Wall clock time and date at job start Mon Mar 30 2020 05:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47119 * 2 1 4 4 C 1.38203 * 119.97505 * 100.25081 * 3 2 1 5 5 C 1.38160 * 120.10742 * 180.25036 * 4 3 2 6 6 C 1.50698 * 119.96822 * 179.77009 * 5 4 3 7 7 H 1.09004 * 109.46968 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47241 * 299.97807 * 6 5 4 9 9 C 1.50697 * 109.47411 * 59.98209 * 6 5 4 10 10 H 1.08006 * 119.99828 * 359.97438 * 9 6 5 11 11 C 1.37871 * 120.00264 * 179.97438 * 9 6 5 12 12 N 1.31523 * 119.99706 * 0.02562 * 11 9 6 13 13 Si 1.86799 * 120.00293 * 179.97438 * 11 9 6 14 14 H 1.48497 * 109.46903 * 60.00293 * 13 11 9 15 15 H 1.48503 * 109.47192 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47069 * 300.00149 * 13 11 9 17 17 C 1.38794 * 120.05298 * 359.74955 * 5 4 3 18 18 O 1.35897 * 120.02435 * 179.97438 * 17 5 4 19 19 C 1.38611 * 119.94641 * 0.02562 * 17 5 4 20 20 C 1.38645 * 119.89159 * 359.97438 * 19 17 5 21 21 O 1.35901 * 120.02742 * 179.97438 * 20 19 17 22 22 C 1.42903 * 116.99879 * 359.97438 * 21 20 19 23 23 H 1.08997 * 109.46927 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46816 * 300.00271 * 1 2 3 25 25 H 1.08998 * 109.47027 * 59.99939 * 1 2 3 26 26 H 1.08999 * 109.47239 * 239.99642 * 2 1 3 27 27 H 1.09001 * 109.46984 * 119.99285 * 2 1 3 28 28 H 1.07996 * 119.94296 * 0.02562 * 4 3 2 29 29 H 1.08999 * 109.47018 * 60.00241 * 8 6 5 30 30 H 1.08997 * 109.47374 * 179.97438 * 8 6 5 31 31 H 1.09003 * 109.47553 * 300.00179 * 8 6 5 32 32 H 0.97005 * 119.99704 * 180.02562 * 12 11 9 33 33 H 0.96706 * 114.00026 * 270.02851 * 18 17 5 34 34 H 1.07998 * 120.05044 * 180.02562 * 19 17 5 35 35 H 1.09002 * 109.47382 * 300.00322 * 22 21 20 36 36 H 1.09001 * 109.46938 * 180.02562 * 22 21 20 37 37 H 1.09004 * 109.46926 * 60.00429 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4634 2.0008 1.1781 5 6 2.9196 3.3049 1.1821 6 6 3.3840 3.9359 2.4694 7 1 3.7055 4.9595 2.2770 8 6 2.2333 3.9437 3.4778 9 6 4.5374 3.1442 3.0296 10 1 4.8979 2.2710 2.5059 11 6 5.1326 3.5344 4.2104 12 7 4.6933 4.5974 4.8483 13 14 6.5619 2.5526 4.9051 14 1 7.6786 2.5441 3.9263 15 1 7.0195 3.1745 6.1736 16 1 6.1233 1.1584 5.1680 17 6 2.9509 4.0340 0.0016 18 8 3.3993 5.3169 0.0063 19 6 2.5235 3.4530 -1.1821 20 6 2.0662 2.1441 -1.1836 21 8 1.6460 1.5719 -2.3424 22 6 1.7025 2.3774 -3.5215 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5137 0.8901 28 1 2.4401 1.4349 2.0976 29 1 1.9119 2.9201 3.6702 30 1 2.5693 4.3997 4.4090 31 1 1.3990 4.5164 3.0727 32 1 5.1122 4.8721 5.6789 33 1 2.7080 5.9746 0.1633 34 1 2.5476 4.0186 -2.1018 35 1 1.0785 3.2611 -3.3881 36 1 1.3391 1.8015 -4.3726 37 1 2.7326 2.6840 -3.7030 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260094826.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:59 Heat of formation + Delta-G solvation = -75.187146 kcal Electronic energy + Delta-G solvation = -18651.054488 eV Core-core repulsion = 15779.365458 eV Total energy + Delta-G solvation = -2871.689031 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.03553 -38.03361 -36.09440 -34.36268 -32.78919 -31.04667 -28.64566 -28.15488 -26.57936 -25.07644 -23.28610 -22.43086 -20.95212 -19.24326 -18.34180 -16.63592 -16.31681 -15.68824 -15.48588 -14.93082 -14.33936 -14.15042 -13.73822 -13.63116 -13.26893 -12.85459 -12.60528 -12.04160 -11.83570 -11.62125 -11.55865 -11.41121 -11.01698 -10.89441 -10.67083 -10.56678 -10.51433 -10.27804 -10.05649 -9.94127 -9.27791 -8.92312 -8.31527 -8.12751 -7.28188 -5.96598 -4.02288 1.78928 2.05617 3.34581 3.38540 3.42203 3.55235 4.19939 4.48126 4.79922 5.14340 5.19509 5.22726 5.27566 5.34713 5.45552 5.54426 5.69603 5.79022 5.94128 6.00536 6.11570 6.23956 6.32775 6.44096 6.57374 6.71729 6.85335 6.89557 7.15953 7.18528 7.27173 7.40073 7.71287 7.75979 8.02236 8.11010 8.29475 8.44760 8.99506 9.61385 11.09167 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024455 B = 0.006604 C = 0.005973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.692005 B = 4238.674185 C = 4686.547933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.070 4.070 3 C -0.125 4.125 4 C -0.060 4.060 5 C -0.083 4.083 6 C 0.075 3.925 7 H 0.044 0.956 8 C -0.132 4.132 9 C -0.503 4.503 10 H 0.055 0.945 11 C 0.062 3.938 12 N -0.891 5.891 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.122 3.878 18 O -0.490 6.490 19 C -0.234 4.234 20 C 0.112 3.888 21 O -0.317 6.317 22 C 0.030 3.970 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.133 0.867 29 H 0.027 0.973 30 H 0.085 0.915 31 H 0.005 0.995 32 H 0.260 0.740 33 H 0.381 0.619 34 H 0.123 0.877 35 H 0.050 0.950 36 H 0.093 0.907 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.151 -3.869 -11.554 14.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 C -0.126 4.126 4 C -0.078 4.078 5 C -0.084 4.084 6 C 0.057 3.943 7 H 0.062 0.938 8 C -0.190 4.190 9 C -0.542 4.542 10 H 0.073 0.927 11 C -0.139 4.139 12 N -0.530 5.530 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C 0.077 3.923 18 O -0.299 6.299 19 C -0.253 4.253 20 C 0.068 3.932 21 O -0.231 6.231 22 C -0.066 4.066 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.150 0.850 29 H 0.046 0.954 30 H 0.104 0.896 31 H 0.025 0.975 32 H 0.070 0.930 33 H 0.236 0.764 34 H 0.141 0.859 35 H 0.069 0.931 36 H 0.111 0.889 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.638 -4.212 -11.529 14.456 hybrid contribution 0.536 0.123 0.283 0.618 sum -7.102 -4.089 -11.245 13.915 Atomic orbital electron populations 1.21700 0.95428 1.00868 1.01945 1.20278 0.95680 0.92617 1.02174 1.19235 1.05684 0.96775 0.90917 1.20749 0.96220 0.94417 0.96434 1.20931 0.96364 0.94354 0.96741 1.17761 0.93534 0.96767 0.86232 0.93844 1.21812 0.95708 0.98746 1.02716 1.21064 1.14769 1.11747 1.06575 0.92660 1.24938 0.97025 0.95126 0.96843 1.69875 1.41372 1.24599 1.17163 0.86656 0.82887 0.80236 0.78239 1.20306 1.21298 1.20263 1.18104 0.97027 0.85562 0.91573 1.84827 1.37198 1.13671 1.94245 1.21265 1.08936 0.95954 0.99189 1.18406 0.97880 0.91364 0.85555 1.86022 1.81307 1.41039 1.14772 1.22936 1.01416 0.96062 0.86159 0.93114 0.92802 0.92671 0.91405 0.91382 0.84959 0.95363 0.89612 0.97546 0.92982 0.76407 0.85947 0.93140 0.88900 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.89 37.16 0.37 -1.48 16 2 C -0.07 -1.04 5.73 -27.88 -0.16 -1.20 16 3 C -0.13 -2.23 5.15 -104.45 -0.54 -2.77 16 4 C -0.06 -1.21 8.32 -39.62 -0.33 -1.54 16 5 C -0.08 -1.83 4.75 -104.45 -0.50 -2.33 16 6 C 0.08 1.90 2.44 -92.93 -0.23 1.67 16 7 H 0.04 1.19 6.99 -51.93 -0.36 0.83 16 8 C -0.13 -3.16 8.78 37.16 0.33 -2.83 16 9 C -0.50 -13.94 8.24 -34.44 -0.28 -14.23 16 10 H 0.06 1.54 7.60 -52.48 -0.40 1.14 16 11 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 12 N -0.89 -25.45 11.32 55.43 0.63 -24.82 16 13 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 C 0.12 2.45 6.67 -39.24 -0.26 2.19 16 18 O -0.49 -9.39 12.26 -19.42 -0.24 -9.62 16 19 C -0.23 -4.10 8.97 -39.29 -0.35 -4.46 16 20 C 0.11 1.93 6.65 -39.24 -0.26 1.67 16 21 O -0.32 -4.74 9.62 -19.43 -0.19 -4.93 16 22 C 0.03 0.32 9.81 101.05 0.99 1.31 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.73 8.04 -51.93 -0.42 0.31 16 26 H 0.07 0.97 7.85 -51.93 -0.41 0.56 16 27 H 0.07 0.96 8.00 -51.93 -0.42 0.55 16 28 H 0.13 2.66 7.54 -52.49 -0.40 2.27 16 29 H 0.03 0.64 7.39 -51.93 -0.38 0.25 16 30 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 31 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.38 5.40 9.06 45.56 0.41 5.81 16 34 H 0.12 1.84 6.30 -52.49 -0.33 1.51 16 35 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 LS Contribution 305.81 15.07 4.61 4.61 Total: -1.00 -30.75 305.81 -6.16 -36.91 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -4.64 Total: 3.68 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -1.32 Total: -22.36 kcal Atomic # 7 Polarization: -25.45 SS G_CDS: 0.63 Total: -24.82 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.43 Total: -14.55 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.75 -6.16 -36.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260094826.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.273 kcal (2) G-P(sol) polarization free energy of solvation -30.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds