 0.387 0.542 1.131 1.312 sum 3.201 -9.862 -13.207 16.791 Atomic orbital electron populations 1.21613 0.96824 0.99111 1.00530 1.17450 0.93612 0.93539 0.86554 0.94333 1.21208 1.32104 1.12575 0.91318 0.93921 1.25672 0.94924 0.95654 1.01650 1.69966 1.36815 1.23650 1.24567 0.85555 0.78519 0.78791 0.78850 1.19586 1.20010 1.19991 1.23319 0.99654 0.81618 0.98312 1.21748 1.06428 1.02062 0.97065 1.21751 1.05764 0.92164 1.02585 1.22875 1.00275 0.98855 0.87262 1.19907 0.98257 0.85917 0.97505 1.22269 0.95505 0.99377 1.01729 1.22713 1.00057 0.86317 0.92088 1.87911 1.26449 1.50688 1.67522 1.22685 0.82629 0.95397 1.00314 1.22276 1.02005 0.95958 0.98859 1.83957 1.59967 1.28912 1.35731 0.95014 0.95796 0.91048 0.92372 0.83388 0.80866 0.85407 0.93596 0.89419 0.90293 0.87564 0.90234 0.87794 0.89883 0.93794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.30 8.95 71.98 0.64 -5.66 16 2 C 0.11 5.72 2.71 -12.29 -0.03 5.68 16 3 H 0.04 2.16 8.10 -2.39 -0.02 2.14 16 4 C -0.53 -30.94 8.55 25.60 0.22 -30.72 16 5 H 0.04 2.53 7.74 -2.91 -0.02 2.51 16 6 C 0.02 1.16 5.30 84.65 0.45 1.61 16 7 N -0.91 -52.37 11.32 21.45 0.24 -52.12 16 8 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 12 C 0.02 1.03 5.76 24.83 0.14 1.17 16 13 C -0.25 -10.41 10.78 22.19 0.24 -10.17 16 14 C -0.20 -6.90 10.78 22.19 0.24 -6.66 16 15 C -0.04 -1.53 5.84 24.83 0.15 -1.38 16 16 C 0.00 0.06 2.68 -11.42 -0.03 0.02 16 17 C -0.15 -3.63 5.41 30.69 0.17 -3.46 16 18 C 0.06 1.20 6.84 72.02 0.49 1.70 16 19 O -0.41 -9.58 10.76 -148.98 -1.60 -11.18 16 20 C 0.07 1.29 6.84 72.01 0.49 1.78 16 21 C -0.15 -3.89 5.41 30.68 0.17 -3.72 16 22 O -0.19 -8.64 10.65 -2.51 -0.03 -8.66 16 23 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 3.91 6.07 -2.39 -0.01 3.89 16 26 H 0.27 14.43 8.31 -92.70 -0.77 13.66 16 27 H 0.15 5.56 8.06 -2.91 -0.02 5.54 16 28 H 0.17 4.36 8.06 -2.91 -0.02 4.34 16 29 H 0.13 2.34 8.10 -2.39 -0.02 2.32 16 30 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -66.09 305.30 5.00 -61.09 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 1.03 Total: 14.22 kcal Atomic # 6 Polarization: -53.14 SS G_CDS: 3.33 Total: -49.81 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: 0.24 Total: -52.12 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -1.63 Total: -19.84 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -66.09 5.00 -61.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260006751.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.983 kcal (2) G-P(sol) polarization free energy of solvation -66.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds