Wall clock time and date at job start Mon Mar 30 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47079 * 2 1 4 4 C 1.38251 * 119.92678 * 90.00003 * 3 2 1 5 5 C 1.38245 * 120.14567 * 179.97438 * 4 3 2 6 6 C 1.50704 * 120.00027 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.46799 * 99.97470 * 6 5 4 8 8 C 1.50704 * 109.46799 * 180.02562 * 7 6 5 9 9 H 1.07991 * 120.00082 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00004 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00372 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 119.99839 * 0.02562 * 10 8 7 13 13 H 1.48506 * 109.47034 * 90.00006 * 12 10 8 14 14 H 1.48503 * 109.46991 * 209.99859 * 12 10 8 15 15 H 1.48503 * 109.47204 * 329.99881 * 12 10 8 16 16 C 1.38563 * 119.99834 * 359.97438 * 5 4 3 17 17 O 1.35995 * 120.07067 * 180.02562 * 16 5 4 18 18 C 1.39149 * 119.85691 * 0.28262 * 16 5 4 19 19 O 1.35993 * 120.07726 * 179.72215 * 18 16 5 20 20 C 1.42896 * 117.00235 * 179.97438 * 19 18 16 21 21 C 1.38242 * 119.92428 * 269.98032 * 3 2 1 22 22 H 1.08997 * 109.47102 * 299.99569 * 1 2 3 23 23 H 1.08991 * 109.47230 * 60.00386 * 1 2 3 24 24 H 1.09004 * 109.46774 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47059 * 239.99953 * 2 1 3 26 26 H 1.09007 * 109.47542 * 119.99781 * 2 1 3 27 27 H 1.07996 * 119.92962 * 359.97438 * 4 3 2 28 28 H 1.08995 * 109.46820 * 219.97491 * 6 5 4 29 29 H 1.08997 * 109.46806 * 339.97619 * 6 5 4 30 30 H 1.09004 * 109.47331 * 299.99654 * 7 6 5 31 31 H 1.08993 * 109.47455 * 59.99974 * 7 6 5 32 32 H 0.96989 * 120.00117 * 180.02562 * 11 10 8 33 33 H 0.96700 * 114.00111 * 90.00426 * 17 16 5 34 34 H 1.08998 * 109.47248 * 300.00059 * 20 19 18 35 35 H 1.09002 * 109.47231 * 60.00065 * 20 19 18 36 36 H 1.09004 * 109.47481 * 179.97438 * 20 19 18 37 37 H 1.07999 * 120.00345 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2623 2.0711 1.1982 5 6 2.7236 3.3743 1.2035 6 6 2.9736 4.0799 2.5115 7 6 4.4699 4.0489 2.8296 8 6 4.7198 4.7539 4.1379 9 1 3.8943 5.1816 4.6872 10 6 6.0026 4.8529 4.6336 11 7 6.2209 5.4686 5.7750 12 14 7.4308 4.1138 3.6830 13 1 7.9802 5.1277 2.7473 14 1 8.4913 3.6906 4.6326 15 1 6.9564 2.9356 2.9136 16 6 2.9570 4.0314 0.0061 17 8 3.4113 5.3133 0.0096 18 6 2.7205 3.3788 -1.1999 19 8 2.9428 4.0214 -2.3776 20 6 2.6788 3.2892 -3.5760 21 6 2.2626 2.0709 -1.1981 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8935 -0.5138 0.8900 27 1 2.0811 1.5600 2.1321 28 1 2.6395 5.1146 2.4357 29 1 2.4227 3.5773 3.3064 30 1 4.8040 3.0141 2.9053 31 1 5.0208 4.5514 2.0347 32 1 7.1234 5.5385 6.1235 33 1 4.3754 5.3889 0.0109 34 1 3.3081 2.3997 -3.6045 35 1 1.6300 2.9931 -3.5974 36 1 2.8964 3.9165 -4.4405 37 1 2.0821 1.5607 -2.1327 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260082071.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:46 Heat of formation + Delta-G solvation = -100.936423 kcal Electronic energy + Delta-G solvation = -18226.706845 eV Core-core repulsion = 15353.901242 eV Total energy + Delta-G solvation = -2872.805603 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.51208 -39.08952 -37.96426 -35.98962 -34.48841 -33.25107 -30.80549 -29.78040 -28.13117 -26.87711 -24.63684 -23.30021 -22.48039 -21.17287 -19.32977 -18.94336 -18.09888 -17.74016 -16.89379 -16.35606 -16.12717 -15.48274 -15.25917 -14.94815 -14.85756 -14.56050 -14.33573 -14.02047 -13.75390 -13.19496 -13.18099 -12.88685 -12.81176 -12.53686 -12.25221 -12.00082 -11.88137 -11.76687 -11.62146 -11.54940 -11.44665 -11.16285 -10.77149 -9.48300 -9.03496 -8.29905 -6.34330 0.23004 0.40510 1.34543 1.36405 1.48539 2.31967 2.35194 2.60212 3.05080 3.35368 3.75523 3.80560 4.15978 4.29372 4.33703 4.36336 4.39774 4.45043 4.54200 4.61821 4.69686 4.71844 4.77170 4.85947 5.03551 5.09730 5.11150 5.21559 5.33018 5.40848 5.42906 5.58136 5.61188 5.71625 5.80203 6.27134 6.33327 6.72687 6.87458 7.29988 8.87109 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021955 B = 0.006048 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.007922 B = 4628.468346 C = 5262.029614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.047 4.047 4 C -0.150 4.150 5 C -0.069 4.069 6 C -0.056 4.056 7 C 0.006 3.994 8 C -0.532 4.532 9 H 0.032 0.968 10 C 0.007 3.993 11 N -0.951 5.951 12 Si 0.949 3.051 13 H -0.264 1.264 14 H -0.282 1.282 15 H -0.249 1.249 16 C 0.043 3.957 17 O -0.499 6.499 18 C 0.098 3.902 19 O -0.332 6.332 20 C 0.016 3.984 21 C -0.198 4.198 22 H 0.046 0.954 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.133 0.867 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.019 0.981 31 H 0.016 0.984 32 H 0.267 0.733 33 H 0.392 0.608 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.357 -12.607 -19.897 24.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.047 4.047 4 C -0.168 4.168 5 C -0.069 4.069 6 C -0.094 4.094 7 C -0.031 4.031 8 C -0.570 4.570 9 H 0.050 0.950 10 C -0.190 4.190 11 N -0.591 5.591 12 Si 0.772 3.228 13 H -0.189 1.189 14 H -0.207 1.207 15 H -0.173 1.173 16 C -0.003 4.003 17 O -0.309 6.309 18 C 0.052 3.948 19 O -0.245 6.245 20 C -0.078 4.078 21 C -0.217 4.217 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.095 0.905 25 H 0.109 0.891 26 H 0.097 0.903 27 H 0.151 0.849 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.037 0.963 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.248 0.752 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.135 0.865 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.764 -12.216 -19.827 24.883 hybrid contribution 1.208 0.178 0.293 1.255 sum -7.556 -12.039 -19.534 24.158 Atomic orbital electron populations 1.21734 0.93825 1.02681 1.01908 1.20617 0.96772 0.90349 1.04139 1.20001 0.95927 0.97329 0.91482 1.20982 1.03266 0.93462 0.99109 1.20310 0.97664 0.94804 0.94168 1.20288 0.97707 0.99135 0.92256 1.19353 0.93133 0.96040 0.94584 1.21444 0.93707 1.35806 1.06039 0.94985 1.25982 1.02046 0.95206 0.95752 1.70063 1.22409 1.44995 1.21664 0.85674 0.78232 0.80053 0.78803 1.18919 1.20750 1.17264 1.17824 1.06751 0.85755 0.89935 1.84786 1.27694 1.22236 1.96201 1.19468 0.98036 0.91866 0.85415 1.86121 1.83006 1.42397 1.13024 1.23380 1.01862 0.98355 0.84165 1.21209 1.07157 0.93215 1.00108 0.93438 0.92525 0.90532 0.89138 0.90285 0.84914 0.92610 0.91640 0.96302 0.96530 0.92420 0.75179 0.91395 0.91533 0.86466 0.82305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.90 71.98 0.71 -1.46 16 2 C -0.08 -1.39 6.06 29.85 0.18 -1.21 16 3 C -0.05 -1.16 5.13 -19.86 -0.10 -1.26 16 4 C -0.15 -4.59 9.31 22.27 0.21 -4.39 16 5 C -0.07 -2.52 5.15 -19.78 -0.10 -2.63 16 6 C -0.06 -2.41 4.95 29.85 0.15 -2.27 16 7 C 0.01 0.30 4.02 29.85 0.12 0.42 16 8 C -0.53 -31.56 9.66 25.60 0.25 -31.31 16 9 H 0.03 2.09 7.99 -2.92 -0.02 2.07 16 10 C 0.01 0.41 5.47 84.65 0.46 0.88 16 11 N -0.95 -60.61 13.96 21.45 0.30 -60.31 16 12 Si 0.95 44.87 27.47 68.60 1.88 46.75 16 13 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 14 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 15 H -0.25 -11.02 6.54 99.48 0.65 -10.36 16 16 C 0.04 1.53 6.69 22.57 0.15 1.68 16 17 O -0.50 -18.68 12.44 -79.63 -0.99 -19.67 16 18 C 0.10 2.96 6.70 22.57 0.15 3.11 16 19 O -0.33 -9.15 10.28 -79.61 -0.82 -9.97 16 20 C 0.02 0.26 9.81 113.37 1.11 1.37 16 21 C -0.20 -4.77 8.69 22.35 0.19 -4.58 16 22 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 25 H 0.09 1.18 8.08 -2.39 -0.02 1.16 16 26 H 0.08 1.31 8.08 -2.38 -0.02 1.29 16 27 H 0.13 3.78 8.03 -2.91 -0.02 3.75 16 28 H 0.06 2.53 7.85 -2.39 -0.02 2.51 16 29 H 0.06 2.73 8.00 -2.39 -0.02 2.71 16 30 H 0.02 0.90 7.20 -2.38 -0.02 0.88 16 31 H 0.02 0.77 7.06 -2.39 -0.02 0.76 16 32 H 0.27 15.80 8.31 -92.72 -0.77 15.03 16 33 H 0.39 12.47 8.63 -74.06 -0.64 11.83 16 34 H 0.07 0.87 7.65 -2.39 -0.02 0.85 16 35 H 0.07 0.87 7.67 -2.39 -0.02 0.85 16 36 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.16 2.66 6.30 -2.91 -0.02 2.64 16 Total: -1.00 -72.79 309.88 4.22 -68.57 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.37 Total: 16.25 kcal Atomic # 6 Polarization: -45.12 SS G_CDS: 3.48 Total: -41.63 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 0.30 Total: -60.31 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -1.81 Total: -29.63 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.75 kcal Total: -72.79 4.22 -68.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260082071.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.367 kcal (2) G-P(sol) polarization free energy of solvation -72.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds