Wall clock time and date at job start Mon Mar 30 2020 05:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35993 * 117.00368 * 2 1 4 4 C 1.38569 * 120.06983 * 359.97438 * 3 2 1 5 5 C 1.38246 * 119.99398 * 180.02562 * 4 3 2 6 6 C 1.38252 * 120.15246 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.92865 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.46968 * 294.51123 * 7 6 5 9 9 C 1.52999 * 109.47269 * 54.50612 * 7 6 5 10 10 C 1.38236 * 120.14195 * 0.02562 * 6 5 4 11 11 C 1.50701 * 119.99981 * 179.97438 * 10 6 5 12 12 C 1.50697 * 109.47051 * 84.66249 * 11 10 6 13 13 H 1.08010 * 120.00071 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00196 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00151 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00049 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47180 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47268 * 120.00073 * 16 14 12 19 19 H 1.48502 * 109.46882 * 239.99544 * 16 14 12 20 20 C 1.38569 * 120.00465 * 359.71967 * 10 6 5 21 21 O 1.35995 * 120.07652 * 180.27330 * 20 10 6 22 22 H 1.09000 * 109.47022 * 300.00305 * 1 2 3 23 23 H 1.08993 * 109.47812 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46832 * 59.99902 * 1 2 3 25 25 H 1.07993 * 120.00075 * 0.02562 * 4 3 2 26 26 H 1.08001 * 119.91958 * 180.02562 * 5 4 3 27 27 H 1.08994 * 109.47134 * 174.51128 * 7 6 5 28 28 H 1.08994 * 109.47189 * 60.00038 * 8 7 6 29 29 H 1.09003 * 109.46905 * 180.02562 * 8 7 6 30 30 H 1.09001 * 109.46972 * 299.99836 * 8 7 6 31 31 H 1.08994 * 109.47168 * 179.97438 * 9 7 6 32 32 H 1.08994 * 109.47463 * 300.00314 * 9 7 6 33 33 H 1.09005 * 109.46481 * 60.00195 * 9 7 6 34 34 H 1.09007 * 109.47374 * 204.65898 * 11 10 6 35 35 H 1.08999 * 109.47168 * 324.66712 * 11 10 6 36 36 H 0.96997 * 119.99966 * 180.02562 * 15 14 12 37 37 H 0.96695 * 113.99869 * 270.27440 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3748 -0.0005 5 6 1.9226 3.6057 -0.0011 6 6 3.3031 3.6798 -0.0005 7 6 3.9839 5.0242 -0.0005 8 6 3.6809 5.7493 -1.3133 9 6 3.4666 5.8578 1.1735 10 6 4.0603 2.5233 0.0000 11 6 5.5650 2.6078 0.0000 12 6 6.0591 2.7686 1.4146 13 1 5.3540 2.8054 2.2320 14 6 7.4111 2.8686 1.6654 15 7 8.2697 2.8233 0.6702 16 14 8.0236 3.0672 3.4190 17 1 6.8656 3.0890 4.3483 18 1 8.9143 1.9302 3.7640 19 1 8.7778 4.3408 3.5386 20 6 3.4360 1.2862 0.0059 21 8 4.1795 0.1476 0.0120 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 -0.8901 25 1 0.2147 2.3197 -0.0005 26 1 1.3344 4.5114 -0.0011 27 1 5.0605 4.8863 0.0982 28 1 2.6042 5.8872 -1.4121 29 1 4.1737 6.7216 -1.3135 30 1 4.0494 5.1554 -2.1498 31 1 3.9593 6.8301 1.1738 32 1 2.3900 5.9958 1.0748 33 1 3.6825 5.3412 2.1088 34 1 5.9802 1.6955 -0.4284 35 1 5.8807 3.4650 -0.5947 36 1 9.2209 2.8933 0.8467 37 1 4.3986 -0.1839 -0.8695 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260031586.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:23 Heat of formation + Delta-G solvation = -75.300006 kcal Electronic energy + Delta-G solvation = -18798.834523 eV Core-core repulsion = 15927.140599 eV Total energy + Delta-G solvation = -2871.693924 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.02718 -37.88106 -36.50290 -33.79832 -33.19905 -30.83413 -28.77362 -27.03561 -26.67019 -26.50587 -23.25470 -22.68079 -20.48053 -19.45050 -17.62859 -16.77147 -16.29955 -16.07542 -15.46894 -14.79631 -14.51743 -14.16415 -13.88224 -13.33437 -13.05563 -12.85799 -12.39884 -12.23247 -11.93632 -11.75890 -11.62396 -11.38243 -11.06096 -10.87522 -10.74662 -10.71179 -10.38210 -10.25854 -9.95814 -9.88943 -9.42871 -9.24776 -8.36682 -7.81352 -7.44598 -5.99616 -4.01081 1.87226 1.99050 3.33159 3.40840 3.46425 3.58473 4.21354 4.51024 4.85603 5.11394 5.24649 5.30277 5.35974 5.36949 5.50300 5.58608 5.65725 5.77597 5.95998 6.04417 6.07670 6.22011 6.24740 6.34154 6.47457 6.54761 6.74794 6.80395 6.89234 6.92269 7.19524 7.39705 7.56958 7.70464 7.82934 7.96855 8.34411 8.48181 9.02336 9.61431 11.10673 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018629 B = 0.008150 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.643300 B = 3434.925720 C = 4314.551682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.089 3.911 4 C -0.220 4.220 5 C -0.090 4.090 6 C -0.096 4.096 7 C -0.062 4.062 8 C -0.138 4.138 9 C -0.136 4.136 10 C -0.023 4.023 11 C 0.054 3.946 12 C -0.497 4.497 13 H 0.056 0.944 14 C 0.059 3.941 15 N -0.895 5.895 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.070 3.930 21 O -0.474 6.474 22 H 0.050 0.950 23 H 0.093 0.907 24 H 0.049 0.951 25 H 0.120 0.880 26 H 0.116 0.884 27 H 0.107 0.893 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.032 0.968 35 H 0.035 0.965 36 H 0.260 0.740 37 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.465 1.255 -3.868 14.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.044 3.956 4 C -0.239 4.239 5 C -0.108 4.108 6 C -0.096 4.096 7 C -0.080 4.080 8 C -0.196 4.196 9 C -0.194 4.194 10 C -0.024 4.024 11 C 0.018 3.982 12 C -0.535 4.535 13 H 0.074 0.926 14 C -0.142 4.142 15 N -0.535 5.535 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C 0.024 3.976 21 O -0.282 6.282 22 H 0.069 0.931 23 H 0.111 0.889 24 H 0.068 0.932 25 H 0.137 0.863 26 H 0.134 0.866 27 H 0.125 0.875 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -13.237 1.124 -3.281 13.684 hybrid contribution 0.058 0.067 0.493 0.501 sum -13.179 1.191 -2.788 13.523 Atomic orbital electron populations 1.22947 0.79667 1.03119 1.00871 1.86120 1.20250 1.27048 1.89272 1.19466 0.91778 0.84279 1.00099 1.20829 0.98944 0.92099 1.12022 1.20667 0.94206 0.96257 0.99691 1.19521 0.92409 0.94874 1.02811 1.20176 1.02696 0.90786 0.94318 1.21823 1.00501 0.99711 0.97532 1.21780 0.99625 0.99144 0.98810 1.20764 0.99656 0.89975 0.92005 1.18284 0.83455 0.98366 0.98138 1.20966 0.91497 1.49364 0.91696 0.92605 1.24947 0.96807 0.95421 0.97000 1.69957 1.02043 1.50839 1.30664 0.86525 0.78857 0.77604 0.85042 1.19714 1.20987 1.21018 1.17630 0.85351 0.86866 1.07746 1.84960 1.71938 1.39246 1.32036 0.93116 0.88875 0.93193 0.86262 0.86595 0.87452 0.93487 0.92954 0.92867 0.93070 0.93686 0.92320 0.94991 0.94750 0.93002 0.77260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.31 -5.34 10.28 -34.22 -0.35 -5.69 16 3 C 0.09 1.66 6.70 -39.12 -0.26 1.40 16 4 C -0.22 -3.60 9.04 -39.46 -0.36 -3.96 16 5 C -0.09 -1.51 8.74 -39.57 -0.35 -1.85 16 6 C -0.10 -1.85 4.79 -104.62 -0.50 -2.35 16 7 C -0.06 -1.11 2.82 -91.77 -0.26 -1.37 16 8 C -0.14 -2.07 9.06 37.16 0.34 -1.73 16 9 C -0.14 -2.18 8.94 37.16 0.33 -1.85 16 10 C -0.02 -0.52 5.08 -104.50 -0.53 -1.05 16 11 C 0.05 1.38 4.23 -29.04 -0.12 1.26 16 12 C -0.50 -13.97 8.72 -34.44 -0.30 -14.27 16 13 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.90 -26.33 13.29 55.43 0.74 -25.60 16 16 Si 0.89 21.92 29.54 -169.99 -5.02 16.89 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 C 0.07 1.48 6.69 -39.12 -0.26 1.22 16 21 O -0.47 -10.10 12.25 -34.22 -0.42 -10.52 16 22 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 23 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.05 0.50 7.66 -51.92 -0.40 0.11 16 25 H 0.12 1.57 6.30 -52.49 -0.33 1.24 16 26 H 0.12 1.63 7.09 -52.49 -0.37 1.26 16 27 H 0.11 2.30 5.40 -51.93 -0.28 2.02 16 28 H 0.05 0.62 7.72 -51.93 -0.40 0.22 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.04 0.62 7.09 -51.93 -0.37 0.26 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.03 0.87 7.38 -51.93 -0.38 0.48 16 35 H 0.03 0.90 6.51 -51.93 -0.34 0.56 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.37 6.17 9.06 45.56 0.41 6.58 16 LS Contribution 305.40 15.07 4.60 4.60 Total: -1.00 -31.83 305.40 -6.34 -38.17 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -4.51 Total: 3.79 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -1.38 Total: -21.65 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.74 Total: -25.60 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.77 Total: -16.21 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.83 -6.34 -38.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260031586.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.127 kcal (2) G-P(sol) polarization free energy of solvation -31.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds