Wall clock time and date at job start Mon Mar 30 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.47049 * 2 1 4 4 C 1.38252 * 119.93006 * 270.25498 * 3 2 1 5 5 C 1.38244 * 120.14899 * 180.29823 * 4 3 2 6 6 C 1.50698 * 119.99830 * 179.71865 * 5 4 3 7 7 C 1.50706 * 109.47294 * 264.72484 * 6 5 4 8 8 H 1.07999 * 119.99515 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00176 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99883 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00043 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47216 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47389 * 119.99848 * 11 9 7 14 14 H 1.48501 * 109.47057 * 239.99829 * 11 9 7 15 15 C 1.38561 * 119.99685 * 359.44817 * 5 4 3 16 16 O 1.36000 * 120.07346 * 180.29546 * 15 5 4 17 17 C 1.42896 * 116.99783 * 89.99701 * 16 15 5 18 18 C 1.39159 * 119.85502 * 0.27303 * 15 5 4 19 19 O 1.35994 * 120.06864 * 179.97438 * 18 15 5 20 20 C 1.42906 * 116.99575 * 180.02562 * 19 18 15 21 21 C 1.38243 * 119.92854 * 89.99559 * 3 2 1 22 22 H 1.09001 * 109.47281 * 60.00209 * 1 2 3 23 23 H 1.09000 * 109.47204 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47602 * 299.99980 * 1 2 3 25 25 H 1.08996 * 109.47170 * 240.00002 * 2 1 3 26 26 H 1.08999 * 109.46776 * 119.99673 * 2 1 3 27 27 H 1.08007 * 119.92915 * 0.03987 * 4 3 2 28 28 H 1.09001 * 109.46665 * 144.72866 * 6 5 4 29 29 H 1.09000 * 109.47722 * 24.73197 * 6 5 4 30 30 H 0.97004 * 119.99507 * 180.02562 * 10 9 7 31 31 H 1.08997 * 109.47248 * 180.02562 * 17 16 15 32 32 H 1.09003 * 109.47598 * 300.00446 * 17 16 15 33 33 H 1.09004 * 109.47226 * 60.00310 * 17 16 15 34 34 H 1.08993 * 109.46971 * 180.02562 * 20 19 18 35 35 H 1.08999 * 109.46947 * 299.99823 * 20 19 18 36 36 H 1.09004 * 109.46738 * 59.99647 * 20 19 18 37 37 H 1.08006 * 120.00066 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2572 2.0729 -1.1981 5 6 2.7238 3.3742 -1.2034 6 6 2.9738 4.0796 -2.5114 7 6 4.4273 3.9439 -2.8856 8 1 5.1024 3.4007 -2.2409 9 6 4.8953 4.5131 -4.0509 10 7 4.0732 5.1750 -4.8357 11 14 6.6968 4.3443 -4.5151 12 1 7.4052 3.5595 -3.4722 13 1 6.8082 3.6466 -5.8212 14 1 7.3093 5.6930 -4.6204 15 6 2.9563 4.0317 -0.0061 16 8 3.4096 5.3139 -0.0095 17 6 2.4254 6.3499 -0.0112 18 6 2.7244 3.3773 1.1999 19 8 2.9516 4.0182 2.3776 20 6 2.6922 3.2844 3.5761 21 6 2.2621 2.0711 1.1981 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 2.0719 1.5632 -2.1322 28 1 2.7221 5.1352 -2.4088 29 1 2.3550 3.6327 -3.2895 30 1 4.4024 5.5752 -5.6558 31 1 2.9202 7.3211 -0.0144 32 1 1.8018 6.2573 -0.9004 33 1 1.8034 6.2616 0.8795 34 1 2.9135 3.9104 4.4405 35 1 1.6434 2.9886 3.6012 36 1 3.3214 2.3946 3.6007 37 1 2.0820 1.5607 2.1328 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260013574.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:44 Heat of formation + Delta-G solvation = -86.614867 kcal Electronic energy + Delta-G solvation = -18585.968708 eV Core-core repulsion = 15713.784134 eV Total energy + Delta-G solvation = -2872.184574 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.48401 -39.11813 -38.35342 -35.62290 -34.24742 -32.29953 -30.14557 -29.06711 -28.18340 -27.38266 -25.16693 -24.39661 -22.57753 -21.17238 -18.87617 -18.48242 -17.95508 -17.75917 -16.84876 -16.55473 -15.98882 -15.58679 -15.39121 -14.97956 -14.73839 -14.39043 -14.23034 -14.06933 -13.43319 -13.28806 -13.13463 -12.74549 -12.64170 -12.54897 -12.52174 -12.41955 -12.01071 -11.84612 -11.73289 -11.42368 -11.31083 -10.74900 -10.57722 -9.39092 -8.96756 -8.19884 -6.30382 0.31048 0.50980 1.37237 1.38627 1.52181 2.35414 2.40925 2.63811 3.10167 3.11662 3.81217 3.97266 4.18515 4.33457 4.36344 4.42755 4.45836 4.49942 4.53268 4.58444 4.60719 4.72217 4.75152 4.75811 4.93238 5.08832 5.13283 5.19776 5.28735 5.36775 5.43503 5.64250 5.73884 5.84984 5.89179 6.17805 6.33983 6.78159 6.83866 7.36123 8.90478 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019209 B = 0.007222 C = 0.006023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.327052 B = 3876.027788 C = 4647.932175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 C -0.043 4.043 4 C -0.159 4.159 5 C -0.047 4.047 6 C 0.067 3.933 7 C -0.516 4.516 8 H 0.045 0.955 9 C 0.006 3.994 10 N -0.930 5.930 11 Si 0.963 3.037 12 H -0.270 1.270 13 H -0.271 1.271 14 H -0.276 1.276 15 C 0.026 3.974 16 O -0.342 6.342 17 C 0.039 3.961 18 C 0.106 3.894 19 O -0.331 6.331 20 C 0.017 3.983 21 C -0.207 4.207 22 H 0.043 0.957 23 H 0.078 0.922 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.120 0.880 28 H 0.007 0.993 29 H 0.006 0.994 30 H 0.265 0.735 31 H 0.102 0.898 32 H 0.030 0.970 33 H 0.054 0.946 34 H 0.118 0.882 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.845 -7.979 15.213 18.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 C -0.044 4.044 4 C -0.177 4.177 5 C -0.048 4.048 6 C 0.030 3.970 7 C -0.554 4.554 8 H 0.064 0.936 9 C -0.192 4.192 10 N -0.570 5.570 11 Si 0.788 3.212 12 H -0.194 1.194 13 H -0.196 1.196 14 H -0.202 1.202 15 C -0.018 4.018 16 O -0.259 6.259 17 C -0.055 4.055 18 C 0.060 3.940 19 O -0.245 6.245 20 C -0.078 4.078 21 C -0.225 4.225 22 H 0.062 0.938 23 H 0.097 0.903 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.111 0.889 27 H 0.138 0.862 28 H 0.026 0.974 29 H 0.025 0.975 30 H 0.074 0.926 31 H 0.121 0.879 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.137 0.863 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.608 -7.626 15.107 18.167 hybrid contribution 0.623 0.331 -0.710 1.001 sum -5.985 -7.295 14.397 17.214 Atomic orbital electron populations 1.21721 0.93612 1.02726 1.01871 1.20602 0.96973 0.90148 1.03966 1.20008 0.95781 0.97254 0.91312 1.20868 1.04324 0.93811 0.98731 1.20602 0.93528 0.95564 0.95088 1.17959 0.96163 0.94317 0.88585 1.21239 0.94363 1.33892 1.05925 0.93645 1.25842 1.02504 0.94663 0.96147 1.70077 1.36803 1.36490 1.13642 0.85426 0.79417 0.78159 0.78238 1.19403 1.19624 1.20171 1.18062 1.07146 0.86391 0.90182 1.86060 1.33458 1.12226 1.94163 1.22970 0.92360 0.90374 0.99772 1.19404 0.96870 0.92631 0.85087 1.86123 1.82914 1.42532 1.12950 1.23381 1.01911 0.98310 0.84151 1.21127 1.08262 0.93208 0.99939 0.93756 0.90297 0.92266 0.90705 0.88890 0.86160 0.97449 0.97541 0.92589 0.87934 0.95176 0.92769 0.86344 0.91266 0.91730 0.81980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.89 71.98 0.71 -1.98 16 2 C -0.08 -1.76 6.06 29.85 0.18 -1.58 16 3 C -0.04 -1.36 5.13 -19.86 -0.10 -1.47 16 4 C -0.16 -6.40 9.33 22.27 0.21 -6.20 16 5 C -0.05 -2.27 5.08 -19.79 -0.10 -2.37 16 6 C 0.07 3.78 4.83 29.10 0.14 3.92 16 7 C -0.52 -31.38 9.09 25.60 0.23 -31.15 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 9 C 0.01 0.37 5.46 84.65 0.46 0.83 16 10 N -0.93 -57.64 13.29 21.45 0.28 -57.36 16 11 Si 0.96 46.51 29.54 68.60 2.03 48.54 16 12 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 13 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 15 C 0.03 1.19 5.71 22.57 0.13 1.32 16 16 O -0.34 -16.32 9.47 -79.69 -0.75 -17.07 16 17 C 0.04 1.51 10.80 113.37 1.22 2.73 16 18 C 0.11 3.92 6.70 22.57 0.15 4.07 16 19 O -0.33 -10.85 10.28 -79.62 -0.82 -11.67 16 20 C 0.02 0.32 9.81 113.37 1.11 1.43 16 21 C -0.21 -6.22 8.69 22.35 0.19 -6.02 16 22 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 25 H 0.07 1.66 8.09 -2.39 -0.02 1.64 16 26 H 0.09 1.61 8.08 -2.39 -0.02 1.59 16 27 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 28 H 0.01 0.44 6.42 -2.39 -0.02 0.43 16 29 H 0.01 0.37 8.05 -2.39 -0.02 0.35 16 30 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 31 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 32 H 0.03 1.20 7.18 -2.39 -0.02 1.19 16 33 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.09 7.66 -2.39 -0.02 1.07 16 36 H 0.06 1.10 7.66 -2.38 -0.02 1.08 16 37 H 0.16 3.46 6.30 -2.91 -0.02 3.44 16 Total: -1.00 -73.58 312.88 6.32 -67.25 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 1.04 Total: 6.76 kcal Atomic # 6 Polarization: -41.00 SS G_CDS: 4.54 Total: -36.46 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: 0.28 Total: -57.36 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -1.57 Total: -28.74 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -73.58 6.32 -67.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260013574.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.360 kcal (2) G-P(sol) polarization free energy of solvation -73.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds