Wall clock time and date at job start Mon Mar 30 2020 06:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42895 * 109.47057 * 2 1 4 4 C 1.35993 * 116.99956 * 180.02562 * 3 2 1 5 5 C 1.38564 * 120.07872 * 89.99741 * 4 3 2 6 6 C 1.50701 * 119.99623 * 359.95553 * 5 4 3 7 7 C 1.52997 * 109.47212 * 85.00033 * 6 5 4 8 8 C 1.50697 * 109.47466 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99890 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00428 * 179.97438 * 8 7 6 11 11 N 1.31517 * 120.00362 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 119.99850 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.47052 * 89.99717 * 12 10 8 14 14 H 1.48495 * 109.47307 * 209.99656 * 12 10 8 15 15 H 1.48500 * 109.47143 * 330.00164 * 12 10 8 16 16 C 1.38238 * 120.00303 * 180.23075 * 5 4 3 17 17 C 1.38261 * 120.14448 * 359.49580 * 16 5 4 18 18 C 1.38240 * 120.14521 * 0.50582 * 17 16 5 19 19 C 1.38566 * 119.99735 * 359.74541 * 18 17 16 20 20 O 1.35997 * 120.06936 * 180.02562 * 19 18 17 21 21 C 1.42903 * 117.00298 * 359.97438 * 20 19 18 22 22 H 1.08998 * 109.47197 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47283 * 300.00172 * 1 2 3 24 24 H 1.09005 * 109.46880 * 60.00348 * 1 2 3 25 25 H 1.09003 * 109.46900 * 239.99489 * 2 1 3 26 26 H 1.08995 * 109.46438 * 120.00021 * 2 1 3 27 27 H 1.09002 * 109.47060 * 205.00088 * 6 5 4 28 28 H 1.09001 * 109.47380 * 325.00175 * 6 5 4 29 29 H 1.09002 * 109.47153 * 299.99998 * 7 6 5 30 30 H 1.08998 * 109.47533 * 59.99628 * 7 6 5 31 31 H 0.96994 * 119.99814 * 180.02562 * 11 10 8 32 32 H 1.07999 * 119.92793 * 179.74772 * 16 5 4 33 33 H 1.07995 * 119.92250 * 180.25243 * 17 16 5 34 34 H 1.07996 * 119.99977 * 179.77055 * 18 17 16 35 35 H 1.08997 * 109.47432 * 59.99547 * 21 20 19 36 36 H 1.08996 * 109.47221 * 180.02562 * 21 20 19 37 37 H 1.09009 * 109.46664 * 299.99740 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3546 1.5254 -0.0005 5 6 4.0425 1.6165 -1.1999 6 6 3.2968 1.5172 -2.5057 7 6 2.7472 2.8937 -2.8852 8 6 2.0020 2.7945 -4.1912 9 1 1.9275 1.8445 -4.6996 10 6 1.4145 3.9162 -4.7367 11 7 0.7637 3.8295 -5.8763 12 14 1.5416 5.5589 -3.8564 13 1 2.7576 6.2753 -4.3183 14 1 0.3400 6.3771 -4.1593 15 1 1.6284 5.3301 -2.3917 16 6 5.4136 1.7929 -1.1986 17 6 6.1002 1.8892 -0.0024 18 6 5.4199 1.7991 1.1977 19 6 4.0463 1.6171 1.2034 20 8 3.3755 1.5288 2.3832 21 6 4.1505 1.6314 3.5794 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8900 26 1 1.8932 -0.5138 0.8900 27 1 3.9742 1.1688 -3.2853 28 1 2.4715 0.8130 -2.4001 29 1 2.0698 3.2420 -2.1055 30 1 3.5724 3.5980 -2.9907 31 1 0.3508 4.6188 -6.2602 32 1 5.9492 1.8597 -2.1341 33 1 7.1708 2.0310 -0.0056 34 1 5.9590 1.8709 2.1307 35 1 4.6575 2.5960 3.6023 36 1 3.4947 1.5445 4.4457 37 1 4.8905 0.8313 3.6026 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260050897.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:38 Heat of formation + Delta-G solvation = -64.030194 kcal Electronic energy + Delta-G solvation = -18502.509046 eV Core-core repulsion = 15631.303817 eV Total energy + Delta-G solvation = -2871.205229 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.34973 -38.13733 -36.85603 -33.88878 -31.98949 -31.44315 -29.33469 -29.00082 -27.20996 -25.12235 -22.95416 -21.93410 -21.57383 -20.08162 -17.89569 -17.11417 -16.67453 -16.48550 -15.78554 -14.96792 -14.81098 -14.33073 -14.08394 -13.83344 -13.51644 -12.79722 -12.65104 -12.48296 -12.23087 -12.02999 -11.91850 -11.53948 -11.43138 -11.16404 -11.05734 -10.92152 -10.70468 -10.14940 -9.77243 -9.70890 -9.41099 -9.10402 -8.46442 -8.25482 -7.94117 -5.98094 -3.95333 1.41329 1.59123 3.29066 3.37511 3.44740 3.53477 3.68828 4.17117 4.53281 4.86777 5.00913 5.05224 5.13813 5.28724 5.34601 5.37143 5.40532 5.46311 5.55755 5.60407 5.65763 5.83284 6.04823 6.13697 6.19966 6.37345 6.40256 6.50808 6.58197 6.79050 6.85679 6.99181 7.31272 7.38269 7.55986 7.85573 7.99263 8.59424 9.06157 9.65248 11.15291 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021111 B = 0.006701 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.010906 B = 4177.424478 C = 4670.409876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.064 3.936 3 O -0.314 6.314 4 C 0.066 3.934 5 C -0.044 4.044 6 C -0.065 4.065 7 C -0.003 4.003 8 C -0.516 4.516 9 H 0.072 0.928 10 C 0.068 3.932 11 N -0.905 5.905 12 Si 0.875 3.125 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.263 1.263 16 C -0.145 4.145 17 C -0.087 4.087 18 C -0.215 4.215 19 C 0.106 3.894 20 O -0.309 6.309 21 C 0.027 3.973 22 H 0.069 0.931 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.052 0.948 26 H 0.045 0.955 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.010 0.990 31 H 0.262 0.738 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.053 0.947 36 H 0.096 0.904 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.085 -6.922 17.193 20.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.011 4.011 3 O -0.231 6.231 4 C 0.021 3.979 5 C -0.045 4.045 6 C -0.103 4.103 7 C -0.040 4.040 8 C -0.554 4.554 9 H 0.090 0.910 10 C -0.133 4.133 11 N -0.545 5.545 12 Si 0.702 3.298 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.187 1.187 16 C -0.164 4.164 17 C -0.105 4.105 18 C -0.234 4.234 19 C 0.060 3.940 20 O -0.222 6.222 21 C -0.068 4.068 22 H 0.088 0.912 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.029 0.971 31 H 0.072 0.928 32 H 0.147 0.853 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.617 -6.714 17.108 19.895 hybrid contribution 0.483 0.866 0.548 1.133 sum 8.100 -5.848 17.656 20.287 Atomic orbital electron populations 1.21736 0.93386 1.01987 1.03641 1.22632 0.95558 0.82961 0.99910 1.86160 1.16700 1.26262 1.93965 1.17816 0.83907 1.07024 0.89149 1.20582 0.93702 0.94712 0.95458 1.20583 0.98296 1.01189 0.90205 1.19517 0.95871 0.91336 0.97324 1.21114 1.32867 0.96940 1.04518 0.91019 1.24972 0.94719 0.98923 0.94653 1.69913 1.36107 1.29774 1.18677 0.86833 0.77524 0.84148 0.81246 1.20366 1.21399 1.18712 1.20973 0.93381 1.03696 0.98308 1.20897 0.99567 0.98262 0.91765 1.20997 0.92554 1.10545 0.99315 1.19453 0.90784 0.98334 0.85412 1.86165 1.35976 1.87902 1.12148 1.23019 0.97013 1.01034 0.85749 0.91210 0.92028 0.90954 0.93010 0.93715 0.91530 0.91378 0.95764 0.97132 0.92818 0.85339 0.85892 0.85646 0.92825 0.88531 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 10.28 37.16 0.38 -1.69 16 2 C 0.06 1.00 6.45 37.16 0.24 1.24 16 3 O -0.31 -6.11 9.11 -34.22 -0.31 -6.42 16 4 C 0.07 1.22 5.71 -39.12 -0.22 1.00 16 5 C -0.04 -0.82 5.14 -104.50 -0.54 -1.36 16 6 C -0.07 -1.37 5.00 -27.88 -0.14 -1.51 16 7 C 0.00 -0.08 4.02 -27.89 -0.11 -0.19 16 8 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 9 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 10 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 11 N -0.91 -28.47 13.96 55.43 0.77 -27.70 16 12 Si 0.88 22.69 27.47 -169.99 -4.67 18.02 16 13 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 15 H -0.26 -6.74 6.54 56.52 0.37 -6.37 16 16 C -0.15 -2.31 9.67 -39.57 -0.38 -2.69 16 17 C -0.09 -1.17 10.04 -39.57 -0.40 -1.57 16 18 C -0.22 -2.94 9.04 -39.46 -0.36 -3.29 16 19 C 0.11 1.72 6.70 -39.12 -0.26 1.46 16 20 O -0.31 -4.64 10.28 -34.24 -0.35 -4.99 16 21 C 0.03 0.26 9.81 101.05 0.99 1.25 16 22 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.05 0.80 7.17 -51.93 -0.37 0.42 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 1.32 8.05 -51.93 -0.42 0.91 16 28 H 0.07 1.43 6.42 -51.93 -0.33 1.10 16 29 H 0.02 0.64 7.20 -51.93 -0.37 0.27 16 30 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 31 H 0.26 7.72 8.31 -40.82 -0.34 7.39 16 32 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.13 1.32 6.30 -52.49 -0.33 0.99 16 35 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.42 7.67 -51.92 -0.40 0.02 16 LS Contribution 309.73 15.07 4.67 4.67 Total: -1.00 -33.47 309.73 -6.68 -40.16 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -5.56 Total: -2.87 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -1.23 Total: -20.85 kcal Atomic # 7 Polarization: -28.47 SS G_CDS: 0.77 Total: -27.70 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -0.66 Total: -11.41 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.67 Total: 18.02 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.47 -6.68 -40.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260050897.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.874 kcal (2) G-P(sol) polarization free energy of solvation -33.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds