Wall clock time and date at job start Mon Mar 30 2020 06:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99524 * 2 1 4 4 C 1.53003 * 109.46939 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47160 * 54.99526 * 4 3 2 6 6 O 1.42905 * 109.46783 * 294.99586 * 4 3 2 7 7 C 1.42899 * 113.99861 * 149.99925 * 6 4 3 8 8 C 1.50699 * 109.46960 * 175.00099 * 4 3 2 9 9 C 1.38236 * 119.99576 * 264.99512 * 8 4 3 10 10 C 1.38240 * 120.00058 * 179.97438 * 9 8 4 11 11 C 1.38232 * 119.99631 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99860 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47064 * 89.99959 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.38234 * 120.00312 * 0.27932 * 11 10 9 22 22 C 1.38235 * 119.99933 * 359.51395 * 21 11 10 23 23 H 1.09004 * 109.47103 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47334 * 300.00173 * 1 2 3 25 25 H 1.08998 * 109.47521 * 60.00653 * 1 2 3 26 26 H 1.09002 * 109.47340 * 59.99818 * 3 2 1 27 27 H 1.08996 * 109.47047 * 299.99245 * 3 2 1 28 28 H 1.08999 * 109.47331 * 300.00429 * 7 6 4 29 29 H 1.09008 * 109.46851 * 60.00270 * 7 6 4 30 30 H 1.08997 * 109.47502 * 180.02562 * 7 6 4 31 31 H 1.08002 * 120.00221 * 359.97438 * 9 8 4 32 32 H 1.07996 * 119.99763 * 180.02562 * 10 9 8 33 33 H 1.09002 * 109.47152 * 330.00052 * 12 11 10 34 34 H 1.09001 * 109.46980 * 210.00152 * 12 11 10 35 35 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 36 36 H 1.07998 * 120.00015 * 179.72855 * 21 11 10 37 37 H 1.08002 * 120.00360 * 180.27290 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8514 0.5684 -0.8408 6 8 3.9647 0.5799 1.2221 7 6 5.1681 -0.1814 1.1020 8 6 4.1478 2.5562 -0.1232 9 6 4.5164 3.0389 -1.3650 10 6 5.0778 4.2971 -1.4787 11 6 5.2700 5.0726 -0.3507 12 6 5.8814 6.4444 -0.4747 13 6 4.7908 7.4636 -0.6818 14 1 3.7582 7.1495 -0.7194 15 6 5.1112 8.7973 -0.8222 16 7 6.3686 9.1799 -0.7759 17 14 3.7593 10.0607 -1.0782 18 1 2.8316 10.0348 0.0811 19 1 4.3618 11.4124 -1.2005 20 1 3.0098 9.7392 -2.3193 21 6 4.9063 4.5878 0.8917 22 6 4.3410 3.3314 1.0049 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 1.6884 1.8465 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 5.0195 -0.9845 0.3802 29 1 5.9760 0.4671 0.7629 30 1 5.4266 -0.6078 2.0713 31 1 4.3658 2.4331 -2.2463 32 1 5.3653 4.6743 -2.4489 33 1 6.5625 6.4631 -1.3255 34 1 6.4314 6.6808 0.4362 35 1 6.5940 10.1181 -0.8751 36 1 5.0605 5.1920 1.7734 37 1 4.0527 2.9543 1.9751 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260009217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:54 Heat of formation + Delta-G solvation = -97.387764 kcal Electronic energy + Delta-G solvation = -17831.166400 eV Core-core repulsion = 14958.514678 eV Total energy + Delta-G solvation = -2872.651722 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.73057 -39.08392 -38.02399 -35.53272 -33.68578 -31.74303 -31.21560 -28.65895 -27.51382 -26.68845 -25.25493 -23.58291 -23.16761 -21.36397 -18.53322 -18.03528 -17.79580 -17.00461 -16.73046 -16.42115 -16.25320 -15.82540 -15.62437 -15.25875 -14.70110 -14.53368 -14.20502 -13.84480 -13.50556 -13.28075 -13.26861 -12.91058 -12.61910 -12.57781 -12.40454 -12.17142 -12.01297 -11.67970 -11.54808 -11.42824 -10.68925 -10.61833 -10.60194 -9.74297 -9.37228 -8.21724 -6.35349 0.48709 0.58679 1.39189 1.41793 1.50164 2.38391 2.66522 2.81447 3.06935 3.09214 3.90553 3.97985 4.13513 4.19160 4.24916 4.36997 4.45258 4.50088 4.58563 4.59320 4.62867 4.71472 4.72426 4.79278 4.87088 4.90266 5.11586 5.15180 5.33119 5.37811 5.58549 5.61857 5.73555 6.06610 6.09798 6.17944 6.24038 6.27424 6.77044 7.33371 8.87660 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028474 B = 0.004612 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.117875 B = 6069.794182 C = 6674.731226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.070 3.930 4 C 0.146 3.854 5 H 0.087 0.913 6 O -0.391 6.391 7 C 0.028 3.972 8 C -0.138 4.138 9 C -0.099 4.099 10 C -0.136 4.136 11 C -0.057 4.057 12 C 0.055 3.945 13 C -0.530 4.530 14 H 0.055 0.945 15 C 0.005 3.995 16 N -0.930 5.930 17 Si 0.966 3.034 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.267 1.267 21 C -0.139 4.139 22 C -0.088 4.088 23 H 0.101 0.899 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.037 0.963 30 H 0.098 0.902 31 H 0.148 0.852 32 H 0.118 0.882 33 H 0.005 0.995 34 H 0.002 0.998 35 H 0.266 0.734 36 H 0.111 0.889 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.391 -18.560 0.761 20.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C -0.007 4.007 4 C 0.088 3.912 5 H 0.105 0.895 6 O -0.310 6.310 7 C -0.068 4.068 8 C -0.139 4.139 9 C -0.116 4.116 10 C -0.154 4.154 11 C -0.057 4.057 12 C 0.018 3.982 13 C -0.568 4.568 14 H 0.073 0.927 15 C -0.193 4.193 16 N -0.570 5.570 17 Si 0.790 3.210 18 H -0.193 1.193 19 H -0.205 1.205 20 H -0.191 1.191 21 C -0.158 4.158 22 C -0.106 4.106 23 H 0.119 0.881 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.116 0.884 31 H 0.165 0.835 32 H 0.136 0.864 33 H 0.023 0.977 34 H 0.020 0.980 35 H 0.075 0.925 36 H 0.129 0.871 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.269 -18.565 0.928 20.344 hybrid contribution -0.134 1.440 -0.242 1.466 sum -8.403 -17.125 0.686 19.088 Atomic orbital electron populations 1.22938 0.79477 1.03936 1.00750 1.87838 1.21400 1.27690 1.95591 1.22610 0.91434 0.85021 1.01588 1.20759 0.92449 0.89594 0.88382 0.89504 1.87887 1.43067 1.67977 1.32026 1.22913 0.85818 0.94480 1.03554 1.20169 1.03091 0.97038 0.93582 1.21143 0.97778 0.95230 0.97498 1.21100 1.01429 0.94890 0.98015 1.20461 0.95707 0.95569 0.93952 1.18126 0.95134 0.89192 0.95780 1.21335 0.93276 0.92212 1.49990 0.92717 1.25931 0.97983 1.00712 0.94686 1.70073 1.18847 1.17270 1.50822 0.85491 0.78846 0.77499 0.79181 1.19317 1.20510 1.19136 1.21094 1.01201 0.96482 0.96978 1.20968 0.97754 0.92812 0.99099 0.88083 0.93681 0.93083 0.92829 0.90739 0.92795 0.94422 0.88350 0.83454 0.86437 0.97708 0.97995 0.92513 0.87062 0.85057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -9.46 10.67 -144.34 -1.54 -11.00 16 3 C 0.07 1.65 5.58 71.98 0.40 2.05 16 4 C 0.15 3.64 2.60 29.85 0.08 3.72 16 5 H 0.09 1.91 7.70 -2.39 -0.02 1.90 16 6 O -0.39 -10.23 9.46 -144.34 -1.37 -11.59 16 7 C 0.03 0.58 10.81 113.37 1.23 1.80 16 8 C -0.14 -4.11 4.96 -19.87 -0.10 -4.21 16 9 C -0.10 -3.00 9.68 22.27 0.22 -2.79 16 10 C -0.14 -5.23 9.70 22.27 0.22 -5.01 16 11 C -0.06 -2.54 5.07 -19.87 -0.10 -2.64 16 12 C 0.05 2.96 5.10 29.10 0.15 3.11 16 13 C -0.53 -30.50 9.09 25.60 0.23 -30.27 16 14 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 15 C 0.01 0.29 5.46 84.66 0.46 0.76 16 16 N -0.93 -56.31 13.29 21.45 0.28 -56.02 16 17 Si 0.97 44.25 29.54 68.60 2.03 46.28 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 C -0.14 -5.59 9.70 22.27 0.22 -5.37 16 22 C -0.09 -2.95 9.35 22.27 0.21 -2.74 16 23 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 24 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.05 0.94 8.08 -2.39 -0.02 0.92 16 29 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 32 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 33 H 0.00 0.27 8.09 -2.39 -0.02 0.25 16 34 H 0.00 0.10 8.08 -2.39 -0.02 0.08 16 35 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 36 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 37 H 0.13 3.98 7.63 -2.91 -0.02 3.96 16 Total: -1.00 -66.44 319.19 4.88 -61.56 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 1.02 Total: 10.72 kcal Atomic # 6 Polarization: -44.39 SS G_CDS: 4.45 Total: -39.94 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 0.28 Total: -56.02 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -2.91 Total: -22.60 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -66.44 4.88 -61.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260009217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.828 kcal (2) G-P(sol) polarization free energy of solvation -66.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds