Wall clock time and date at job start Mon Mar 30 2020 06:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42895 * 109.47057 * 2 1 4 4 C 1.35993 * 116.99956 * 180.02562 * 3 2 1 5 5 C 1.38564 * 120.07872 * 89.99741 * 4 3 2 6 6 C 1.50701 * 119.99623 * 359.95553 * 5 4 3 7 7 C 1.52997 * 109.47212 * 85.00033 * 6 5 4 8 8 C 1.50697 * 109.47466 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99890 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00428 * 179.97438 * 8 7 6 11 11 N 1.31517 * 120.00362 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 119.99850 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.47052 * 89.99717 * 12 10 8 14 14 H 1.48495 * 109.47307 * 209.99656 * 12 10 8 15 15 H 1.48500 * 109.47143 * 330.00164 * 12 10 8 16 16 C 1.38238 * 120.00303 * 180.23075 * 5 4 3 17 17 C 1.38261 * 120.14448 * 359.49580 * 16 5 4 18 18 C 1.38240 * 120.14521 * 0.50582 * 17 16 5 19 19 C 1.38566 * 119.99735 * 359.74541 * 18 17 16 20 20 O 1.35997 * 120.06936 * 180.02562 * 19 18 17 21 21 C 1.42903 * 117.00298 * 359.97438 * 20 19 18 22 22 H 1.08998 * 109.47197 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47283 * 300.00172 * 1 2 3 24 24 H 1.09005 * 109.46880 * 60.00348 * 1 2 3 25 25 H 1.09003 * 109.46900 * 239.99489 * 2 1 3 26 26 H 1.08995 * 109.46438 * 120.00021 * 2 1 3 27 27 H 1.09002 * 109.47060 * 205.00088 * 6 5 4 28 28 H 1.09001 * 109.47380 * 325.00175 * 6 5 4 29 29 H 1.09002 * 109.47153 * 299.99998 * 7 6 5 30 30 H 1.08998 * 109.47533 * 59.99628 * 7 6 5 31 31 H 0.96994 * 119.99814 * 180.02562 * 11 10 8 32 32 H 1.07999 * 119.92793 * 179.74772 * 16 5 4 33 33 H 1.07995 * 119.92250 * 180.25243 * 17 16 5 34 34 H 1.07996 * 119.99977 * 179.77055 * 18 17 16 35 35 H 1.08997 * 109.47432 * 59.99547 * 21 20 19 36 36 H 1.08996 * 109.47221 * 180.02562 * 21 20 19 37 37 H 1.09009 * 109.46664 * 299.99740 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3546 1.5254 -0.0005 5 6 4.0425 1.6165 -1.1999 6 6 3.2968 1.5172 -2.5057 7 6 2.7472 2.8937 -2.8852 8 6 2.0020 2.7945 -4.1912 9 1 1.9275 1.8445 -4.6996 10 6 1.4145 3.9162 -4.7367 11 7 0.7637 3.8295 -5.8763 12 14 1.5416 5.5589 -3.8564 13 1 2.7576 6.2753 -4.3183 14 1 0.3400 6.3771 -4.1593 15 1 1.6284 5.3301 -2.3917 16 6 5.4136 1.7929 -1.1986 17 6 6.1002 1.8892 -0.0024 18 6 5.4199 1.7991 1.1977 19 6 4.0463 1.6171 1.2034 20 8 3.3755 1.5288 2.3832 21 6 4.1505 1.6314 3.5794 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8900 26 1 1.8932 -0.5138 0.8900 27 1 3.9742 1.1688 -3.2853 28 1 2.4715 0.8130 -2.4001 29 1 2.0698 3.2420 -2.1055 30 1 3.5724 3.5980 -2.9907 31 1 0.3508 4.6188 -6.2602 32 1 5.9492 1.8597 -2.1341 33 1 7.1708 2.0310 -0.0056 34 1 5.9590 1.8709 2.1307 35 1 4.6575 2.5960 3.6023 36 1 3.4947 1.5445 4.4457 37 1 4.8905 0.8313 3.6026 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260050897.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:38 Heat of formation + Delta-G solvation = -84.587020 kcal Electronic energy + Delta-G solvation = -18503.400457 eV Core-core repulsion = 15631.303817 eV Total energy + Delta-G solvation = -2872.096640 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.52199 -39.29708 -38.08784 -35.78303 -33.91203 -32.67702 -30.75841 -30.31871 -28.15498 -26.86420 -24.19471 -23.24848 -23.08610 -21.66481 -19.26227 -18.77983 -18.16819 -17.77531 -16.80031 -16.37828 -16.04395 -15.93316 -15.40551 -15.17937 -14.94518 -14.59477 -14.43158 -13.69565 -13.58190 -13.26407 -13.09444 -13.00894 -12.88079 -12.48478 -12.42101 -12.20781 -12.08136 -11.78063 -11.73761 -11.56457 -11.32807 -10.78757 -10.70799 -9.55292 -9.08520 -8.30934 -6.33750 0.22284 0.40858 1.31143 1.34368 1.47968 2.31627 2.34657 2.52858 2.95281 3.04549 3.84535 3.97709 4.09952 4.14811 4.28091 4.33808 4.39134 4.40980 4.43529 4.44554 4.56888 4.68849 4.72550 4.77588 4.89733 4.97458 5.07448 5.22594 5.24909 5.35177 5.40309 5.49052 5.60781 5.71659 5.78796 6.26247 6.27108 6.71925 6.75936 7.30600 8.85733 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021111 B = 0.006701 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.010906 B = 4177.424478 C = 4670.409876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.060 3.940 3 O -0.344 6.344 4 C 0.036 3.964 5 C -0.072 4.072 6 C -0.055 4.055 7 C 0.007 3.993 8 C -0.527 4.527 9 H 0.037 0.963 10 C 0.011 3.989 11 N -0.948 5.948 12 Si 0.942 3.058 13 H -0.261 1.261 14 H -0.279 1.279 15 H -0.260 1.260 16 C -0.153 4.153 17 C -0.075 4.075 18 C -0.202 4.202 19 C 0.098 3.902 20 O -0.332 6.332 21 C 0.016 3.984 22 H 0.100 0.900 23 H 0.065 0.935 24 H 0.047 0.953 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.008 0.992 30 H 0.015 0.985 31 H 0.267 0.733 32 H 0.139 0.861 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.065 0.935 36 H 0.116 0.884 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.296 -6.287 19.890 23.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.014 4.014 3 O -0.262 6.262 4 C -0.008 4.008 5 C -0.072 4.072 6 C -0.092 4.092 7 C -0.031 4.031 8 C -0.565 4.565 9 H 0.056 0.944 10 C -0.186 4.186 11 N -0.588 5.588 12 Si 0.766 3.234 13 H -0.186 1.186 14 H -0.205 1.205 15 H -0.185 1.185 16 C -0.171 4.171 17 C -0.093 4.093 18 C -0.221 4.221 19 C 0.052 3.948 20 O -0.246 6.246 21 C -0.078 4.078 22 H 0.118 0.882 23 H 0.084 0.916 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.026 0.974 30 H 0.034 0.966 31 H 0.076 0.924 32 H 0.157 0.843 33 H 0.182 0.818 34 H 0.181 0.819 35 H 0.083 0.917 36 H 0.134 0.866 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.841 -6.092 19.817 22.949 hybrid contribution -0.183 0.570 -0.221 0.638 sum 9.659 -5.522 19.596 22.534 Atomic orbital electron populations 1.21752 0.92302 1.03671 1.02537 1.22789 0.96460 0.81970 1.00196 1.86100 1.17816 1.28054 1.94221 1.18121 0.83724 1.08540 0.90405 1.20374 0.94922 0.97927 0.94010 1.20297 0.98249 0.98311 0.92368 1.19346 0.95146 0.94106 0.94478 1.21422 1.33384 0.95708 1.06005 0.94448 1.25869 0.94296 1.03035 0.95376 1.70045 1.37265 1.31195 1.20345 0.85771 0.78395 0.79329 0.79902 1.18571 1.20474 1.18456 1.21190 0.92270 1.03511 1.00121 1.21330 1.01436 0.96023 0.90528 1.21454 0.91506 1.08060 1.01055 1.19528 0.91720 0.98290 0.85267 1.86132 1.37698 1.87778 1.13020 1.23383 0.97815 1.02378 0.84183 0.88155 0.91618 0.93409 0.93697 0.92281 0.91179 0.92739 0.97402 0.96630 0.92410 0.84298 0.81791 0.81889 0.91663 0.86591 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 10.28 71.98 0.74 -3.34 16 2 C 0.06 1.92 6.45 71.98 0.46 2.39 16 3 O -0.34 -13.77 9.11 -79.60 -0.73 -14.49 16 4 C 0.04 1.35 5.71 22.57 0.13 1.48 16 5 C -0.07 -2.67 5.14 -19.79 -0.10 -2.77 16 6 C -0.05 -2.39 5.00 29.85 0.15 -2.24 16 7 C 0.01 0.34 4.02 29.85 0.12 0.46 16 8 C -0.53 -32.03 9.66 25.60 0.25 -31.78 16 9 H 0.04 2.45 7.99 -2.91 -0.02 2.43 16 10 C 0.01 0.69 5.47 84.65 0.46 1.15 16 11 N -0.95 -61.13 13.96 21.45 0.30 -60.83 16 12 Si 0.94 47.20 27.47 68.60 1.88 49.08 16 13 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 14 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 15 H -0.26 -12.85 6.54 99.48 0.65 -12.20 16 16 C -0.15 -4.56 9.67 22.28 0.22 -4.34 16 17 C -0.08 -1.74 10.04 22.28 0.22 -1.51 16 18 C -0.20 -4.72 9.04 22.35 0.20 -4.52 16 19 C 0.10 2.99 6.70 22.57 0.15 3.15 16 20 O -0.33 -9.32 10.28 -79.65 -0.82 -10.14 16 21 C 0.02 0.26 9.81 113.37 1.11 1.37 16 22 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 23 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 24 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 25 H 0.04 1.46 7.17 -2.39 -0.02 1.44 16 26 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.07 2.89 8.05 -2.39 -0.02 2.87 16 28 H 0.05 2.44 6.42 -2.39 -0.02 2.43 16 29 H 0.01 0.42 7.20 -2.39 -0.02 0.40 16 30 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 31 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 32 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 33 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 34 H 0.16 2.51 6.30 -2.91 -0.02 2.49 16 35 H 0.06 0.88 7.66 -2.39 -0.02 0.86 16 36 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 0.85 7.67 -2.38 -0.02 0.83 16 Total: -1.00 -75.01 309.73 5.74 -69.27 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 0.98 Total: 7.62 kcal Atomic # 6 Polarization: -44.62 SS G_CDS: 4.12 Total: -40.51 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: 0.30 Total: -60.83 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -1.54 Total: -24.63 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.88 Total: 49.08 kcal Total: -75.01 5.74 -69.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260050897.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.315 kcal (2) G-P(sol) polarization free energy of solvation -75.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds