Wall clock time and date at job start Mon Mar 30 2020 05:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50695 * 109.47410 * 2 1 4 4 C 1.38258 * 119.92464 * 264.98146 * 3 2 1 5 5 C 1.38238 * 120.14728 * 179.97438 * 4 3 2 6 6 C 1.38564 * 120.00129 * 0.02562 * 5 4 3 7 7 O 1.35990 * 120.07764 * 179.97438 * 6 5 4 8 8 C 1.42904 * 116.99878 * 359.97438 * 7 6 5 9 9 C 1.39166 * 119.85170 * 359.76875 * 6 5 4 10 10 O 1.35990 * 120.07224 * 180.23080 * 9 6 5 11 11 C 1.42902 * 117.00247 * 270.22910 * 10 9 6 12 12 C 1.38233 * 119.93054 * 84.99920 * 3 2 1 13 13 C 1.50700 * 119.99980 * 359.97438 * 12 3 2 14 14 C 1.50702 * 109.46869 * 90.00014 * 13 12 3 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99985 * 180.27663 * 16 14 13 18 18 Si 1.86800 * 119.99777 * 0.28166 * 16 14 13 19 19 H 1.48498 * 109.47109 * 89.99834 * 18 16 14 20 20 H 1.48507 * 109.46754 * 209.99574 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99405 * 18 16 14 22 22 H 1.09005 * 109.47517 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46944 * 300.00069 * 1 2 3 24 24 H 1.09000 * 109.47254 * 60.00407 * 1 2 3 25 25 H 1.09001 * 109.47219 * 239.99465 * 2 1 3 26 26 H 1.09008 * 109.47193 * 120.00206 * 2 1 3 27 27 H 1.07997 * 119.92717 * 359.97438 * 4 3 2 28 28 H 1.08000 * 120.00080 * 180.02562 * 5 4 3 29 29 H 1.08998 * 109.47098 * 179.97438 * 8 7 6 30 30 H 1.08992 * 109.46706 * 299.99770 * 8 7 6 31 31 H 1.09000 * 109.47056 * 60.00202 * 8 7 6 32 32 H 1.08998 * 109.46987 * 300.00272 * 11 10 9 33 33 H 1.08994 * 109.46614 * 59.99977 * 11 10 9 34 34 H 1.08998 * 109.47184 * 180.02562 * 11 10 9 35 35 H 1.09004 * 109.47210 * 330.00307 * 13 12 3 36 36 H 1.08994 * 109.47551 * 209.99960 * 13 12 3 37 37 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3611 2.0361 -1.1937 5 6 2.8219 3.3394 -1.1991 6 6 2.9557 4.0319 -0.0064 7 8 3.4093 5.3139 -0.0098 8 6 3.7302 5.8851 -1.2798 9 6 2.6207 3.4140 1.1948 10 8 2.7458 4.0910 2.3675 11 6 4.0027 3.9959 3.0407 12 6 2.1638 2.1058 1.1934 13 6 1.8043 1.4320 2.4926 14 6 3.0188 0.7350 3.0498 15 1 3.9572 0.7763 2.5167 16 6 2.9335 0.0500 4.2433 17 7 3.9947 -0.5537 4.7323 18 14 1.3107 -0.0208 5.1657 19 1 0.5370 -1.2059 4.7160 20 1 1.5741 -0.1256 6.6234 21 1 0.5309 1.2127 4.8909 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.2577 1.4973 -2.1239 28 1 3.0776 3.8179 -2.1329 29 1 4.0785 6.9084 -1.1404 30 1 4.5140 5.2958 -1.7556 31 1 2.8424 5.8869 -1.9122 32 1 4.2079 2.9528 3.2813 33 1 4.7910 4.3815 2.3943 34 1 3.9677 4.5804 3.9600 35 1 1.0149 0.7013 2.3166 36 1 1.4555 2.1793 3.2052 37 1 3.9346 -1.0359 5.5717 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260053581.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:17 Heat of formation + Delta-G solvation = -62.841271 kcal Electronic energy + Delta-G solvation = -18997.656345 eV Core-core repulsion = 16126.502672 eV Total energy + Delta-G solvation = -2871.153673 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.09209 -37.86054 -36.84376 -33.46181 -32.61046 -31.00910 -28.99220 -27.51791 -26.97145 -25.76542 -23.31465 -22.73619 -20.72263 -19.85563 -17.44619 -16.81074 -16.43280 -16.33543 -15.57045 -14.53992 -14.39603 -14.21165 -14.08974 -13.64461 -13.36125 -12.83563 -12.53072 -12.47003 -12.15119 -11.69288 -11.62939 -11.54998 -11.30895 -10.92176 -10.67848 -10.63996 -10.44356 -10.22054 -9.96525 -9.93693 -9.35080 -9.10275 -8.57179 -7.85791 -7.48548 -6.08875 -4.06873 1.78104 1.93968 3.28926 3.37545 3.43316 3.56767 4.02872 4.42151 4.68061 5.09585 5.23381 5.24342 5.27732 5.37950 5.49578 5.56824 5.65020 5.82448 5.95187 6.02079 6.05172 6.10951 6.23167 6.27850 6.40591 6.54843 6.65716 6.69046 6.79534 6.82082 7.02633 7.12360 7.32568 7.48430 7.65111 7.69440 8.33402 8.47581 8.94306 9.51946 11.03408 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021266 B = 0.008616 C = 0.006820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.364860 B = 3248.986236 C = 4104.676259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.105 4.105 4 C -0.089 4.089 5 C -0.219 4.219 6 C 0.097 3.903 7 O -0.311 6.311 8 C 0.029 3.971 9 C 0.065 3.935 10 O -0.325 6.325 11 C 0.032 3.968 12 C -0.010 4.010 13 C 0.013 3.987 14 C -0.506 4.506 15 H 0.072 0.928 16 C 0.073 3.927 17 N -0.899 5.899 18 Si 0.871 3.129 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.262 1.262 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.047 0.953 25 H 0.060 0.940 26 H 0.094 0.906 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.093 0.907 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.030 0.970 34 H 0.080 0.920 35 H 0.032 0.968 36 H 0.036 0.964 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.979 7.154 -11.102 13.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 C -0.105 4.105 4 C -0.108 4.108 5 C -0.237 4.237 6 C 0.052 3.948 7 O -0.224 6.224 8 C -0.067 4.067 9 C 0.020 3.980 10 O -0.241 6.241 11 C -0.062 4.062 12 C -0.010 4.010 13 C -0.023 4.023 14 C -0.544 4.544 15 H 0.091 0.909 16 C -0.129 4.129 17 N -0.537 5.537 18 Si 0.698 3.302 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.187 1.187 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.113 0.887 27 H 0.136 0.864 28 H 0.139 0.861 29 H 0.112 0.888 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.009 7.292 -10.686 13.283 hybrid contribution -0.399 -0.143 0.126 0.442 sum -3.408 7.149 -10.561 13.200 Atomic orbital electron populations 1.21754 0.95737 1.01042 1.01651 1.20493 0.95288 0.92799 1.03464 1.19572 1.02413 0.96730 0.91806 1.20721 0.98731 0.93889 0.97422 1.20855 1.10049 0.96795 0.96041 1.19428 0.97045 0.84204 0.94120 1.86143 1.80222 1.25106 1.30978 1.22963 0.99888 0.98631 0.85201 1.17814 1.05418 0.91176 0.83555 1.85942 1.34991 1.69831 1.33376 1.23066 0.83884 1.03914 0.95328 1.20292 0.93327 0.90508 0.96885 1.18819 0.98086 0.95697 0.89747 1.20793 0.95710 1.31671 1.06208 0.90943 1.24930 0.96189 0.94823 0.96924 1.69890 1.28861 1.34422 1.20529 0.86897 0.84820 0.79264 0.79244 1.20120 1.21284 1.18652 0.92931 0.92352 0.93416 0.92148 0.88736 0.86428 0.86058 0.88826 0.93095 0.93107 0.90437 0.95110 0.90171 0.95004 0.94558 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.70 37.15 0.36 -1.85 16 2 C -0.08 -1.45 5.36 -27.89 -0.15 -1.60 16 3 C -0.10 -2.00 5.13 -104.62 -0.54 -2.54 16 4 C -0.09 -1.48 9.67 -39.57 -0.38 -1.86 16 5 C -0.22 -3.56 9.04 -39.46 -0.36 -3.92 16 6 C 0.10 1.84 6.70 -39.12 -0.26 1.57 16 7 O -0.31 -5.37 10.28 -34.21 -0.35 -5.72 16 8 C 0.03 0.33 9.81 101.05 0.99 1.32 16 9 C 0.06 1.40 5.71 -39.12 -0.22 1.18 16 10 O -0.32 -7.24 9.24 -34.21 -0.32 -7.55 16 11 C 0.03 0.65 11.13 101.05 1.13 1.78 16 12 C -0.01 -0.21 5.08 -104.50 -0.53 -0.74 16 13 C 0.01 0.32 3.28 -29.03 -0.10 0.23 16 14 C -0.51 -13.78 7.65 -34.44 -0.26 -14.04 16 15 H 0.07 2.17 7.93 -52.49 -0.42 1.75 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -26.69 13.96 55.43 0.77 -25.92 16 18 Si 0.87 21.18 27.47 -169.99 -4.67 16.51 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.96 6.90 -51.93 -0.36 0.61 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.91 8.05 -51.93 -0.42 0.49 16 26 H 0.09 1.91 6.63 -51.92 -0.34 1.56 16 27 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 28 H 0.12 1.58 6.30 -52.49 -0.33 1.25 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.53 7.66 -51.93 -0.40 0.14 16 31 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 32 H 0.08 1.78 6.42 -51.93 -0.33 1.44 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 35 H 0.03 0.74 4.85 -51.93 -0.25 0.49 16 36 H 0.04 0.92 6.57 -51.93 -0.34 0.58 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 301.50 15.07 4.54 4.54 Total: -1.00 -30.78 301.50 -5.74 -36.51 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -5.29 Total: 0.14 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -0.42 Total: -18.51 kcal Atomic # 7 Polarization: -26.69 SS G_CDS: 0.77 Total: -25.92 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.67 Total: -13.27 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.78 -5.74 -36.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260053581.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.330 kcal (2) G-P(sol) polarization free energy of solvation -30.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds