Wall clock time and date at job start Mon Mar 30 2020 05:48:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.50698 * 109.47286 * 2 1
4 4 C 1.38255 * 119.92913 * 265.00138 * 3 2 1
5 5 C 1.38242 * 120.14765 * 179.70138 * 4 3 2
6 6 C 1.38563 * 119.99761 * 0.02645 * 5 4 3
7 7 O 1.35999 * 120.07021 * 179.97438 * 6 5 4
8 8 C 1.42897 * 116.99765 * 359.97438 * 7 6 5
9 9 C 1.39155 * 119.85549 * 359.97438 * 6 5 4
10 10 O 1.35996 * 120.07039 * 180.02562 * 9 6 5
11 11 C 1.38247 * 119.92562 * 84.72579 * 3 2 1
12 12 C 1.50702 * 120.00009 * 0.25335 * 11 3 2
13 13 C 1.53002 * 109.46798 * 89.99826 * 12 11 3
14 14 C 1.50702 * 109.46798 * 179.97438 * 13 12 11
15 15 H 1.08007 * 120.00243 * 359.97438 * 14 13 12
16 16 C 1.37873 * 120.00153 * 180.02562 * 14 13 12
17 17 N 1.31516 * 119.99898 * 359.97438 * 16 14 13
18 18 Si 1.86797 * 120.00251 * 179.97438 * 16 14 13
19 19 H 1.48498 * 109.47192 * 359.97438 * 18 16 14
20 20 H 1.48510 * 109.47391 * 119.99601 * 18 16 14
21 21 H 1.48498 * 109.47588 * 239.99782 * 18 16 14
22 22 H 1.08993 * 109.47118 * 59.99877 * 1 2 3
23 23 H 1.08997 * 109.47176 * 180.02562 * 1 2 3
24 24 H 1.09005 * 109.46830 * 300.00247 * 1 2 3
25 25 H 1.08998 * 109.47104 * 240.00021 * 2 1 3
26 26 H 1.09006 * 109.47251 * 120.00228 * 2 1 3
27 27 H 1.08004 * 119.92416 * 359.72372 * 4 3 2
28 28 H 1.07998 * 119.99489 * 180.02562 * 5 4 3
29 29 H 1.09008 * 109.46996 * 180.02562 * 8 7 6
30 30 H 1.08996 * 109.47596 * 299.99815 * 8 7 6
31 31 H 1.09004 * 109.47087 * 60.00573 * 8 7 6
32 32 H 0.96703 * 114.00117 * 89.99724 * 10 9 6
33 33 H 1.08990 * 109.47010 * 209.99934 * 12 11 3
34 34 H 1.09000 * 109.46732 * 329.99991 * 12 11 3
35 35 H 1.08990 * 109.47429 * 299.99851 * 13 12 11
36 36 H 1.09000 * 109.47345 * 60.00540 * 13 12 11
37 37 H 0.96999 * 120.00070 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 6 2.3607 2.0363 -1.1936
5 6 2.8162 3.3416 -1.1994
6 6 2.9449 4.0357 -0.0071
7 8 3.3933 5.3196 -0.0111
8 6 3.7140 5.8908 -1.2810
9 6 2.6144 3.4161 1.1943
10 8 2.7386 4.0935 2.3670
11 6 2.1584 2.1077 1.1931
12 6 1.7991 1.4338 2.4922
13 6 3.0339 0.7320 3.0612
14 6 2.6747 0.0586 4.3607
15 1 1.6666 0.1249 4.7427
16 6 3.6331 -0.6413 5.0624
17 7 4.8607 -0.7217 4.5975
18 14 3.1881 -1.4755 6.6735
19 1 1.7538 -1.2363 6.9751
20 1 3.4335 -2.9357 6.5593
21 1 4.0231 -0.9173 7.7672
22 1 -0.3633 0.5138 -0.8899
23 1 -0.3633 -1.0276 0.0005
24 1 -0.3633 0.5139 0.8900
25 1 1.8933 -0.5138 -0.8900
26 1 1.8934 -0.5139 0.8900
27 1 2.2609 1.4963 -2.1236
28 1 3.0716 3.8201 -2.1333
29 1 4.0588 6.9155 -1.1419
30 1 4.5011 5.3043 -1.7549
31 1 2.8273 5.8883 -1.9149
32 1 1.9437 4.5790 2.6269
33 1 1.4456 2.1804 3.2032
34 1 1.0131 0.6996 2.3153
35 1 3.3873 -0.0147 2.3503
36 1 3.8199 1.4661 3.2381
37 1 5.5349 -1.2144 5.0910
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260028353.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:48:37
Heat of formation + Delta-G solvation = -101.249019 kcal
Electronic energy + Delta-G solvation = -18437.083033 eV
Core-core repulsion = 15564.263875 eV
Total energy + Delta-G solvation = -2872.819158 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 250.136 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-41.51360 -39.23144 -37.90572 -35.80294 -34.33172 -33.29058 -30.45042 -29.79060
-28.02237 -26.81813 -24.51812 -23.76404 -22.26716 -21.27638 -19.22860 -18.54201
-18.21138 -17.79739 -16.81642 -16.50030 -16.03196 -15.61142 -15.26604 -14.74085
-14.61296 -14.39003 -14.27569 -13.99118 -13.49604 -13.38149 -12.87923 -12.83390
-12.72780 -12.45091 -12.36338 -12.09505 -11.88646 -11.81170 -11.59041 -11.42571
-11.41067 -11.00818 -10.55338 -9.49587 -8.92142 -8.18426 -6.30734 0.30611
0.41781 1.39652 1.40937 1.54255 2.34311 2.41941 2.68326 3.14300
3.32375 3.88298 3.91136 4.16214 4.24693 4.34906 4.40977 4.43714
4.50517 4.60161 4.67904 4.72425 4.79883 4.92288 4.93028 5.08828
5.15582 5.25543 5.30946 5.36064 5.43269 5.52825 5.65940 5.81548
5.85264 5.88853 6.23521 6.37427 6.86096 6.94558 7.38452 8.93834
Molecular weight = 250.14amu
Principal moments of inertia in cm(-1)
A = 0.023622 B = 0.006042 C = 0.005219
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1185.048305 B = 4633.233790 C = 5363.549329
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.086 4.086
3 C -0.111 4.111
4 C -0.083 4.083
5 C -0.197 4.197
6 C 0.085 3.915
7 O -0.334 6.334
8 C 0.017 3.983
9 C 0.049 3.951
10 O -0.499 6.499
11 C -0.074 4.074
12 C -0.058 4.058
13 C 0.046 3.954
14 C -0.539 4.539
15 H 0.063 0.937
16 C -0.002 4.002
17 N -0.936 5.936
18 Si 0.968 3.032
19 H -0.259 1.259
20 H -0.276 1.276
21 H -0.280 1.280
22 H 0.069 0.931
23 H 0.068 0.932
24 H 0.044 0.956
25 H 0.087 0.913
26 H 0.051 0.949
27 H 0.159 0.841
28 H 0.163 0.837
29 H 0.117 0.883
30 H 0.061 0.939
31 H 0.072 0.928
32 H 0.393 0.607
33 H 0.056 0.944
34 H 0.075 0.925
35 H -0.009 1.009
36 H -0.024 1.024
37 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.929 8.655 -15.012 19.056
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.123 4.123
3 C -0.112 4.112
4 C -0.101 4.101
5 C -0.216 4.216
6 C 0.039 3.961
7 O -0.248 6.248
8 C -0.077 4.077
9 C 0.004 3.996
10 O -0.310 6.310
11 C -0.075 4.075
12 C -0.096 4.096
13 C 0.009 3.991
14 C -0.577 4.577
15 H 0.081 0.919
16 C -0.199 4.199
17 N -0.576 5.576
18 Si 0.792 3.208
19 H -0.182 1.182
20 H -0.201 1.201
21 H -0.206 1.206
22 H 0.088 0.912
23 H 0.087 0.913
24 H 0.063 0.937
25 H 0.106 0.894
26 H 0.070 0.930
27 H 0.176 0.824
28 H 0.180 0.820
29 H 0.135 0.865
30 H 0.080 0.920
31 H 0.090 0.910
32 H 0.249 0.751
33 H 0.075 0.925
34 H 0.093 0.907
35 H 0.009 0.991
36 H -0.005 1.005
37 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -7.176 8.502 -14.819 18.531
hybrid contribution -0.002 -0.131 0.943 0.952
sum -7.178 8.371 -13.877 17.725
Atomic orbital electron populations
1.21703 0.93442 1.02364 1.02015 1.20545 0.97316 0.91678 1.02776
1.19845 1.02042 0.97272 0.92013 1.21151 0.96903 0.94107 0.97959
1.21372 1.06934 0.96414 0.96852 1.19499 0.97875 0.84974 0.93731
1.86105 1.80039 1.24194 1.34446 1.23370 1.01246 0.99740 0.83369
1.17866 1.06168 0.91496 0.84056 1.84918 1.41635 1.67227 1.37195
1.20263 0.97730 0.92915 0.96586 1.20442 0.98857 0.98262 0.91990
1.18785 0.92483 0.93322 0.94475 1.21698 0.96627 1.32273 1.07052
0.91865 1.26024 0.94727 0.97208 1.01960 1.70142 1.03503 1.43131
1.40851 0.85361 0.78864 0.78043 0.78540 1.18235 1.20120 1.20611
0.91184 0.91343 0.93687 0.89416 0.93017 0.82364 0.81994 0.86507
0.92008 0.90969 0.75053 0.92521 0.90684 0.99083 1.00531 0.92843
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.44 9.70 71.98 0.70 -2.75 16
2 C -0.09 -2.61 5.36 29.85 0.16 -2.45 16
3 C -0.11 -3.70 5.13 -19.86 -0.10 -3.81 16
4 C -0.08 -2.22 9.67 22.27 0.22 -2.00 16
5 C -0.20 -5.15 9.04 22.35 0.20 -4.95 16
6 C 0.08 2.78 6.70 22.57 0.15 2.93 16
7 O -0.33 -9.96 10.28 -79.68 -0.82 -10.78 16
8 C 0.02 0.30 9.81 113.37 1.11 1.41 16
9 C 0.05 1.91 6.69 22.57 0.15 2.06 16
10 O -0.50 -19.83 12.33 -79.63 -0.98 -20.82 16
11 C -0.07 -2.94 5.14 -19.79 -0.10 -3.05 16
12 C -0.06 -2.61 4.38 29.85 0.13 -2.48 16
13 C 0.05 2.64 4.83 29.85 0.14 2.78 16
14 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16
15 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16
16 C 0.00 -0.11 5.46 84.65 0.46 0.35 16
17 N -0.94 -59.64 13.29 21.45 0.28 -59.35 16
18 Si 0.97 45.60 29.54 68.60 2.03 47.63 16
19 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16
20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16
21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16
22 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16
23 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16
24 H 0.04 1.23 6.90 -2.38 -0.02 1.21 16
25 H 0.09 2.21 8.05 -2.39 -0.02 2.19 16
26 H 0.05 1.96 6.08 -2.38 -0.01 1.94 16
27 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16
28 H 0.16 2.93 6.30 -2.91 -0.02 2.91 16
29 H 0.12 1.54 8.14 -2.38 -0.02 1.52 16
30 H 0.06 0.98 7.66 -2.39 -0.02 0.97 16
31 H 0.07 0.97 7.66 -2.39 -0.02 0.96 16
32 H 0.39 11.48 9.06 -74.06 -0.67 10.81 16
33 H 0.06 2.50 7.53 -2.39 -0.02 2.48 16
34 H 0.07 3.13 5.40 -2.39 -0.01 3.12 16
35 H -0.01 -0.56 7.32 -2.39 -0.02 -0.58 16
36 H -0.02 -1.54 8.14 -2.39 -0.02 -1.56 16
37 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16
Total: -1.00 -75.97 306.43 4.37 -71.60
By element:
Atomic # 1 Polarization: 15.00 SS G_CDS: 0.40 Total: 15.40 kcal
Atomic # 6 Polarization: -47.14 SS G_CDS: 3.46 Total: -43.68 kcal
Atomic # 7 Polarization: -59.64 SS G_CDS: 0.28 Total: -59.35 kcal
Atomic # 8 Polarization: -29.79 SS G_CDS: -1.80 Total: -31.59 kcal
Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal
Total: -75.97 4.37 -71.60 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260028353.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.650 kcal
(2) G-P(sol) polarization free energy of solvation -75.967 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.618 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.369 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.599 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.249 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds