Wall clock time and date at job start Mon Mar 30 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47286 * 2 1 4 4 C 1.38255 * 119.92913 * 265.00138 * 3 2 1 5 5 C 1.38242 * 120.14765 * 179.70138 * 4 3 2 6 6 C 1.38563 * 119.99761 * 0.02645 * 5 4 3 7 7 O 1.35999 * 120.07021 * 179.97438 * 6 5 4 8 8 C 1.42897 * 116.99765 * 359.97438 * 7 6 5 9 9 C 1.39155 * 119.85549 * 359.97438 * 6 5 4 10 10 O 1.35996 * 120.07039 * 180.02562 * 9 6 5 11 11 C 1.38247 * 119.92562 * 84.72579 * 3 2 1 12 12 C 1.50702 * 120.00009 * 0.25335 * 11 3 2 13 13 C 1.53002 * 109.46798 * 89.99826 * 12 11 3 14 14 C 1.50702 * 109.46798 * 179.97438 * 13 12 11 15 15 H 1.08007 * 120.00243 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00153 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99898 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00251 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47192 * 359.97438 * 18 16 14 20 20 H 1.48510 * 109.47391 * 119.99601 * 18 16 14 21 21 H 1.48498 * 109.47588 * 239.99782 * 18 16 14 22 22 H 1.08993 * 109.47118 * 59.99877 * 1 2 3 23 23 H 1.08997 * 109.47176 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46830 * 300.00247 * 1 2 3 25 25 H 1.08998 * 109.47104 * 240.00021 * 2 1 3 26 26 H 1.09006 * 109.47251 * 120.00228 * 2 1 3 27 27 H 1.08004 * 119.92416 * 359.72372 * 4 3 2 28 28 H 1.07998 * 119.99489 * 180.02562 * 5 4 3 29 29 H 1.09008 * 109.46996 * 180.02562 * 8 7 6 30 30 H 1.08996 * 109.47596 * 299.99815 * 8 7 6 31 31 H 1.09004 * 109.47087 * 60.00573 * 8 7 6 32 32 H 0.96703 * 114.00117 * 89.99724 * 10 9 6 33 33 H 1.08990 * 109.47010 * 209.99934 * 12 11 3 34 34 H 1.09000 * 109.46732 * 329.99991 * 12 11 3 35 35 H 1.08990 * 109.47429 * 299.99851 * 13 12 11 36 36 H 1.09000 * 109.47345 * 60.00540 * 13 12 11 37 37 H 0.96999 * 120.00070 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3607 2.0363 -1.1936 5 6 2.8162 3.3416 -1.1994 6 6 2.9449 4.0357 -0.0071 7 8 3.3933 5.3196 -0.0111 8 6 3.7140 5.8908 -1.2810 9 6 2.6144 3.4161 1.1943 10 8 2.7386 4.0935 2.3670 11 6 2.1584 2.1077 1.1931 12 6 1.7991 1.4338 2.4922 13 6 3.0339 0.7320 3.0612 14 6 2.6747 0.0586 4.3607 15 1 1.6666 0.1249 4.7427 16 6 3.6331 -0.6413 5.0624 17 7 4.8607 -0.7217 4.5975 18 14 3.1881 -1.4755 6.6735 19 1 1.7538 -1.2363 6.9751 20 1 3.4335 -2.9357 6.5593 21 1 4.0231 -0.9173 7.7672 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.2609 1.4963 -2.1236 28 1 3.0716 3.8201 -2.1333 29 1 4.0588 6.9155 -1.1419 30 1 4.5011 5.3043 -1.7549 31 1 2.8273 5.8883 -1.9149 32 1 1.9437 4.5790 2.6269 33 1 1.4456 2.1804 3.2032 34 1 1.0131 0.6996 2.3153 35 1 3.3873 -0.0147 2.3503 36 1 3.8199 1.4661 3.2381 37 1 5.5349 -1.2144 5.0910 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260028353.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:37 Heat of formation + Delta-G solvation = -101.249019 kcal Electronic energy + Delta-G solvation = -18437.083033 eV Core-core repulsion = 15564.263875 eV Total energy + Delta-G solvation = -2872.819158 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.51360 -39.23144 -37.90572 -35.80294 -34.33172 -33.29058 -30.45042 -29.79060 -28.02237 -26.81813 -24.51812 -23.76404 -22.26716 -21.27638 -19.22860 -18.54201 -18.21138 -17.79739 -16.81642 -16.50030 -16.03196 -15.61142 -15.26604 -14.74085 -14.61296 -14.39003 -14.27569 -13.99118 -13.49604 -13.38149 -12.87923 -12.83390 -12.72780 -12.45091 -12.36338 -12.09505 -11.88646 -11.81170 -11.59041 -11.42571 -11.41067 -11.00818 -10.55338 -9.49587 -8.92142 -8.18426 -6.30734 0.30611 0.41781 1.39652 1.40937 1.54255 2.34311 2.41941 2.68326 3.14300 3.32375 3.88298 3.91136 4.16214 4.24693 4.34906 4.40977 4.43714 4.50517 4.60161 4.67904 4.72425 4.79883 4.92288 4.93028 5.08828 5.15582 5.25543 5.30946 5.36064 5.43269 5.52825 5.65940 5.81548 5.85264 5.88853 6.23521 6.37427 6.86096 6.94558 7.38452 8.93834 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023622 B = 0.006042 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.048305 B = 4633.233790 C = 5363.549329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.086 4.086 3 C -0.111 4.111 4 C -0.083 4.083 5 C -0.197 4.197 6 C 0.085 3.915 7 O -0.334 6.334 8 C 0.017 3.983 9 C 0.049 3.951 10 O -0.499 6.499 11 C -0.074 4.074 12 C -0.058 4.058 13 C 0.046 3.954 14 C -0.539 4.539 15 H 0.063 0.937 16 C -0.002 4.002 17 N -0.936 5.936 18 Si 0.968 3.032 19 H -0.259 1.259 20 H -0.276 1.276 21 H -0.280 1.280 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.044 0.956 25 H 0.087 0.913 26 H 0.051 0.949 27 H 0.159 0.841 28 H 0.163 0.837 29 H 0.117 0.883 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.393 0.607 33 H 0.056 0.944 34 H 0.075 0.925 35 H -0.009 1.009 36 H -0.024 1.024 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.929 8.655 -15.012 19.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.123 4.123 3 C -0.112 4.112 4 C -0.101 4.101 5 C -0.216 4.216 6 C 0.039 3.961 7 O -0.248 6.248 8 C -0.077 4.077 9 C 0.004 3.996 10 O -0.310 6.310 11 C -0.075 4.075 12 C -0.096 4.096 13 C 0.009 3.991 14 C -0.577 4.577 15 H 0.081 0.919 16 C -0.199 4.199 17 N -0.576 5.576 18 Si 0.792 3.208 19 H -0.182 1.182 20 H -0.201 1.201 21 H -0.206 1.206 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.063 0.937 25 H 0.106 0.894 26 H 0.070 0.930 27 H 0.176 0.824 28 H 0.180 0.820 29 H 0.135 0.865 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.249 0.751 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.009 0.991 36 H -0.005 1.005 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.176 8.502 -14.819 18.531 hybrid contribution -0.002 -0.131 0.943 0.952 sum -7.178 8.371 -13.877 17.725 Atomic orbital electron populations 1.21703 0.93442 1.02364 1.02015 1.20545 0.97316 0.91678 1.02776 1.19845 1.02042 0.97272 0.92013 1.21151 0.96903 0.94107 0.97959 1.21372 1.06934 0.96414 0.96852 1.19499 0.97875 0.84974 0.93731 1.86105 1.80039 1.24194 1.34446 1.23370 1.01246 0.99740 0.83369 1.17866 1.06168 0.91496 0.84056 1.84918 1.41635 1.67227 1.37195 1.20263 0.97730 0.92915 0.96586 1.20442 0.98857 0.98262 0.91990 1.18785 0.92483 0.93322 0.94475 1.21698 0.96627 1.32273 1.07052 0.91865 1.26024 0.94727 0.97208 1.01960 1.70142 1.03503 1.43131 1.40851 0.85361 0.78864 0.78043 0.78540 1.18235 1.20120 1.20611 0.91184 0.91343 0.93687 0.89416 0.93017 0.82364 0.81994 0.86507 0.92008 0.90969 0.75053 0.92521 0.90684 0.99083 1.00531 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.70 71.98 0.70 -2.75 16 2 C -0.09 -2.61 5.36 29.85 0.16 -2.45 16 3 C -0.11 -3.70 5.13 -19.86 -0.10 -3.81 16 4 C -0.08 -2.22 9.67 22.27 0.22 -2.00 16 5 C -0.20 -5.15 9.04 22.35 0.20 -4.95 16 6 C 0.08 2.78 6.70 22.57 0.15 2.93 16 7 O -0.33 -9.96 10.28 -79.68 -0.82 -10.78 16 8 C 0.02 0.30 9.81 113.37 1.11 1.41 16 9 C 0.05 1.91 6.69 22.57 0.15 2.06 16 10 O -0.50 -19.83 12.33 -79.63 -0.98 -20.82 16 11 C -0.07 -2.94 5.14 -19.79 -0.10 -3.05 16 12 C -0.06 -2.61 4.38 29.85 0.13 -2.48 16 13 C 0.05 2.64 4.83 29.85 0.14 2.78 16 14 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 15 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 16 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 17 N -0.94 -59.64 13.29 21.45 0.28 -59.35 16 18 Si 0.97 45.60 29.54 68.60 2.03 47.63 16 19 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.04 1.23 6.90 -2.38 -0.02 1.21 16 25 H 0.09 2.21 8.05 -2.39 -0.02 2.19 16 26 H 0.05 1.96 6.08 -2.38 -0.01 1.94 16 27 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 28 H 0.16 2.93 6.30 -2.91 -0.02 2.91 16 29 H 0.12 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.06 0.98 7.66 -2.39 -0.02 0.97 16 31 H 0.07 0.97 7.66 -2.39 -0.02 0.96 16 32 H 0.39 11.48 9.06 -74.06 -0.67 10.81 16 33 H 0.06 2.50 7.53 -2.39 -0.02 2.48 16 34 H 0.07 3.13 5.40 -2.39 -0.01 3.12 16 35 H -0.01 -0.56 7.32 -2.39 -0.02 -0.58 16 36 H -0.02 -1.54 8.14 -2.39 -0.02 -1.56 16 37 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -75.97 306.43 4.37 -71.60 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.40 Total: 15.40 kcal Atomic # 6 Polarization: -47.14 SS G_CDS: 3.46 Total: -43.68 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: 0.28 Total: -59.35 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -1.80 Total: -31.59 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -75.97 4.37 -71.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260028353.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.650 kcal (2) G-P(sol) polarization free energy of solvation -75.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds