Wall clock time and date at job start Mon Mar 30 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47286 * 2 1 4 4 C 1.38255 * 119.92913 * 265.00138 * 3 2 1 5 5 C 1.38242 * 120.14765 * 179.70138 * 4 3 2 6 6 C 1.38563 * 119.99761 * 0.02645 * 5 4 3 7 7 O 1.35999 * 120.07021 * 179.97438 * 6 5 4 8 8 C 1.42897 * 116.99765 * 359.97438 * 7 6 5 9 9 C 1.39155 * 119.85549 * 359.97438 * 6 5 4 10 10 O 1.35996 * 120.07039 * 180.02562 * 9 6 5 11 11 C 1.38247 * 119.92562 * 84.72579 * 3 2 1 12 12 C 1.50702 * 120.00009 * 0.25335 * 11 3 2 13 13 C 1.53002 * 109.46798 * 89.99826 * 12 11 3 14 14 C 1.50702 * 109.46798 * 179.97438 * 13 12 11 15 15 H 1.08007 * 120.00243 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00153 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99898 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00251 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47192 * 359.97438 * 18 16 14 20 20 H 1.48510 * 109.47391 * 119.99601 * 18 16 14 21 21 H 1.48498 * 109.47588 * 239.99782 * 18 16 14 22 22 H 1.08993 * 109.47118 * 59.99877 * 1 2 3 23 23 H 1.08997 * 109.47176 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46830 * 300.00247 * 1 2 3 25 25 H 1.08998 * 109.47104 * 240.00021 * 2 1 3 26 26 H 1.09006 * 109.47251 * 120.00228 * 2 1 3 27 27 H 1.08004 * 119.92416 * 359.72372 * 4 3 2 28 28 H 1.07998 * 119.99489 * 180.02562 * 5 4 3 29 29 H 1.09008 * 109.46996 * 180.02562 * 8 7 6 30 30 H 1.08996 * 109.47596 * 299.99815 * 8 7 6 31 31 H 1.09004 * 109.47087 * 60.00573 * 8 7 6 32 32 H 0.96703 * 114.00117 * 89.99724 * 10 9 6 33 33 H 1.08990 * 109.47010 * 209.99934 * 12 11 3 34 34 H 1.09000 * 109.46732 * 329.99991 * 12 11 3 35 35 H 1.08990 * 109.47429 * 299.99851 * 13 12 11 36 36 H 1.09000 * 109.47345 * 60.00540 * 13 12 11 37 37 H 0.96999 * 120.00070 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3607 2.0363 -1.1936 5 6 2.8162 3.3416 -1.1994 6 6 2.9449 4.0357 -0.0071 7 8 3.3933 5.3196 -0.0111 8 6 3.7140 5.8908 -1.2810 9 6 2.6144 3.4161 1.1943 10 8 2.7386 4.0935 2.3670 11 6 2.1584 2.1077 1.1931 12 6 1.7991 1.4338 2.4922 13 6 3.0339 0.7320 3.0612 14 6 2.6747 0.0586 4.3607 15 1 1.6666 0.1249 4.7427 16 6 3.6331 -0.6413 5.0624 17 7 4.8607 -0.7217 4.5975 18 14 3.1881 -1.4755 6.6735 19 1 1.7538 -1.2363 6.9751 20 1 3.4335 -2.9357 6.5593 21 1 4.0231 -0.9173 7.7672 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.2609 1.4963 -2.1236 28 1 3.0716 3.8201 -2.1333 29 1 4.0588 6.9155 -1.1419 30 1 4.5011 5.3043 -1.7549 31 1 2.8273 5.8883 -1.9149 32 1 1.9437 4.5790 2.6269 33 1 1.4456 2.1804 3.2032 34 1 1.0131 0.6996 2.3153 35 1 3.3873 -0.0147 2.3503 36 1 3.8199 1.4661 3.2381 37 1 5.5349 -1.2144 5.0910 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260028353.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:37 Heat of formation + Delta-G solvation = -79.168657 kcal Electronic energy + Delta-G solvation = -18436.125557 eV Core-core repulsion = 15564.263875 eV Total energy + Delta-G solvation = -2871.861682 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.26593 -38.03066 -36.54990 -33.93929 -32.87091 -31.54159 -29.04926 -28.39820 -26.99895 -24.97118 -23.31332 -22.07142 -20.77355 -19.88326 -17.90548 -17.04541 -16.57299 -16.20613 -15.68919 -14.86995 -14.43441 -14.39416 -13.98269 -13.45268 -13.27351 -13.05581 -12.53307 -12.37273 -12.16647 -11.83603 -11.72913 -11.29851 -11.10484 -10.98064 -10.83426 -10.68479 -10.48884 -10.45591 -10.03059 -9.71564 -9.54773 -8.99664 -8.28535 -8.09055 -7.69212 -5.93388 -3.96054 1.58509 1.68844 3.34839 3.39104 3.42215 3.45996 3.93021 4.50889 4.57928 4.94480 5.10793 5.13723 5.17050 5.37277 5.42026 5.42760 5.50171 5.62019 5.74836 5.82128 5.92448 6.07035 6.22024 6.26966 6.43968 6.49009 6.57444 6.66195 6.75379 6.99744 7.06948 7.18680 7.47097 7.76275 7.92210 8.08459 8.18360 8.47017 9.11131 9.67312 11.17794 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023622 B = 0.006042 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.048305 B = 4633.233790 C = 5363.549329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.102 4.102 4 C -0.089 4.089 5 C -0.211 4.211 6 C 0.093 3.907 7 O -0.311 6.311 8 C 0.028 3.972 9 C 0.076 3.924 10 O -0.475 6.475 11 C -0.043 4.043 12 C -0.076 4.076 13 C 0.034 3.966 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 H 0.048 0.952 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.377 0.623 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.016 0.984 36 H 0.021 0.979 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.802 8.516 -13.301 17.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 C -0.102 4.102 4 C -0.107 4.107 5 C -0.229 4.229 6 C 0.048 3.952 7 O -0.225 6.225 8 C -0.067 4.067 9 C 0.030 3.970 10 O -0.283 6.283 11 C -0.044 4.044 12 C -0.113 4.113 13 C -0.003 4.003 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.718 3.282 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.211 1.211 22 H 0.067 0.933 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.108 0.892 27 H 0.139 0.861 28 H 0.142 0.858 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.231 0.769 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.034 0.966 36 H 0.040 0.960 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.026 8.344 -13.097 16.657 hybrid contribution -0.405 -0.188 0.516 0.683 sum -6.432 8.155 -12.581 16.314 Atomic orbital electron populations 1.21741 0.95286 1.01391 1.01686 1.20546 0.95702 0.92569 1.03564 1.19593 1.01992 0.96729 0.91872 1.20749 0.98543 0.93915 0.97540 1.20930 1.09063 0.96672 0.96270 1.19427 0.97935 0.84046 0.93816 1.86135 1.80201 1.24845 1.31271 1.22995 0.99964 0.98819 0.84945 1.17576 1.05000 0.91154 0.83272 1.84991 1.40082 1.66796 1.36388 1.20392 0.94966 0.92159 0.96864 1.20797 1.01364 0.98527 0.90604 1.19029 0.91341 0.94915 0.95052 1.21265 0.96137 1.32052 1.06170 0.92636 1.25011 0.95004 0.96582 0.97789 1.69991 1.02190 1.42175 1.38948 0.86565 0.78505 0.79180 0.83908 1.19745 1.21084 1.21058 0.93303 0.92631 0.92294 0.91702 0.89223 0.86138 0.85792 0.88623 0.92891 0.93065 0.76909 0.92102 0.91611 0.96552 0.96036 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.70 37.16 0.36 -1.54 16 2 C -0.09 -1.34 5.36 -27.88 -0.15 -1.49 16 3 C -0.10 -1.72 5.13 -104.61 -0.54 -2.26 16 4 C -0.09 -1.32 9.67 -39.57 -0.38 -1.70 16 5 C -0.21 -3.06 9.04 -39.46 -0.36 -3.42 16 6 C 0.09 1.57 6.70 -39.12 -0.26 1.30 16 7 O -0.31 -4.83 10.28 -34.24 -0.35 -5.18 16 8 C 0.03 0.29 9.81 101.05 0.99 1.28 16 9 C 0.08 1.43 6.69 -39.12 -0.26 1.17 16 10 O -0.47 -8.95 12.33 -34.23 -0.42 -9.38 16 11 C -0.04 -0.83 5.14 -104.50 -0.54 -1.37 16 12 C -0.08 -1.61 4.38 -27.88 -0.12 -1.73 16 13 C 0.03 0.90 4.83 -27.88 -0.13 0.76 16 14 C -0.52 -14.85 9.11 -34.44 -0.31 -15.17 16 15 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.55 13.29 55.43 0.74 -26.82 16 18 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.82 6.90 -51.93 -0.36 0.47 16 25 H 0.06 0.88 8.05 -51.93 -0.42 0.46 16 26 H 0.09 1.63 6.08 -51.93 -0.32 1.32 16 27 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 28 H 0.12 1.42 6.30 -52.49 -0.33 1.09 16 29 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 30 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 31 H 0.05 0.44 7.66 -51.93 -0.40 0.05 16 32 H 0.38 5.16 9.06 45.56 0.41 5.57 16 33 H 0.06 1.27 7.53 -51.93 -0.39 0.88 16 34 H 0.07 1.31 5.40 -51.93 -0.28 1.03 16 35 H 0.02 0.46 7.32 -51.93 -0.38 0.08 16 36 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 306.43 15.07 4.62 4.62 Total: -1.00 -33.58 306.43 -6.76 -40.33 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -4.51 Total: 2.09 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -1.80 Total: -22.60 kcal Atomic # 7 Polarization: -27.55 SS G_CDS: 0.74 Total: -26.82 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.77 Total: -14.56 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.58 -6.76 -40.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260028353.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.835 kcal (2) G-P(sol) polarization free energy of solvation -33.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds