Wall clock time and date at job start Mon Mar 30 2020 06:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99524 * 2 1 4 4 C 1.53003 * 109.46939 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47160 * 54.99526 * 4 3 2 6 6 O 1.42905 * 109.46783 * 294.99586 * 4 3 2 7 7 C 1.42899 * 113.99861 * 149.99925 * 6 4 3 8 8 C 1.50699 * 109.46960 * 175.00099 * 4 3 2 9 9 C 1.38236 * 119.99576 * 264.99512 * 8 4 3 10 10 C 1.38240 * 120.00058 * 179.97438 * 9 8 4 11 11 C 1.38232 * 119.99631 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99860 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47064 * 89.99959 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.38234 * 120.00312 * 0.27932 * 11 10 9 22 22 C 1.38235 * 119.99933 * 359.51395 * 21 11 10 23 23 H 1.09004 * 109.47103 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47334 * 300.00173 * 1 2 3 25 25 H 1.08998 * 109.47521 * 60.00653 * 1 2 3 26 26 H 1.09002 * 109.47340 * 59.99818 * 3 2 1 27 27 H 1.08996 * 109.47047 * 299.99245 * 3 2 1 28 28 H 1.08999 * 109.47331 * 300.00429 * 7 6 4 29 29 H 1.09008 * 109.46851 * 60.00270 * 7 6 4 30 30 H 1.08997 * 109.47502 * 180.02562 * 7 6 4 31 31 H 1.08002 * 120.00221 * 359.97438 * 9 8 4 32 32 H 1.07996 * 119.99763 * 180.02562 * 10 9 8 33 33 H 1.09002 * 109.47152 * 330.00052 * 12 11 10 34 34 H 1.09001 * 109.46980 * 210.00152 * 12 11 10 35 35 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 36 36 H 1.07998 * 120.00015 * 179.72855 * 21 11 10 37 37 H 1.08002 * 120.00360 * 180.27290 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8514 0.5684 -0.8408 6 8 3.9647 0.5799 1.2221 7 6 5.1681 -0.1814 1.1020 8 6 4.1478 2.5562 -0.1232 9 6 4.5164 3.0389 -1.3650 10 6 5.0778 4.2971 -1.4787 11 6 5.2700 5.0726 -0.3507 12 6 5.8814 6.4444 -0.4747 13 6 4.7908 7.4636 -0.6818 14 1 3.7582 7.1495 -0.7194 15 6 5.1112 8.7973 -0.8222 16 7 6.3686 9.1799 -0.7759 17 14 3.7593 10.0607 -1.0782 18 1 2.8316 10.0348 0.0811 19 1 4.3618 11.4124 -1.2005 20 1 3.0098 9.7392 -2.3193 21 6 4.9063 4.5878 0.8917 22 6 4.3410 3.3314 1.0049 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 1.6884 1.8465 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 5.0195 -0.9845 0.3802 29 1 5.9760 0.4671 0.7629 30 1 5.4266 -0.6078 2.0713 31 1 4.3658 2.4331 -2.2463 32 1 5.3653 4.6743 -2.4489 33 1 6.5625 6.4631 -1.3255 34 1 6.4314 6.6808 0.4362 35 1 6.5940 10.1181 -0.8751 36 1 5.0605 5.1920 1.7734 37 1 4.0527 2.9543 1.9751 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260009217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:55 Heat of formation + Delta-G solvation = -79.513674 kcal Electronic energy + Delta-G solvation = -17830.391321 eV Core-core repulsion = 14958.514678 eV Total energy + Delta-G solvation = -2871.876643 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.45463 -37.91390 -37.01275 -33.63998 -32.05170 -30.29400 -29.79909 -27.20047 -26.55257 -25.60550 -23.59749 -22.13036 -21.76030 -19.90517 -16.94329 -16.75930 -16.34649 -15.88036 -15.56134 -15.30310 -14.85431 -14.32994 -14.19209 -14.08535 -13.63244 -12.78717 -12.63615 -12.53373 -12.27075 -12.08126 -11.59019 -11.41975 -11.33285 -11.11253 -10.94216 -10.66415 -10.58555 -10.20959 -9.79755 -9.69399 -9.51184 -9.42542 -8.44762 -8.30024 -7.80565 -6.06745 -4.10864 1.94153 2.04231 3.30188 3.34403 3.37422 3.62003 3.84541 4.34796 4.51243 5.04125 5.08523 5.10438 5.21369 5.27726 5.32356 5.38376 5.45997 5.48575 5.52342 5.57070 5.61101 5.70616 5.76826 5.98256 6.18505 6.24087 6.62112 6.67197 6.93915 7.05014 7.14784 7.17506 7.33563 7.47320 7.69650 7.82260 7.88847 8.28815 8.94055 9.53020 11.03189 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028474 B = 0.004612 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.117875 B = 6069.794182 C = 6674.731226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.069 3.931 4 C 0.144 3.856 5 H 0.071 0.929 6 O -0.374 6.374 7 C 0.034 3.966 8 C -0.154 4.154 9 C -0.110 4.110 10 C -0.127 4.127 11 C -0.025 4.025 12 C 0.046 3.954 13 C -0.513 4.513 14 H 0.056 0.944 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.129 4.129 22 C -0.092 4.092 23 H 0.083 0.917 24 H 0.041 0.959 25 H 0.040 0.960 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.039 0.961 29 H 0.043 0.957 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.263 0.737 36 H 0.119 0.881 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.467 -16.858 1.216 18.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.008 4.008 4 C 0.086 3.914 5 H 0.089 0.911 6 O -0.293 6.293 7 C -0.062 4.062 8 C -0.154 4.154 9 C -0.128 4.128 10 C -0.145 4.145 11 C -0.025 4.025 12 C 0.009 3.991 13 C -0.551 4.551 14 H 0.075 0.925 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.147 4.147 22 C -0.110 4.110 23 H 0.102 0.898 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.137 0.863 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.340 -16.844 1.379 18.050 hybrid contribution -0.735 1.048 -0.412 1.345 sum -7.075 -15.795 0.967 17.334 Atomic orbital electron populations 1.22720 0.81233 1.02481 1.00032 1.87877 1.19478 1.27957 1.95467 1.22678 0.92017 0.84683 1.01410 1.20738 0.91891 0.91002 0.87721 0.91143 1.87897 1.41989 1.67666 1.31731 1.22732 0.87016 0.94443 1.02054 1.19845 1.05050 0.96268 0.94279 1.20857 0.99636 0.96422 0.95927 1.21047 1.00815 0.93747 0.98917 1.20764 0.92952 0.96784 0.91997 1.18385 0.95930 0.86475 0.98311 1.21004 0.92906 0.91176 1.50013 0.92531 1.25008 0.95536 0.98519 0.95209 1.69946 1.16701 1.16667 1.49981 0.86590 0.81904 0.80303 0.78850 1.20144 1.21191 1.20165 1.21121 1.00327 0.95256 0.97950 1.20853 0.98549 0.93894 0.97749 0.89812 0.94047 0.94157 0.92178 0.91675 0.94252 0.93883 0.89931 0.87109 0.86303 0.95286 0.95267 0.92745 0.86333 0.86513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.42 16 2 O -0.39 -5.09 10.67 -40.08 -0.43 -5.52 16 3 C 0.07 0.90 5.58 37.16 0.21 1.11 16 4 C 0.14 2.02 2.60 -27.88 -0.07 1.95 16 5 H 0.07 0.92 7.70 -51.93 -0.40 0.52 16 6 O -0.37 -5.40 9.46 -40.08 -0.38 -5.78 16 7 C 0.03 0.39 10.81 101.05 1.09 1.48 16 8 C -0.15 -2.47 4.96 -104.62 -0.52 -2.99 16 9 C -0.11 -1.81 9.68 -39.58 -0.38 -2.19 16 10 C -0.13 -2.45 9.70 -39.58 -0.38 -2.84 16 11 C -0.02 -0.54 5.07 -104.62 -0.53 -1.07 16 12 C 0.05 1.17 5.10 -29.03 -0.15 1.03 16 13 C -0.51 -14.32 9.09 -34.44 -0.31 -14.63 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 17 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 21 C -0.13 -2.53 9.70 -39.58 -0.38 -2.92 16 22 C -0.09 -1.60 9.35 -39.58 -0.37 -1.97 16 23 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16 29 H 0.04 0.51 8.14 -51.92 -0.42 0.08 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 33 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 34 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 37 H 0.12 1.86 7.63 -52.49 -0.40 1.46 16 LS Contribution 319.19 15.07 4.81 4.81 Total: -1.00 -30.51 319.19 -6.90 -37.40 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -5.83 Total: -1.70 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -0.79 Total: -20.06 kcal Atomic # 7 Polarization: -26.32 SS G_CDS: 0.74 Total: -25.59 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -0.81 Total: -11.30 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.51 -6.90 -37.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260009217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.109 kcal (2) G-P(sol) polarization free energy of solvation -30.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds