Wall clock time and date at job start Mon Mar 30 2020 05:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35993 * 117.00368 * 2 1 4 4 C 1.38569 * 120.06983 * 359.97438 * 3 2 1 5 5 C 1.38246 * 119.99398 * 180.02562 * 4 3 2 6 6 C 1.38252 * 120.15246 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.92865 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.46968 * 294.51123 * 7 6 5 9 9 C 1.52999 * 109.47269 * 54.50612 * 7 6 5 10 10 C 1.38236 * 120.14195 * 0.02562 * 6 5 4 11 11 C 1.50701 * 119.99981 * 179.97438 * 10 6 5 12 12 C 1.50697 * 109.47051 * 84.66249 * 11 10 6 13 13 H 1.08010 * 120.00071 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00196 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00151 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00049 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47180 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47268 * 120.00073 * 16 14 12 19 19 H 1.48502 * 109.46882 * 239.99544 * 16 14 12 20 20 C 1.38569 * 120.00465 * 359.71967 * 10 6 5 21 21 O 1.35995 * 120.07652 * 180.27330 * 20 10 6 22 22 H 1.09000 * 109.47022 * 300.00305 * 1 2 3 23 23 H 1.08993 * 109.47812 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46832 * 59.99902 * 1 2 3 25 25 H 1.07993 * 120.00075 * 0.02562 * 4 3 2 26 26 H 1.08001 * 119.91958 * 180.02562 * 5 4 3 27 27 H 1.08994 * 109.47134 * 174.51128 * 7 6 5 28 28 H 1.08994 * 109.47189 * 60.00038 * 8 7 6 29 29 H 1.09003 * 109.46905 * 180.02562 * 8 7 6 30 30 H 1.09001 * 109.46972 * 299.99836 * 8 7 6 31 31 H 1.08994 * 109.47168 * 179.97438 * 9 7 6 32 32 H 1.08994 * 109.47463 * 300.00314 * 9 7 6 33 33 H 1.09005 * 109.46481 * 60.00195 * 9 7 6 34 34 H 1.09007 * 109.47374 * 204.65898 * 11 10 6 35 35 H 1.08999 * 109.47168 * 324.66712 * 11 10 6 36 36 H 0.96997 * 119.99966 * 180.02562 * 15 14 12 37 37 H 0.96695 * 113.99869 * 270.27440 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3748 -0.0005 5 6 1.9226 3.6057 -0.0011 6 6 3.3031 3.6798 -0.0005 7 6 3.9839 5.0242 -0.0005 8 6 3.6809 5.7493 -1.3133 9 6 3.4666 5.8578 1.1735 10 6 4.0603 2.5233 0.0000 11 6 5.5650 2.6078 0.0000 12 6 6.0591 2.7686 1.4146 13 1 5.3540 2.8054 2.2320 14 6 7.4111 2.8686 1.6654 15 7 8.2697 2.8233 0.6702 16 14 8.0236 3.0672 3.4190 17 1 6.8656 3.0890 4.3483 18 1 8.9143 1.9302 3.7640 19 1 8.7778 4.3408 3.5386 20 6 3.4360 1.2862 0.0059 21 8 4.1795 0.1476 0.0120 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 -0.8901 25 1 0.2147 2.3197 -0.0005 26 1 1.3344 4.5114 -0.0011 27 1 5.0605 4.8863 0.0982 28 1 2.6042 5.8872 -1.4121 29 1 4.1737 6.7216 -1.3135 30 1 4.0494 5.1554 -2.1498 31 1 3.9593 6.8301 1.1738 32 1 2.3900 5.9958 1.0748 33 1 3.6825 5.3412 2.1088 34 1 5.9802 1.6955 -0.4284 35 1 5.8807 3.4650 -0.5947 36 1 9.2209 2.8933 0.8467 37 1 4.3986 -0.1839 -0.8695 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260031586.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:23 Heat of formation + Delta-G solvation = -95.930250 kcal Electronic energy + Delta-G solvation = -18799.729118 eV Core-core repulsion = 15927.140599 eV Total energy + Delta-G solvation = -2872.588519 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.43522 -39.21114 -38.03128 -35.34255 -35.07396 -32.64375 -30.04825 -28.76213 -27.89196 -27.74502 -25.20440 -24.05450 -22.04811 -20.85030 -19.05539 -18.58258 -18.00168 -17.63801 -16.67031 -16.54002 -16.10399 -15.49309 -15.30342 -14.66684 -14.61699 -14.35651 -14.05103 -13.60296 -13.48049 -13.17366 -13.06016 -12.80498 -12.67433 -12.54812 -12.31425 -12.10162 -12.06035 -11.69937 -11.66518 -11.37810 -11.31458 -10.91028 -10.56465 -9.40274 -8.83667 -8.17868 -6.27599 0.42306 0.54218 1.36187 1.37695 1.50305 2.38030 2.43133 2.80783 3.13701 3.42267 3.95793 3.99227 4.21506 4.29596 4.43721 4.44083 4.47944 4.56464 4.66438 4.73952 4.83932 4.90123 4.94630 5.05161 5.07928 5.22225 5.29162 5.37314 5.42013 5.48125 5.55670 5.63758 5.77021 5.96353 6.04574 6.21998 6.44715 6.81545 7.00672 7.38546 8.91913 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018629 B = 0.008150 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.643300 B = 3434.925720 C = 4314.551682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.087 3.913 4 C -0.203 4.203 5 C -0.080 4.080 6 C -0.104 4.104 7 C -0.064 4.064 8 C -0.131 4.131 9 C -0.131 4.131 10 C -0.060 4.060 11 C 0.070 3.930 12 C -0.508 4.508 13 H 0.042 0.958 14 C 0.008 3.992 15 N -0.928 5.928 16 Si 0.955 3.045 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.271 1.271 20 C 0.041 3.959 21 O -0.498 6.498 22 H 0.062 0.938 23 H 0.117 0.883 24 H 0.070 0.930 25 H 0.163 0.837 26 H 0.156 0.844 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.033 0.967 34 H 0.000 1.000 35 H 0.015 0.985 36 H 0.264 0.736 37 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.580 2.373 -3.345 17.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.041 3.959 4 C -0.222 4.222 5 C -0.098 4.098 6 C -0.105 4.105 7 C -0.083 4.083 8 C -0.188 4.188 9 C -0.188 4.188 10 C -0.061 4.061 11 C 0.033 3.967 12 C -0.546 4.546 13 H 0.061 0.939 14 C -0.189 4.189 15 N -0.569 5.569 16 Si 0.780 3.220 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.196 1.196 20 C -0.004 4.004 21 O -0.308 6.308 22 H 0.081 0.919 23 H 0.135 0.865 24 H 0.088 0.912 25 H 0.180 0.820 26 H 0.174 0.826 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.018 0.982 35 H 0.033 0.967 36 H 0.073 0.927 37 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -16.366 2.238 -2.768 16.749 hybrid contribution 0.913 -0.347 0.280 1.016 sum -15.453 1.891 -2.488 15.766 Atomic orbital electron populations 1.23353 0.76583 1.05388 1.02342 1.86094 1.23394 1.26406 1.89012 1.19445 0.90899 0.85884 0.99659 1.21300 1.00896 0.90840 1.09141 1.21031 0.92922 0.98079 0.97784 1.19725 0.93835 0.94213 1.02686 1.20131 0.99858 0.91292 0.96987 1.21762 1.02398 0.99560 0.95073 1.21745 1.01665 0.98933 0.96472 1.20541 0.97681 0.92013 0.95840 1.17905 0.86650 0.95711 0.96385 1.21170 0.91677 1.49152 0.92597 0.93948 1.25767 0.96973 0.95071 1.01122 1.70065 1.02392 1.51696 1.32735 0.85539 0.78298 0.78065 0.80061 1.19444 1.20480 1.19637 1.17886 0.86995 0.86238 1.09292 1.84881 1.72577 1.39715 1.33588 0.91907 0.86525 0.91193 0.82004 0.82639 0.92264 0.90658 0.91658 0.94175 0.91700 0.90560 0.94815 0.98186 0.96662 0.92706 0.75777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.33 -10.80 10.28 -79.61 -0.82 -11.62 16 3 C 0.09 3.12 6.70 22.57 0.15 3.27 16 4 C -0.20 -5.89 9.04 22.35 0.20 -5.69 16 5 C -0.08 -2.41 8.74 22.27 0.19 -2.22 16 6 C -0.10 -3.99 4.79 -19.86 -0.10 -4.08 16 7 C -0.06 -2.30 2.82 -11.54 -0.03 -2.34 16 8 C -0.13 -3.69 9.06 71.98 0.65 -3.04 16 9 C -0.13 -3.97 8.94 71.98 0.64 -3.33 16 10 C -0.06 -2.78 5.08 -19.79 -0.10 -2.88 16 11 C 0.07 3.86 4.23 29.10 0.12 3.98 16 12 C -0.51 -30.06 8.72 25.60 0.22 -29.84 16 13 H 0.04 2.56 7.74 -2.91 -0.02 2.53 16 14 C 0.01 0.50 5.46 84.65 0.46 0.96 16 15 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 16 Si 0.96 46.05 29.54 68.60 2.03 48.08 16 17 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 20 C 0.04 1.79 6.69 22.57 0.15 1.95 16 21 O -0.50 -22.42 12.25 -79.63 -0.98 -23.40 16 22 H 0.06 1.08 7.66 -2.39 -0.02 1.06 16 23 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.07 1.09 7.66 -2.38 -0.02 1.07 16 25 H 0.16 3.29 6.30 -2.91 -0.02 3.27 16 26 H 0.16 3.44 7.09 -2.91 -0.02 3.42 16 27 H 0.06 2.69 5.40 -2.39 -0.01 2.68 16 28 H 0.07 1.69 7.72 -2.39 -0.02 1.68 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.08 1.81 7.09 -2.39 -0.02 1.79 16 33 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.00 -0.01 7.38 -2.38 -0.02 -0.03 16 35 H 0.02 0.87 6.51 -2.39 -0.02 0.86 16 36 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.39 13.89 9.06 -74.06 -0.67 13.21 16 Total: -1.00 -72.90 305.40 4.61 -68.29 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.40 Total: 17.03 kcal Atomic # 6 Polarization: -45.50 SS G_CDS: 3.69 Total: -41.81 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.28 Total: -56.58 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -1.79 Total: -35.01 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -72.90 4.61 -68.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260031586.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.637 kcal (2) G-P(sol) polarization free energy of solvation -72.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds