Wall clock time and date at job start Mon Mar 30 2020 05:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50705 * 109.47042 * 2 1 4 4 C 1.38193 * 119.97103 * 100.02423 * 3 2 1 5 5 C 1.38147 * 120.11246 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.97747 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47594 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47320 * 59.99787 * 6 5 4 9 9 C 1.50712 * 109.46660 * 299.99771 * 6 5 4 10 10 H 1.07997 * 119.99755 * 0.02562 * 9 6 5 11 11 C 1.37877 * 119.99606 * 179.97438 * 9 6 5 12 12 N 1.31517 * 120.00335 * 0.02562 * 11 9 6 13 13 Si 1.86799 * 119.99723 * 180.02562 * 11 9 6 14 14 H 1.48499 * 109.47109 * 60.00096 * 13 11 9 15 15 H 1.48505 * 109.47061 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47352 * 299.99723 * 13 11 9 17 17 C 1.38798 * 120.05309 * 0.02562 * 5 4 3 18 18 O 1.35898 * 120.02703 * 180.02562 * 17 5 4 19 19 C 1.38612 * 119.94432 * 359.74307 * 17 5 4 20 20 C 1.38652 * 119.88818 * 0.48672 * 19 17 5 21 21 O 1.35901 * 120.02737 * 179.79373 * 20 19 17 22 22 C 1.42903 * 116.99879 * 359.71896 * 21 20 19 23 23 H 1.08994 * 109.46937 * 59.99814 * 1 2 3 24 24 H 1.09004 * 109.46991 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46636 * 299.99487 * 1 2 3 26 26 H 1.09006 * 109.47073 * 240.00576 * 2 1 3 27 27 H 1.08994 * 109.47601 * 120.00538 * 2 1 3 28 28 H 1.08007 * 119.94488 * 359.97438 * 4 3 2 29 29 H 1.08996 * 109.47270 * 180.02562 * 8 6 5 30 30 H 1.09005 * 109.47172 * 300.00471 * 8 6 5 31 31 H 1.08992 * 109.47192 * 60.00244 * 8 6 5 32 32 H 0.97000 * 119.99882 * 180.02562 * 12 11 9 33 33 H 0.96705 * 114.00052 * 89.99923 * 18 17 5 34 34 H 1.08002 * 120.05499 * 180.25680 * 19 17 5 35 35 H 1.09002 * 109.47382 * 300.00322 * 22 21 20 36 36 H 1.09001 * 109.46938 * 180.02562 * 22 21 20 37 37 H 1.09004 * 109.46926 * 60.00429 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.4589 2.0023 1.1789 5 6 2.9205 3.3044 1.1821 6 6 3.3855 3.9352 2.4693 7 1 3.7106 4.9575 2.2763 8 6 4.5525 3.1276 3.0406 9 6 2.2505 3.9484 3.4609 10 1 1.2890 3.5403 3.1865 11 6 2.4402 4.4804 4.7187 12 7 3.6113 4.9768 5.0530 13 14 1.0338 4.4960 5.9479 14 1 0.5905 3.1033 6.2106 15 1 1.4923 5.1167 7.2168 16 1 -0.0992 5.2800 5.3940 17 6 2.9563 4.0321 0.0008 18 8 3.4109 5.3128 0.0045 19 6 2.5335 3.4496 -1.1838 20 6 2.0662 2.1442 -1.1835 21 8 1.6470 1.5717 -2.3426 22 6 1.7098 2.3751 -3.5228 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5137 0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.4315 1.4378 2.0992 29 1 4.8885 3.5837 3.9719 30 1 4.2270 2.1054 3.2338 31 1 5.3733 3.1181 2.3235 32 1 3.7448 5.3508 5.9380 33 1 4.3624 5.3929 -0.1486 34 1 2.5644 4.0129 -2.1048 35 1 1.0887 3.2613 -3.3925 36 1 1.3465 1.7992 -4.3740 37 1 2.7415 2.6776 -3.7019 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260094820.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:56 Heat of formation + Delta-G solvation = -94.490543 kcal Electronic energy + Delta-G solvation = -18665.709617 eV Core-core repulsion = 15793.183528 eV Total energy + Delta-G solvation = -2872.526089 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.40014 -39.38359 -37.50740 -36.14814 -34.21867 -32.87762 -30.05492 -29.44511 -27.81373 -27.17196 -24.54181 -24.01563 -22.39727 -20.89288 -19.70513 -18.36822 -17.75077 -17.23475 -16.79637 -16.62238 -15.79724 -15.62561 -15.02809 -14.96687 -14.60625 -14.43327 -13.99393 -13.64495 -13.47233 -13.13131 -12.88012 -12.83247 -12.67419 -12.52681 -12.32034 -12.12035 -12.04953 -11.72660 -11.62759 -11.52762 -11.01861 -10.89742 -10.42665 -9.56855 -8.75409 -8.07150 -6.20588 0.35103 0.58494 1.40938 1.42190 1.49861 2.42501 2.43794 2.77538 3.19759 3.40884 3.91512 3.99915 4.20765 4.32939 4.42919 4.45243 4.57544 4.59316 4.71478 4.75887 4.81013 4.93870 5.02445 5.07716 5.09957 5.16135 5.30330 5.35386 5.44423 5.53924 5.59683 5.71305 5.88226 6.08846 6.10673 6.38633 6.48031 6.87242 6.94424 7.46103 8.96439 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023743 B = 0.006867 C = 0.005978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.029129 B = 4076.377177 C = 4682.625504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.068 4.068 3 C -0.129 4.129 4 C -0.069 4.069 5 C -0.118 4.118 6 C 0.079 3.921 7 H 0.012 0.988 8 C -0.120 4.120 9 C -0.520 4.520 10 H 0.045 0.955 11 C 0.015 3.985 12 N -0.916 5.916 13 Si 0.950 3.050 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.277 1.277 17 C 0.112 3.888 18 O -0.505 6.505 19 C -0.230 4.230 20 C 0.123 3.877 21 O -0.320 6.320 22 C 0.018 3.982 23 H 0.051 0.949 24 H 0.075 0.925 25 H 0.040 0.960 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.122 0.878 29 H 0.058 0.942 30 H 0.031 0.969 31 H 0.025 0.975 32 H 0.261 0.739 33 H 0.400 0.600 34 H 0.150 0.850 35 H 0.055 0.945 36 H 0.124 0.876 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.991 -7.535 -14.684 16.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 C -0.130 4.130 4 C -0.087 4.087 5 C -0.118 4.118 6 C 0.061 3.939 7 H 0.030 0.970 8 C -0.178 4.178 9 C -0.558 4.558 10 H 0.064 0.936 11 C -0.184 4.184 12 N -0.555 5.555 13 Si 0.776 3.224 14 H -0.194 1.194 15 H -0.206 1.206 16 H -0.203 1.203 17 C 0.068 3.932 18 O -0.317 6.317 19 C -0.249 4.249 20 C 0.077 3.923 21 O -0.234 6.234 22 C -0.076 4.076 23 H 0.070 0.930 24 H 0.094 0.906 25 H 0.059 0.941 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.140 0.860 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.257 0.743 34 H 0.168 0.832 35 H 0.073 0.927 36 H 0.143 0.857 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.556 -7.499 -14.473 16.500 hybrid contribution 0.091 0.741 0.819 1.108 sum -2.465 -6.758 -13.654 15.433 Atomic orbital electron populations 1.21672 0.94513 1.02267 1.01229 1.20338 0.96439 0.90737 1.02977 1.19492 1.04780 0.98372 0.90324 1.20662 0.96911 0.94163 0.96941 1.20726 1.00628 0.94508 0.95964 1.17545 0.93909 0.93921 0.88572 0.97009 1.21631 0.96920 0.98496 1.00782 1.21358 0.97119 1.39279 0.98057 0.93626 1.25674 0.97886 0.94958 0.99857 1.69996 1.23658 1.40889 1.21003 0.85731 0.79732 0.78593 0.78344 1.19363 1.20617 1.20299 1.18228 0.99276 0.83955 0.91787 1.84762 1.29642 1.22671 1.94640 1.21451 1.09189 0.95441 0.98828 1.18486 0.96391 0.90942 0.86442 1.86032 1.80578 1.41902 1.14900 1.23312 1.02402 0.96739 0.85184 0.92992 0.90570 0.94098 0.90100 0.90835 0.85964 0.92279 0.95024 0.95603 0.92966 0.74264 0.83240 0.92670 0.85742 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.89 71.98 0.71 -2.83 16 2 C -0.07 -1.86 5.73 29.85 0.17 -1.69 16 3 C -0.13 -4.42 5.15 -19.75 -0.10 -4.52 16 4 C -0.07 -2.78 8.32 22.24 0.18 -2.59 16 5 C -0.12 -5.26 4.75 -19.75 -0.09 -5.36 16 6 C 0.08 4.11 2.44 -12.28 -0.03 4.08 16 7 H 0.01 0.67 6.99 -2.39 -0.02 0.66 16 8 C -0.12 -5.92 8.78 71.98 0.63 -5.29 16 9 C -0.52 -29.60 8.24 25.60 0.21 -29.39 16 10 H 0.05 2.61 7.60 -2.91 -0.02 2.59 16 11 C 0.01 0.83 5.30 84.65 0.45 1.28 16 12 N -0.92 -53.57 11.32 21.45 0.24 -53.33 16 13 Si 0.95 44.71 29.54 68.60 2.03 46.73 16 14 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 15 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 16 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 17 C 0.11 4.47 6.67 22.49 0.15 4.62 16 18 O -0.51 -19.40 12.26 -92.41 -1.13 -20.54 16 19 C -0.23 -7.63 8.97 22.46 0.20 -7.42 16 20 C 0.12 3.95 6.65 22.49 0.15 4.10 16 21 O -0.32 -8.50 9.62 -92.44 -0.89 -9.39 16 22 C 0.02 0.32 9.81 113.37 1.11 1.43 16 23 H 0.05 1.34 8.04 -2.39 -0.02 1.32 16 24 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.08 2.01 7.85 -2.38 -0.02 1.99 16 27 H 0.07 1.91 8.00 -2.39 -0.02 1.89 16 28 H 0.12 5.05 7.54 -2.91 -0.02 5.03 16 29 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 30 H 0.03 1.47 7.39 -2.38 -0.02 1.45 16 31 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 33 H 0.40 11.34 9.06 -74.05 -0.67 10.67 16 34 H 0.15 4.03 6.30 -2.91 -0.02 4.02 16 35 H 0.05 0.97 7.67 -2.39 -0.02 0.95 16 36 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 0.99 7.65 -2.38 -0.02 0.97 16 Total: -1.00 -66.68 305.82 4.39 -62.29 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.40 Total: 17.81 kcal Atomic # 6 Polarization: -47.32 SS G_CDS: 3.75 Total: -43.58 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.24 Total: -53.33 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -2.02 Total: -29.93 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -66.68 4.39 -62.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260094820.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.198 kcal (2) G-P(sol) polarization free energy of solvation -66.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds