Wall clock time and date at job start Mon Mar 30 2020 06:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00131 * 2 1 4 4 C 1.52998 * 109.47111 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47422 * 305.00421 * 4 3 2 6 6 O 1.42906 * 109.46840 * 65.00189 * 4 3 2 7 7 C 1.42902 * 113.99848 * 269.99683 * 6 4 3 8 8 C 1.50691 * 109.47390 * 185.00005 * 4 3 2 9 9 C 1.38254 * 120.00360 * 280.02472 * 8 4 3 10 10 C 1.38216 * 120.00528 * 179.97438 * 9 8 4 11 11 C 1.38261 * 119.99683 * 359.75182 * 10 9 8 12 12 C 1.38212 * 119.99716 * 0.50410 * 11 10 9 13 13 C 1.50700 * 119.99804 * 179.77075 * 12 11 10 14 14 C 1.50706 * 109.47062 * 269.72032 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 C 1.38215 * 120.00217 * 99.99886 * 8 4 3 23 23 H 1.09000 * 109.47302 * 59.99840 * 1 2 3 24 24 H 1.09005 * 109.47033 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47093 * 299.99914 * 1 2 3 26 26 H 1.09001 * 109.47009 * 60.00109 * 3 2 1 27 27 H 1.08992 * 109.47402 * 300.00046 * 3 2 1 28 28 H 1.08996 * 109.47007 * 60.00635 * 7 6 4 29 29 H 1.09005 * 109.46898 * 179.97438 * 7 6 4 30 30 H 1.08995 * 109.47197 * 300.00039 * 7 6 4 31 31 H 1.08002 * 119.99952 * 0.02562 * 9 8 4 32 32 H 1.07998 * 120.00339 * 180.02562 * 10 9 8 33 33 H 1.07997 * 120.00049 * 180.27351 * 11 10 9 34 34 H 1.09004 * 109.47406 * 149.72738 * 13 12 11 35 35 H 1.08993 * 109.47274 * 29.72364 * 13 12 11 36 36 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 37 37 H 1.08009 * 119.99624 * 0.02562 * 22 8 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8508 0.5684 0.8426 6 8 3.9658 0.5791 -1.2202 7 6 4.0472 -0.8465 -1.1648 8 6 4.1480 2.5558 0.1245 9 6 4.2472 3.3716 -0.9873 10 6 4.8085 4.6296 -0.8736 11 6 5.2662 5.0740 0.3530 12 6 5.1719 4.2564 1.4633 13 6 5.6754 4.7389 2.7993 14 6 7.1237 4.3540 2.9590 15 1 7.6290 3.8144 2.1717 16 6 7.8039 4.6916 4.1097 17 7 7.1904 5.3542 5.0658 18 14 9.5993 4.2151 4.3074 19 1 9.6890 2.8792 4.9498 20 1 10.2485 4.1672 2.9728 21 1 10.2875 5.2201 5.1569 22 6 4.6102 2.9982 1.3496 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6886 1.8463 0.8900 27 1 1.6887 1.8464 -0.8899 28 1 3.0653 -1.2576 -0.9307 29 1 4.3801 -1.2291 -2.1297 30 1 4.7578 -1.1401 -0.3923 31 1 3.8853 3.0263 -1.9445 32 1 4.8856 5.2670 -1.7420 33 1 5.7008 6.0586 0.4427 34 1 5.0881 4.2817 3.5957 35 1 5.5795 5.8232 2.8537 36 1 6.2581 5.6019 4.9631 37 1 4.5327 2.3609 2.2182 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260050764.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:57 Heat of formation + Delta-G solvation = -83.381970 kcal Electronic energy + Delta-G solvation = -17983.112972 eV Core-core repulsion = 15111.068587 eV Total energy + Delta-G solvation = -2872.044385 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.48160 -38.08399 -36.90899 -33.86964 -32.17292 -31.00345 -28.77107 -27.01072 -26.46426 -25.82376 -23.36071 -22.91218 -21.43647 -19.83193 -17.03464 -16.78425 -16.52967 -16.05173 -15.78449 -15.33320 -14.85521 -14.28456 -14.02509 -13.82527 -13.66450 -13.20154 -12.62755 -12.42431 -12.39583 -12.09130 -11.59168 -11.49959 -11.33381 -11.17414 -11.02933 -10.67419 -10.36051 -10.15475 -9.92714 -9.80536 -9.46938 -8.96446 -8.39044 -8.30829 -7.81877 -6.39694 -4.10967 1.81554 2.05153 3.43018 3.46499 3.58785 3.62680 3.84270 4.36990 4.55667 4.98640 5.06808 5.08244 5.16934 5.26202 5.35221 5.41358 5.44621 5.45864 5.50657 5.60664 5.62811 5.72989 5.85330 5.86863 6.06922 6.21397 6.45178 6.68179 6.93594 6.96077 6.98270 7.08012 7.15871 7.32399 7.60172 7.62354 8.10872 8.42522 8.82365 9.59988 10.99309 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.025186 B = 0.004834 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.446084 B = 5791.004284 C = 5921.702700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.045 3.955 4 C 0.141 3.859 5 H 0.075 0.925 6 O -0.377 6.377 7 C 0.031 3.969 8 C -0.098 4.098 9 C -0.117 4.117 10 C -0.126 4.126 11 C -0.117 4.117 12 C -0.031 4.031 13 C 0.035 3.965 14 C -0.592 4.592 15 H 0.051 0.949 16 C 0.017 3.983 17 N -0.912 5.912 18 Si 1.072 2.928 19 H -0.287 1.287 20 H -0.288 1.288 21 H -0.284 1.284 22 C -0.109 4.109 23 H 0.040 0.960 24 H 0.084 0.916 25 H 0.041 0.959 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.019 0.981 35 H 0.020 0.980 36 H 0.269 0.731 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.083 -8.661 -11.360 18.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.032 4.032 4 C 0.083 3.917 5 H 0.093 0.907 6 O -0.295 6.295 7 C -0.066 4.066 8 C -0.098 4.098 9 C -0.135 4.135 10 C -0.144 4.144 11 C -0.135 4.135 12 C -0.031 4.031 13 C -0.002 4.002 14 C -0.630 4.630 15 H 0.070 0.930 16 C -0.187 4.187 17 N -0.548 5.548 18 Si 0.900 3.100 19 H -0.214 1.214 20 H -0.214 1.214 21 H -0.209 1.209 22 C -0.128 4.128 23 H 0.058 0.942 24 H 0.102 0.898 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.079 0.921 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.636 -8.628 -10.493 16.655 hybrid contribution -1.565 -0.068 -0.865 1.790 sum -11.201 -8.697 -11.359 18.169 Atomic orbital electron populations 1.22726 0.81238 1.02499 1.00017 1.87841 1.19642 1.28113 1.95467 1.23209 0.93976 0.84729 1.01257 1.20769 0.90524 0.92322 0.88040 0.90715 1.87893 1.87966 1.19831 1.33842 1.22830 1.00903 0.81089 1.01734 1.19360 1.02060 0.93880 0.94485 1.20700 1.01189 0.93913 0.97704 1.21050 0.99919 0.96119 0.97298 1.21124 0.99812 1.00191 0.92373 1.20388 0.92395 0.92793 0.97511 1.18476 0.96998 0.96167 0.88514 1.21931 0.95126 1.40510 1.05466 0.93036 1.25879 1.06055 0.94378 0.92368 1.70763 1.13443 1.36319 1.34274 0.83492 0.74376 0.76445 0.75653 1.21377 1.21385 1.20919 1.20852 0.99201 0.96534 0.96171 0.94153 0.89789 0.94059 0.92108 0.92310 0.92654 0.90263 0.94314 0.86565 0.86778 0.86437 0.96292 0.96196 0.92066 0.86474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.93 8.83 -40.09 -0.35 -5.29 16 3 C 0.05 0.59 5.58 37.16 0.21 0.80 16 4 C 0.14 2.14 2.70 -27.89 -0.08 2.07 16 5 H 0.07 1.13 7.65 -51.93 -0.40 0.73 16 6 O -0.38 -5.76 9.67 -40.09 -0.39 -6.15 16 7 C 0.03 0.38 10.71 101.05 1.08 1.46 16 8 C -0.10 -1.70 4.97 -104.63 -0.52 -2.22 16 9 C -0.12 -1.96 9.36 -39.58 -0.37 -2.33 16 10 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 11 C -0.12 -2.31 9.70 -39.58 -0.38 -2.70 16 12 C -0.03 -0.68 5.07 -104.63 -0.53 -1.21 16 13 C 0.04 0.90 4.42 -29.03 -0.13 0.77 16 14 C -0.59 -16.88 9.09 -34.44 -0.31 -17.20 16 15 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 17 N -0.91 -27.65 13.65 55.43 0.76 -26.89 16 18 Si 1.07 25.43 29.90 -169.99 -5.08 20.35 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C -0.11 -2.17 9.33 -39.58 -0.37 -2.54 16 23 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.66 6.40 -51.93 -0.33 0.32 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.04 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.12 1.75 7.78 -52.49 -0.41 1.34 16 32 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 33 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 34 H 0.02 0.50 7.96 -51.93 -0.41 0.09 16 35 H 0.02 0.52 7.94 -51.93 -0.41 0.11 16 36 H 0.27 8.08 7.22 -40.82 -0.29 7.78 16 37 H 0.12 2.27 8.04 -52.48 -0.42 1.84 16 LS Contribution 314.59 15.07 4.74 4.74 Total: -1.00 -31.36 314.59 -6.80 -38.16 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.68 Total: -1.09 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: -0.78 Total: -23.83 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: 0.76 Total: -26.89 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -0.74 Total: -11.43 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.08 Total: 20.35 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.36 -6.80 -38.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260050764.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.226 kcal (2) G-P(sol) polarization free energy of solvation -31.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds