Wall clock time and date at job start Mon Mar 30 2020 06:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99689 * 2 1 4 4 C 1.53001 * 109.46722 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47395 * 54.99940 * 4 3 2 6 6 O 1.42904 * 109.47232 * 294.99893 * 4 3 2 7 7 C 1.42899 * 113.99976 * 150.00099 * 6 4 3 8 8 C 1.50700 * 109.47033 * 174.99988 * 4 3 2 9 9 C 1.38262 * 120.00154 * 84.98126 * 8 4 3 10 10 C 1.38205 * 119.99867 * 180.02562 * 9 8 4 11 11 C 1.38252 * 120.00489 * 359.74451 * 10 9 8 12 12 C 1.38220 * 119.99594 * 0.52822 * 11 10 9 13 13 C 1.50698 * 119.99817 * 179.74538 * 12 11 10 14 14 C 1.50702 * 109.47462 * 269.72811 * 13 12 11 15 15 H 1.08002 * 119.99446 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00072 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 179.72119 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 C 1.38218 * 120.00189 * 264.99914 * 8 4 3 23 23 H 1.09001 * 109.47123 * 300.00259 * 1 2 3 24 24 H 1.08998 * 109.47353 * 59.99765 * 1 2 3 25 25 H 1.08990 * 109.47273 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47323 * 60.00453 * 3 2 1 27 27 H 1.09002 * 109.47094 * 299.99630 * 3 2 1 28 28 H 1.08996 * 109.47417 * 59.99822 * 7 6 4 29 29 H 1.08994 * 109.47154 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47348 * 300.00246 * 7 6 4 31 31 H 1.07995 * 119.99348 * 359.97123 * 9 8 4 32 32 H 1.08007 * 119.99826 * 179.97438 * 10 9 8 33 33 H 1.08003 * 120.00828 * 180.27593 * 11 10 9 34 34 H 1.09000 * 109.47438 * 149.72501 * 13 12 11 35 35 H 1.09001 * 109.47203 * 29.72554 * 13 12 11 36 36 H 0.96999 * 120.00128 * 180.27192 * 17 16 14 37 37 H 1.08005 * 119.99520 * 359.97438 * 22 8 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8508 0.5686 -0.8426 6 8 3.9659 0.5792 1.2201 7 6 5.1691 -0.1820 1.0988 8 6 4.1479 2.5560 -0.1245 9 6 4.3419 3.3310 1.0040 10 6 4.9031 4.5889 0.8903 11 6 5.2754 5.0702 -0.3511 12 6 5.0763 4.2977 -1.4799 13 6 5.4769 4.8246 -2.8338 14 6 4.3162 5.5629 -3.4491 15 1 3.3817 5.6423 -2.9134 16 6 4.4469 6.1362 -4.6961 17 7 3.4321 6.7758 -5.2354 18 14 6.0629 5.9983 -5.6229 19 1 6.9299 7.1544 -5.2806 20 1 6.7465 4.7366 -5.2408 21 1 5.7970 5.9943 -7.0838 22 6 4.5154 3.0392 -1.3662 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6887 1.8464 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 5.9766 0.4665 0.7592 29 1 5.4288 -0.6080 2.0678 30 1 5.0199 -0.9848 0.3767 31 1 4.0540 2.9537 1.9741 32 1 5.0542 5.1944 1.7717 33 1 5.7181 6.0513 -0.4395 34 1 5.7609 3.9925 -3.4781 35 1 6.3223 5.5038 -2.7237 36 1 3.5228 7.1757 -6.1145 37 1 4.3640 2.4338 -2.2477 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260050768.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:00 Heat of formation + Delta-G solvation = -75.446591 kcal Electronic energy + Delta-G solvation = -18026.295043 eV Core-core repulsion = 15154.594762 eV Total energy + Delta-G solvation = -2871.700281 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.48790 -37.90577 -36.98153 -33.53938 -32.10214 -31.28039 -28.93805 -27.53590 -26.63248 -25.76158 -23.27852 -22.81665 -21.31175 -19.60313 -16.81919 -16.75418 -16.67474 -15.95774 -15.67611 -15.24369 -15.00866 -14.40085 -14.29007 -13.96093 -13.68180 -12.89066 -12.56868 -12.42861 -12.30762 -12.09754 -11.71746 -11.68476 -11.35404 -11.21357 -10.86586 -10.74639 -10.48248 -10.09945 -9.95721 -9.68414 -9.54163 -9.40339 -8.61831 -8.31713 -7.88384 -6.10938 -4.10340 1.81925 2.03343 3.25781 3.33866 3.36319 3.66638 3.86896 4.37415 4.38228 5.07082 5.10951 5.15028 5.21909 5.30333 5.37284 5.45094 5.47599 5.48288 5.60467 5.60627 5.62577 5.71073 5.79708 5.82565 6.05263 6.18349 6.43780 6.64250 6.87215 6.93122 6.98008 7.03869 7.13376 7.33073 7.53432 7.55819 7.68009 8.45776 8.93980 9.49269 11.01978 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022100 B = 0.005456 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.690641 B = 5130.310916 C = 5684.616954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.069 3.931 4 C 0.140 3.860 5 H 0.075 0.925 6 O -0.374 6.374 7 C 0.034 3.966 8 C -0.124 4.124 9 C -0.117 4.117 10 C -0.126 4.126 11 C -0.115 4.115 12 C -0.031 4.031 13 C 0.014 3.986 14 C -0.514 4.514 15 H 0.073 0.927 16 C 0.070 3.930 17 N -0.899 5.899 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.265 1.265 21 H -0.286 1.286 22 C -0.109 4.109 23 H 0.040 0.960 24 H 0.042 0.958 25 H 0.083 0.917 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.027 0.973 35 H 0.024 0.976 36 H 0.264 0.736 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.397 -11.735 11.585 16.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.008 4.008 4 C 0.082 3.918 5 H 0.093 0.907 6 O -0.293 6.293 7 C -0.063 4.063 8 C -0.124 4.124 9 C -0.135 4.135 10 C -0.144 4.144 11 C -0.134 4.134 12 C -0.031 4.031 13 C -0.023 4.023 14 C -0.552 4.552 15 H 0.092 0.908 16 C -0.132 4.132 17 N -0.538 5.538 18 Si 0.705 3.295 19 H -0.201 1.201 20 H -0.189 1.189 21 H -0.212 1.212 22 C -0.127 4.127 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.102 0.898 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.137 0.863 34 H 0.046 0.954 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.344 -11.783 11.591 16.532 hybrid contribution 0.667 0.357 -0.861 1.146 sum 1.011 -11.426 10.730 15.707 Atomic orbital electron populations 1.22723 0.81159 1.02476 1.00112 1.87867 1.19547 1.27867 1.95488 1.22657 0.91721 0.84798 1.01590 1.20805 0.92177 0.90943 0.87836 0.90733 1.87888 1.42004 1.67637 1.31772 1.22735 0.86989 0.94553 1.02031 1.20014 1.02263 0.95952 0.94207 1.20715 1.00801 0.94174 0.97839 1.21047 1.00147 0.95900 0.97290 1.21129 1.00542 0.99629 0.92052 1.20236 0.93969 0.92435 0.96466 1.18816 0.97566 0.96454 0.89469 1.20921 0.98473 1.33498 1.02258 0.90842 1.24995 0.96449 0.94585 0.97178 1.69899 1.30782 1.36149 1.16954 0.86807 0.84371 0.79192 0.79159 1.20139 1.18946 1.21215 1.20890 0.99411 0.96467 0.95942 0.94130 0.93948 0.89818 0.92290 0.91245 0.93961 0.89972 0.94097 0.86482 0.86801 0.86323 0.95438 0.95802 0.92574 0.86374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.39 -5.51 10.67 -40.08 -0.43 -5.94 16 3 C 0.07 0.98 5.58 37.16 0.21 1.19 16 4 C 0.14 2.09 2.60 -27.88 -0.07 2.01 16 5 H 0.07 1.08 7.70 -51.93 -0.40 0.68 16 6 O -0.37 -5.45 9.46 -40.08 -0.38 -5.83 16 7 C 0.03 0.39 10.81 101.05 1.09 1.48 16 8 C -0.12 -2.06 4.96 -104.62 -0.52 -2.58 16 9 C -0.12 -1.88 9.35 -39.58 -0.37 -2.25 16 10 C -0.13 -2.05 10.05 -39.59 -0.40 -2.45 16 11 C -0.12 -2.17 9.70 -39.58 -0.38 -2.56 16 12 C -0.03 -0.65 5.07 -104.63 -0.53 -1.18 16 13 C 0.01 0.33 4.17 -29.03 -0.12 0.21 16 14 C -0.51 -14.43 9.65 -34.44 -0.33 -14.76 16 15 H 0.07 2.26 7.98 -52.49 -0.42 1.84 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 18 Si 0.88 21.18 27.47 -169.99 -4.67 16.51 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 20 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 C -0.11 -2.05 9.34 -39.59 -0.37 -2.42 16 23 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.44 8.09 -51.93 -0.42 0.02 16 31 H 0.12 1.71 7.63 -52.49 -0.40 1.31 16 32 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 33 H 0.12 2.14 8.06 -52.48 -0.42 1.71 16 34 H 0.03 0.64 7.14 -51.93 -0.37 0.27 16 35 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 37 H 0.12 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 315.58 15.07 4.76 4.76 Total: -1.00 -31.15 315.58 -6.52 -37.67 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.79 Total: -0.64 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -0.78 Total: -19.96 kcal Atomic # 7 Polarization: -27.33 SS G_CDS: 0.77 Total: -26.55 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -0.81 Total: -11.77 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.15 -6.52 -37.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260050768.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.777 kcal (2) G-P(sol) polarization free energy of solvation -31.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds