Wall clock time and date at job start Mon Mar 30 2020 06:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99689 * 2 1 4 4 C 1.53001 * 109.46722 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47395 * 54.99940 * 4 3 2 6 6 O 1.42904 * 109.47232 * 294.99893 * 4 3 2 7 7 C 1.42899 * 113.99976 * 150.00099 * 6 4 3 8 8 C 1.50700 * 109.47033 * 174.99988 * 4 3 2 9 9 C 1.38262 * 120.00154 * 84.98126 * 8 4 3 10 10 C 1.38205 * 119.99867 * 180.02562 * 9 8 4 11 11 C 1.38252 * 120.00489 * 359.74451 * 10 9 8 12 12 C 1.38220 * 119.99594 * 0.52822 * 11 10 9 13 13 C 1.50698 * 119.99817 * 179.74538 * 12 11 10 14 14 C 1.50702 * 109.47462 * 269.72811 * 13 12 11 15 15 H 1.08002 * 119.99446 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00072 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 179.72119 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 C 1.38218 * 120.00189 * 264.99914 * 8 4 3 23 23 H 1.09001 * 109.47123 * 300.00259 * 1 2 3 24 24 H 1.08998 * 109.47353 * 59.99765 * 1 2 3 25 25 H 1.08990 * 109.47273 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47323 * 60.00453 * 3 2 1 27 27 H 1.09002 * 109.47094 * 299.99630 * 3 2 1 28 28 H 1.08996 * 109.47417 * 59.99822 * 7 6 4 29 29 H 1.08994 * 109.47154 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47348 * 300.00246 * 7 6 4 31 31 H 1.07995 * 119.99348 * 359.97123 * 9 8 4 32 32 H 1.08007 * 119.99826 * 179.97438 * 10 9 8 33 33 H 1.08003 * 120.00828 * 180.27593 * 11 10 9 34 34 H 1.09000 * 109.47438 * 149.72501 * 13 12 11 35 35 H 1.09001 * 109.47203 * 29.72554 * 13 12 11 36 36 H 0.96999 * 120.00128 * 180.27192 * 17 16 14 37 37 H 1.08005 * 119.99520 * 359.97438 * 22 8 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8508 0.5686 -0.8426 6 8 3.9659 0.5792 1.2201 7 6 5.1691 -0.1820 1.0988 8 6 4.1479 2.5560 -0.1245 9 6 4.3419 3.3310 1.0040 10 6 4.9031 4.5889 0.8903 11 6 5.2754 5.0702 -0.3511 12 6 5.0763 4.2977 -1.4799 13 6 5.4769 4.8246 -2.8338 14 6 4.3162 5.5629 -3.4491 15 1 3.3817 5.6423 -2.9134 16 6 4.4469 6.1362 -4.6961 17 7 3.4321 6.7758 -5.2354 18 14 6.0629 5.9983 -5.6229 19 1 6.9299 7.1544 -5.2806 20 1 6.7465 4.7366 -5.2408 21 1 5.7970 5.9943 -7.0838 22 6 4.5154 3.0392 -1.3662 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6887 1.8464 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 5.9766 0.4665 0.7592 29 1 5.4288 -0.6080 2.0678 30 1 5.0199 -0.9848 0.3767 31 1 4.0540 2.9537 1.9741 32 1 5.0542 5.1944 1.7717 33 1 5.7181 6.0513 -0.4395 34 1 5.7609 3.9925 -3.4781 35 1 6.3223 5.5038 -2.7237 36 1 3.5228 7.1757 -6.1145 37 1 4.3640 2.4338 -2.2477 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260050768.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:59 Heat of formation + Delta-G solvation = -94.564720 kcal Electronic energy + Delta-G solvation = -18027.124067 eV Core-core repulsion = 15154.594762 eV Total energy + Delta-G solvation = -2872.529305 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.76945 -39.10472 -38.05315 -35.43972 -33.64837 -32.85506 -30.19409 -29.25063 -27.56649 -26.74293 -24.94721 -24.23223 -22.73227 -21.05409 -18.98314 -17.92912 -17.82266 -17.18647 -16.74839 -16.37846 -16.29427 -16.10258 -15.69849 -15.24518 -14.82295 -14.66143 -14.10400 -13.70424 -13.59648 -13.52357 -13.30583 -12.98925 -12.62274 -12.49214 -12.30292 -11.99178 -11.96943 -11.89622 -11.68259 -11.44296 -10.80734 -10.71962 -10.63978 -9.68878 -9.39324 -8.31086 -6.36319 0.43881 0.60897 1.35828 1.37546 1.49309 2.34282 2.60891 2.77079 3.03260 3.04160 3.84447 3.95380 4.09653 4.18961 4.20044 4.35027 4.43235 4.47623 4.56189 4.56598 4.59950 4.65660 4.70554 4.77295 4.83754 4.87585 4.95899 5.02073 5.23086 5.28016 5.55064 5.60478 5.63397 5.95955 6.13405 6.14652 6.22176 6.27867 6.69820 7.27333 8.85423 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022100 B = 0.005456 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.690641 B = 5130.310916 C = 5684.616954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.071 3.929 4 C 0.144 3.856 5 H 0.076 0.924 6 O -0.384 6.384 7 C 0.028 3.972 8 C -0.117 4.117 9 C -0.111 4.111 10 C -0.117 4.117 11 C -0.130 4.130 12 C -0.064 4.064 13 C 0.020 3.980 14 C -0.520 4.520 15 H 0.028 0.972 16 C 0.009 3.991 17 N -0.948 5.948 18 Si 0.950 3.050 19 H -0.264 1.264 20 H -0.247 1.247 21 H -0.283 1.283 22 C -0.121 4.121 23 H 0.050 0.950 24 H 0.044 0.956 25 H 0.103 0.897 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.039 0.961 29 H 0.105 0.895 30 H 0.048 0.952 31 H 0.139 0.861 32 H 0.148 0.852 33 H 0.121 0.879 34 H 0.030 0.970 35 H 0.031 0.969 36 H 0.268 0.732 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.573 -12.929 12.946 18.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C -0.005 4.005 4 C 0.086 3.914 5 H 0.094 0.906 6 O -0.303 6.303 7 C -0.068 4.068 8 C -0.118 4.118 9 C -0.129 4.129 10 C -0.135 4.135 11 C -0.148 4.148 12 C -0.064 4.064 13 C -0.017 4.017 14 C -0.558 4.558 15 H 0.046 0.954 16 C -0.188 4.188 17 N -0.589 5.589 18 Si 0.773 3.227 19 H -0.189 1.189 20 H -0.170 1.170 21 H -0.208 1.208 22 C -0.139 4.139 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.122 0.878 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.123 0.877 30 H 0.066 0.934 31 H 0.157 0.843 32 H 0.165 0.835 33 H 0.139 0.861 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.523 -12.993 12.973 18.424 hybrid contribution 0.188 0.677 -1.166 1.361 sum 1.711 -12.316 11.807 17.147 Atomic orbital electron populations 1.22952 0.79395 1.04054 1.00736 1.87832 1.21506 1.27572 1.95585 1.22562 0.91479 0.85095 1.01382 1.20721 0.92477 0.89954 0.88293 0.90639 1.87869 1.43165 1.67892 1.31366 1.22935 0.85798 0.94439 1.03673 1.20183 1.01267 0.96846 0.93494 1.21027 0.99550 0.93867 0.98482 1.21369 0.98608 0.96185 0.97349 1.21259 1.01204 0.99695 0.92613 1.20137 0.96566 0.93900 0.95772 1.18661 0.95879 0.96029 0.91112 1.21145 0.98366 1.33921 1.02345 0.95397 1.25967 1.00574 0.94051 0.98226 1.70055 1.33487 1.37659 1.17686 0.85663 0.79385 0.80249 0.77426 1.18912 1.17003 1.20837 1.20919 0.99940 0.96072 0.97008 0.93132 0.93699 0.87836 0.91904 0.92056 0.94272 0.87703 0.93380 0.84332 0.83457 0.86142 0.95219 0.95108 0.92344 0.86702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 11.01 113.37 1.25 1.73 16 2 O -0.41 -10.97 10.67 -144.34 -1.54 -12.51 16 3 C 0.07 1.97 5.58 71.98 0.40 2.38 16 4 C 0.14 4.09 2.60 29.85 0.08 4.17 16 5 H 0.08 2.11 7.70 -2.39 -0.02 2.10 16 6 O -0.38 -10.33 9.46 -144.34 -1.37 -11.70 16 7 C 0.03 0.58 10.81 113.37 1.23 1.80 16 8 C -0.12 -3.77 4.96 -19.86 -0.10 -3.87 16 9 C -0.11 -3.32 9.35 22.27 0.21 -3.11 16 10 C -0.12 -3.57 10.05 22.27 0.22 -3.34 16 11 C -0.13 -4.80 9.70 22.27 0.22 -4.58 16 12 C -0.06 -2.67 5.07 -19.87 -0.10 -2.77 16 13 C 0.02 0.97 4.17 29.10 0.12 1.09 16 14 C -0.52 -30.15 9.65 25.60 0.25 -29.90 16 15 H 0.03 1.81 7.98 -2.91 -0.02 1.79 16 16 C 0.01 0.52 5.47 84.65 0.46 0.98 16 17 N -0.95 -59.34 13.96 21.45 0.30 -59.04 16 18 Si 0.95 43.70 27.47 68.60 1.88 45.58 16 19 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 20 H -0.25 -10.52 6.54 99.48 0.65 -9.87 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 C -0.12 -4.58 9.34 22.27 0.21 -4.37 16 23 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.10 1.69 8.14 -2.39 -0.02 1.68 16 30 H 0.05 0.93 8.09 -2.39 -0.02 0.91 16 31 H 0.14 3.58 7.63 -2.91 -0.02 3.55 16 32 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 33 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 34 H 0.03 1.38 7.14 -2.39 -0.02 1.36 16 35 H 0.03 1.40 7.51 -2.39 -0.02 1.39 16 36 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 37 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -68.01 315.58 4.69 -63.32 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.97 Total: 14.15 kcal Atomic # 6 Polarization: -44.25 SS G_CDS: 4.44 Total: -39.81 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: 0.30 Total: -59.04 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -2.91 Total: -24.20 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.88 Total: 45.58 kcal Total: -68.01 4.69 -63.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260050768.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.246 kcal (2) G-P(sol) polarization free energy of solvation -68.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds