Wall clock time and date at job start Mon Mar 30 2020 05:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50695 * 109.47410 * 2 1 4 4 C 1.38258 * 119.92464 * 264.98146 * 3 2 1 5 5 C 1.38238 * 120.14728 * 179.97438 * 4 3 2 6 6 C 1.38564 * 120.00129 * 0.02562 * 5 4 3 7 7 O 1.35990 * 120.07764 * 179.97438 * 6 5 4 8 8 C 1.42904 * 116.99878 * 359.97438 * 7 6 5 9 9 C 1.39166 * 119.85170 * 359.76875 * 6 5 4 10 10 O 1.35990 * 120.07224 * 180.23080 * 9 6 5 11 11 C 1.42902 * 117.00247 * 270.22910 * 10 9 6 12 12 C 1.38233 * 119.93054 * 84.99920 * 3 2 1 13 13 C 1.50700 * 119.99980 * 359.97438 * 12 3 2 14 14 C 1.50702 * 109.46869 * 90.00014 * 13 12 3 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99985 * 180.27663 * 16 14 13 18 18 Si 1.86800 * 119.99777 * 0.28166 * 16 14 13 19 19 H 1.48498 * 109.47109 * 89.99834 * 18 16 14 20 20 H 1.48507 * 109.46754 * 209.99574 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99405 * 18 16 14 22 22 H 1.09005 * 109.47517 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46944 * 300.00069 * 1 2 3 24 24 H 1.09000 * 109.47254 * 60.00407 * 1 2 3 25 25 H 1.09001 * 109.47219 * 239.99465 * 2 1 3 26 26 H 1.09008 * 109.47193 * 120.00206 * 2 1 3 27 27 H 1.07997 * 119.92717 * 359.97438 * 4 3 2 28 28 H 1.08000 * 120.00080 * 180.02562 * 5 4 3 29 29 H 1.08998 * 109.47098 * 179.97438 * 8 7 6 30 30 H 1.08992 * 109.46706 * 299.99770 * 8 7 6 31 31 H 1.09000 * 109.47056 * 60.00202 * 8 7 6 32 32 H 1.08998 * 109.46987 * 300.00272 * 11 10 9 33 33 H 1.08994 * 109.46614 * 59.99977 * 11 10 9 34 34 H 1.08998 * 109.47184 * 180.02562 * 11 10 9 35 35 H 1.09004 * 109.47210 * 330.00307 * 13 12 3 36 36 H 1.08994 * 109.47551 * 209.99960 * 13 12 3 37 37 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3611 2.0361 -1.1937 5 6 2.8219 3.3394 -1.1991 6 6 2.9557 4.0319 -0.0064 7 8 3.4093 5.3139 -0.0098 8 6 3.7302 5.8851 -1.2798 9 6 2.6207 3.4140 1.1948 10 8 2.7458 4.0910 2.3675 11 6 4.0027 3.9959 3.0407 12 6 2.1638 2.1058 1.1934 13 6 1.8043 1.4320 2.4926 14 6 3.0188 0.7350 3.0498 15 1 3.9572 0.7763 2.5167 16 6 2.9335 0.0500 4.2433 17 7 3.9947 -0.5537 4.7323 18 14 1.3107 -0.0208 5.1657 19 1 0.5370 -1.2059 4.7160 20 1 1.5741 -0.1256 6.6234 21 1 0.5309 1.2127 4.8909 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.2577 1.4973 -2.1239 28 1 3.0776 3.8179 -2.1329 29 1 4.0785 6.9084 -1.1404 30 1 4.5140 5.2958 -1.7556 31 1 2.8424 5.8869 -1.9122 32 1 4.2079 2.9528 3.2813 33 1 4.7910 4.3815 2.3943 34 1 3.9677 4.5804 3.9600 35 1 1.0149 0.7013 2.3166 36 1 1.4555 2.1793 3.2052 37 1 3.9346 -1.0359 5.5717 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260053581.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:16 Heat of formation + Delta-G solvation = -81.645922 kcal Electronic energy + Delta-G solvation = -18998.471776 eV Core-core repulsion = 16126.502672 eV Total energy + Delta-G solvation = -2871.969104 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.50424 -39.21210 -38.37644 -35.30005 -34.16645 -32.76680 -30.37562 -29.15146 -28.12396 -27.34595 -24.95398 -24.25002 -22.28036 -21.28944 -18.97735 -18.82289 -17.91307 -17.76539 -16.84495 -16.32429 -15.96631 -15.57312 -15.49431 -15.06697 -15.06256 -14.31365 -14.14061 -13.92361 -13.52944 -13.42383 -13.20070 -12.81364 -12.66033 -12.47808 -12.37909 -12.13644 -11.93788 -11.72305 -11.68005 -11.45894 -11.39289 -10.76844 -10.69190 -9.41303 -8.86724 -8.27614 -6.28993 0.33479 0.50827 1.33520 1.36874 1.48577 2.35737 2.39559 2.57999 3.06976 3.18112 3.94154 4.00447 4.18037 4.29908 4.40797 4.42923 4.45161 4.48313 4.61123 4.63415 4.67380 4.73083 4.78735 4.87642 4.95122 5.02639 5.17278 5.17485 5.32506 5.34135 5.46441 5.52540 5.61861 5.88760 5.90760 6.27413 6.32733 6.71796 6.81416 7.32268 8.88163 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021266 B = 0.008616 C = 0.006820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.364860 B = 3248.986236 C = 4104.676259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.082 4.082 3 C -0.117 4.117 4 C -0.079 4.079 5 C -0.205 4.205 6 C 0.093 3.907 7 O -0.334 6.334 8 C 0.017 3.983 9 C 0.029 3.971 10 O -0.342 6.342 11 C 0.039 3.961 12 C -0.045 4.045 13 C 0.027 3.973 14 C -0.495 4.495 15 H 0.030 0.970 16 C 0.019 3.981 17 N -0.943 5.943 18 Si 0.932 3.068 19 H -0.260 1.260 20 H -0.283 1.283 21 H -0.256 1.256 22 H 0.069 0.931 23 H 0.037 0.963 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.055 0.945 27 H 0.160 0.840 28 H 0.164 0.836 29 H 0.117 0.883 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.102 0.898 35 H 0.039 0.961 36 H 0.017 0.983 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.216 7.937 -13.800 16.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.120 4.120 3 C -0.118 4.118 4 C -0.097 4.097 5 C -0.223 4.223 6 C 0.047 3.953 7 O -0.248 6.248 8 C -0.077 4.077 9 C -0.015 4.015 10 O -0.259 6.259 11 C -0.055 4.055 12 C -0.046 4.046 13 C -0.010 4.010 14 C -0.533 4.533 15 H 0.048 0.952 16 C -0.179 4.179 17 N -0.584 5.584 18 Si 0.756 3.244 19 H -0.185 1.185 20 H -0.209 1.209 21 H -0.180 1.180 22 H 0.088 0.912 23 H 0.057 0.943 24 H 0.088 0.912 25 H 0.106 0.894 26 H 0.074 0.926 27 H 0.177 0.823 28 H 0.181 0.819 29 H 0.135 0.865 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.121 0.879 35 H 0.057 0.943 36 H 0.036 0.964 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.252 8.087 -13.406 16.223 hybrid contribution 0.098 -0.287 0.809 0.863 sum -4.154 7.800 -12.598 15.388 Atomic orbital electron populations 1.21723 0.94037 1.02222 1.01727 1.20490 0.96790 0.91788 1.02892 1.19844 1.02635 0.97394 0.91900 1.21156 0.96629 0.94060 0.97844 1.21327 1.07823 0.96519 0.96624 1.19471 0.96745 0.85168 0.93888 1.86111 1.79969 1.24271 1.34431 1.23362 1.01184 0.99736 0.83411 1.18148 1.07265 0.91738 0.84327 1.85901 1.35648 1.70064 1.34324 1.22999 0.84103 1.01879 0.96545 1.20223 0.96099 0.91407 0.96847 1.18551 0.96548 0.95013 0.90924 1.20843 0.95379 1.31246 1.05797 0.95159 1.25727 0.99639 0.94612 0.97909 1.70026 1.31144 1.35944 1.21299 0.85914 0.80682 0.79885 0.77886 1.18518 1.20870 1.18048 0.91218 0.94345 0.91203 0.89371 0.92599 0.82279 0.81903 0.86500 0.91715 0.91305 0.94234 0.93957 0.87923 0.94275 0.96446 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 9.70 71.98 0.70 -3.29 16 2 C -0.08 -2.76 5.36 29.84 0.16 -2.60 16 3 C -0.12 -4.35 5.13 -19.86 -0.10 -4.45 16 4 C -0.08 -2.33 9.67 22.27 0.22 -2.11 16 5 C -0.20 -5.91 9.04 22.35 0.20 -5.71 16 6 C 0.09 3.37 6.70 22.57 0.15 3.52 16 7 O -0.33 -10.90 10.28 -79.57 -0.82 -11.72 16 8 C 0.02 0.33 9.81 113.37 1.11 1.45 16 9 C 0.03 1.28 5.71 22.57 0.13 1.41 16 10 O -0.34 -15.74 9.24 -79.57 -0.74 -16.47 16 11 C 0.04 1.64 11.13 113.37 1.26 2.90 16 12 C -0.05 -2.02 5.08 -19.79 -0.10 -2.12 16 13 C 0.03 1.33 3.28 29.10 0.10 1.43 16 14 C -0.49 -28.40 7.65 25.60 0.20 -28.20 16 15 H 0.03 1.94 7.93 -2.91 -0.02 1.92 16 16 C 0.02 1.08 5.47 84.66 0.46 1.54 16 17 N -0.94 -58.39 13.96 21.45 0.30 -58.09 16 18 Si 0.93 44.69 27.47 68.60 1.88 46.57 16 19 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.26 -11.95 6.54 99.48 0.65 -11.30 16 22 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 23 H 0.04 1.23 6.90 -2.39 -0.02 1.21 16 24 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.09 2.41 8.05 -2.39 -0.02 2.39 16 26 H 0.06 2.29 6.63 -2.38 -0.02 2.28 16 27 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 28 H 0.16 3.30 6.30 -2.91 -0.02 3.28 16 29 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.09 7.66 -2.39 -0.02 1.07 16 31 H 0.07 1.11 7.66 -2.39 -0.02 1.09 16 32 H 0.04 1.94 6.42 -2.39 -0.02 1.92 16 33 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 35 H 0.04 1.86 4.85 -2.38 -0.01 1.85 16 36 H 0.02 0.91 6.57 -2.39 -0.02 0.90 16 37 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -70.79 301.50 6.11 -64.67 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 1.00 Total: 11.27 kcal Atomic # 6 Polarization: -40.72 SS G_CDS: 4.48 Total: -36.23 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: 0.30 Total: -58.09 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -1.55 Total: -28.19 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Total: -70.79 6.11 -64.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260053581.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.973 kcal (2) G-P(sol) polarization free energy of solvation -70.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds