Wall clock time and date at job start Mon Mar 30 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.47049 * 2 1 4 4 C 1.38252 * 119.93006 * 270.25498 * 3 2 1 5 5 C 1.38244 * 120.14899 * 180.29823 * 4 3 2 6 6 C 1.50698 * 119.99830 * 179.71865 * 5 4 3 7 7 C 1.50706 * 109.47294 * 264.72484 * 6 5 4 8 8 H 1.07999 * 119.99515 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00176 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99883 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00043 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47216 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47389 * 119.99848 * 11 9 7 14 14 H 1.48501 * 109.47057 * 239.99829 * 11 9 7 15 15 C 1.38561 * 119.99685 * 359.44817 * 5 4 3 16 16 O 1.36000 * 120.07346 * 180.29546 * 15 5 4 17 17 C 1.42896 * 116.99783 * 89.99701 * 16 15 5 18 18 C 1.39159 * 119.85502 * 0.27303 * 15 5 4 19 19 O 1.35994 * 120.06864 * 179.97438 * 18 15 5 20 20 C 1.42906 * 116.99575 * 180.02562 * 19 18 15 21 21 C 1.38243 * 119.92854 * 89.99559 * 3 2 1 22 22 H 1.09001 * 109.47281 * 60.00209 * 1 2 3 23 23 H 1.09000 * 109.47204 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47602 * 299.99980 * 1 2 3 25 25 H 1.08996 * 109.47170 * 240.00002 * 2 1 3 26 26 H 1.08999 * 109.46776 * 119.99673 * 2 1 3 27 27 H 1.08007 * 119.92915 * 0.03987 * 4 3 2 28 28 H 1.09001 * 109.46665 * 144.72866 * 6 5 4 29 29 H 1.09000 * 109.47722 * 24.73197 * 6 5 4 30 30 H 0.97004 * 119.99507 * 180.02562 * 10 9 7 31 31 H 1.08997 * 109.47248 * 180.02562 * 17 16 15 32 32 H 1.09003 * 109.47598 * 300.00446 * 17 16 15 33 33 H 1.09004 * 109.47226 * 60.00310 * 17 16 15 34 34 H 1.08993 * 109.46971 * 180.02562 * 20 19 18 35 35 H 1.08999 * 109.46947 * 299.99823 * 20 19 18 36 36 H 1.09004 * 109.46738 * 59.99647 * 20 19 18 37 37 H 1.08006 * 120.00066 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2572 2.0729 -1.1981 5 6 2.7238 3.3742 -1.2034 6 6 2.9738 4.0796 -2.5114 7 6 4.4273 3.9439 -2.8856 8 1 5.1024 3.4007 -2.2409 9 6 4.8953 4.5131 -4.0509 10 7 4.0732 5.1750 -4.8357 11 14 6.6968 4.3443 -4.5151 12 1 7.4052 3.5595 -3.4722 13 1 6.8082 3.6466 -5.8212 14 1 7.3093 5.6930 -4.6204 15 6 2.9563 4.0317 -0.0061 16 8 3.4096 5.3139 -0.0095 17 6 2.4254 6.3499 -0.0112 18 6 2.7244 3.3773 1.1999 19 8 2.9516 4.0182 2.3776 20 6 2.6922 3.2844 3.5761 21 6 2.2621 2.0711 1.1981 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 2.0719 1.5632 -2.1322 28 1 2.7221 5.1352 -2.4088 29 1 2.3550 3.6327 -3.2895 30 1 4.4024 5.5752 -5.6558 31 1 2.9202 7.3211 -0.0144 32 1 1.8018 6.2573 -0.9004 33 1 1.8034 6.2616 0.8795 34 1 2.9135 3.9104 4.4405 35 1 1.6434 2.9886 3.6012 36 1 3.3214 2.3946 3.6007 37 1 2.0820 1.5607 2.1328 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260013574.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:44 Heat of formation + Delta-G solvation = -67.234520 kcal Electronic energy + Delta-G solvation = -18585.128313 eV Core-core repulsion = 15713.784134 eV Total energy + Delta-G solvation = -2871.344179 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.05016 -37.71600 -36.91341 -33.82559 -32.61051 -30.63640 -28.88889 -27.31520 -26.97157 -25.89430 -23.21169 -23.18870 -21.17736 -19.67578 -17.38158 -16.62266 -16.29386 -16.25920 -15.55322 -14.56738 -14.53001 -14.33438 -14.11406 -13.81680 -13.37714 -12.86856 -12.77208 -12.38689 -12.02095 -11.77476 -11.54613 -11.34497 -11.25081 -11.16198 -10.91180 -10.69316 -10.65581 -10.39846 -10.27186 -9.62603 -9.33738 -9.12048 -8.34866 -7.80023 -7.53236 -5.97493 -3.98626 1.78078 2.00842 3.35339 3.42407 3.48893 3.57527 4.08103 4.50423 4.63598 4.96972 5.15313 5.19365 5.24966 5.37351 5.38516 5.50362 5.55767 5.68127 5.78470 5.81099 5.88425 5.97497 6.03121 6.08213 6.17404 6.26198 6.29755 6.52511 6.70720 6.93104 7.08265 7.33349 7.54819 7.63408 7.81446 7.98901 8.32072 8.42048 9.04459 9.63580 11.13172 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019209 B = 0.007222 C = 0.006023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.327052 B = 3876.027788 C = 4647.932175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 C -0.056 4.056 4 C -0.145 4.145 5 C -0.014 4.014 6 C 0.054 3.946 7 C -0.497 4.497 8 H 0.057 0.943 9 C 0.057 3.943 10 N -0.897 5.897 11 Si 0.895 3.105 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.057 3.943 16 O -0.310 6.310 17 C 0.040 3.960 18 C 0.104 3.896 19 O -0.311 6.311 20 C 0.029 3.971 21 C -0.221 4.221 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.123 0.877 28 H 0.034 0.966 29 H 0.029 0.971 30 H 0.260 0.740 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.033 0.967 34 H 0.093 0.907 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.916 -6.045 12.912 15.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.056 4.056 4 C -0.163 4.163 5 C -0.015 4.015 6 C 0.017 3.983 7 C -0.535 4.535 8 H 0.075 0.925 9 C -0.143 4.143 10 N -0.537 5.537 11 Si 0.723 3.277 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.210 1.210 15 C 0.012 3.988 16 O -0.226 6.226 17 C -0.055 4.055 18 C 0.059 3.941 19 O -0.224 6.224 20 C -0.067 4.067 21 C -0.240 4.240 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.141 0.859 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.112 0.888 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.666 -5.685 12.790 15.503 hybrid contribution 0.714 -0.256 -0.126 0.769 sum -5.952 -5.941 12.664 15.202 Atomic orbital electron populations 1.21734 0.95045 1.01170 1.02249 1.20489 0.95893 0.92991 1.02479 1.19591 0.97906 0.95502 0.92594 1.20808 1.03666 0.94660 0.97159 1.20869 0.90159 0.94048 0.96402 1.18299 0.97650 0.95602 0.86723 1.20996 0.93138 1.33731 1.05675 0.92460 1.24960 0.97775 0.95228 0.96351 1.69966 1.34693 1.35888 1.13174 0.86475 0.85168 0.77860 0.78208 1.19671 1.21066 1.20960 1.17857 1.05499 0.86428 0.89004 1.86147 1.31463 1.11112 1.93899 1.22847 0.92556 0.90485 0.99589 1.19438 0.97468 0.92019 0.85177 1.86151 1.83031 1.41070 1.12175 1.22960 1.00343 0.97468 0.85901 1.20686 1.10588 0.94361 0.98378 0.92296 0.92794 0.92887 0.90890 0.91616 0.85856 0.94764 0.95269 0.93027 0.89649 0.93633 0.94820 0.88837 0.93215 0.93035 0.86182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.89 37.16 0.37 -1.25 16 2 C -0.08 -1.04 6.06 -27.89 -0.17 -1.21 16 3 C -0.06 -0.93 5.13 -104.62 -0.54 -1.47 16 4 C -0.14 -2.85 9.33 -39.57 -0.37 -3.22 16 5 C -0.01 -0.32 5.08 -104.50 -0.53 -0.86 16 6 C 0.05 1.43 4.83 -29.03 -0.14 1.29 16 7 C -0.50 -14.43 9.09 -34.44 -0.31 -14.75 16 8 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 11 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 15 C 0.06 1.25 5.71 -39.12 -0.22 1.03 16 16 O -0.31 -7.10 9.47 -34.25 -0.32 -7.43 16 17 C 0.04 0.74 10.80 101.05 1.09 1.83 16 18 C 0.10 1.99 6.70 -39.12 -0.26 1.73 16 19 O -0.31 -5.40 10.28 -34.23 -0.35 -5.75 16 20 C 0.03 0.34 9.81 101.05 0.99 1.33 16 21 C -0.22 -3.65 8.69 -39.46 -0.34 -4.00 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 26 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 27 H 0.12 2.33 8.06 -52.48 -0.42 1.90 16 28 H 0.03 0.95 6.42 -51.93 -0.33 0.62 16 29 H 0.03 0.79 8.05 -51.93 -0.42 0.37 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.05 0.85 7.18 -51.93 -0.37 0.48 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 36 H 0.05 0.55 7.66 -51.93 -0.40 0.16 16 37 H 0.12 1.61 6.30 -52.48 -0.33 1.28 16 LS Contribution 312.88 15.07 4.71 4.71 Total: -1.00 -32.38 312.88 -6.37 -38.75 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -5.59 Total: -3.38 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -0.53 Total: -17.97 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 0.74 Total: -26.18 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.68 Total: -13.18 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.38 -6.37 -38.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260013574.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.487 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds