Wall clock time and date at job start Mon Mar 30 2020 05:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47119 * 2 1 4 4 C 1.38203 * 119.97505 * 100.25081 * 3 2 1 5 5 C 1.38160 * 120.10742 * 180.25036 * 4 3 2 6 6 C 1.50698 * 119.96822 * 179.77009 * 5 4 3 7 7 H 1.09004 * 109.46968 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47241 * 299.97807 * 6 5 4 9 9 C 1.50697 * 109.47411 * 59.98209 * 6 5 4 10 10 H 1.08006 * 119.99828 * 359.97438 * 9 6 5 11 11 C 1.37871 * 120.00264 * 179.97438 * 9 6 5 12 12 N 1.31523 * 119.99706 * 0.02562 * 11 9 6 13 13 Si 1.86799 * 120.00293 * 179.97438 * 11 9 6 14 14 H 1.48497 * 109.46903 * 60.00293 * 13 11 9 15 15 H 1.48503 * 109.47192 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47069 * 300.00149 * 13 11 9 17 17 C 1.38794 * 120.05298 * 359.74955 * 5 4 3 18 18 O 1.35897 * 120.02435 * 179.97438 * 17 5 4 19 19 C 1.38611 * 119.94641 * 0.02562 * 17 5 4 20 20 C 1.38645 * 119.89159 * 359.97438 * 19 17 5 21 21 O 1.35901 * 120.02742 * 179.97438 * 20 19 17 22 22 C 1.42903 * 116.99879 * 359.97438 * 21 20 19 23 23 H 1.08997 * 109.46927 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46816 * 300.00271 * 1 2 3 25 25 H 1.08998 * 109.47027 * 59.99939 * 1 2 3 26 26 H 1.08999 * 109.47239 * 239.99642 * 2 1 3 27 27 H 1.09001 * 109.46984 * 119.99285 * 2 1 3 28 28 H 1.07996 * 119.94296 * 0.02562 * 4 3 2 29 29 H 1.08999 * 109.47018 * 60.00241 * 8 6 5 30 30 H 1.08997 * 109.47374 * 179.97438 * 8 6 5 31 31 H 1.09003 * 109.47553 * 300.00179 * 8 6 5 32 32 H 0.97005 * 119.99704 * 180.02562 * 12 11 9 33 33 H 0.96706 * 114.00026 * 270.02851 * 18 17 5 34 34 H 1.07998 * 120.05044 * 180.02562 * 19 17 5 35 35 H 1.09002 * 109.47382 * 300.00322 * 22 21 20 36 36 H 1.09001 * 109.46938 * 180.02562 * 22 21 20 37 37 H 1.09004 * 109.46926 * 60.00429 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4634 2.0008 1.1781 5 6 2.9196 3.3049 1.1821 6 6 3.3840 3.9359 2.4694 7 1 3.7055 4.9595 2.2770 8 6 2.2333 3.9437 3.4778 9 6 4.5374 3.1442 3.0296 10 1 4.8979 2.2710 2.5059 11 6 5.1326 3.5344 4.2104 12 7 4.6933 4.5974 4.8483 13 14 6.5619 2.5526 4.9051 14 1 7.6786 2.5441 3.9263 15 1 7.0195 3.1745 6.1736 16 1 6.1233 1.1584 5.1680 17 6 2.9509 4.0340 0.0016 18 8 3.3993 5.3169 0.0063 19 6 2.5235 3.4530 -1.1821 20 6 2.0662 2.1441 -1.1836 21 8 1.6460 1.5719 -2.3424 22 6 1.7025 2.3774 -3.5215 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5137 0.8901 28 1 2.4401 1.4349 2.0976 29 1 1.9119 2.9201 3.6702 30 1 2.5693 4.3997 4.4090 31 1 1.3990 4.5164 3.0727 32 1 5.1122 4.8721 5.6789 33 1 2.7080 5.9746 0.1633 34 1 2.5476 4.0186 -2.1018 35 1 1.0785 3.2611 -3.3881 36 1 1.3391 1.8015 -4.3726 37 1 2.7326 2.6840 -3.7030 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260094826.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:59 Heat of formation + Delta-G solvation = -94.504824 kcal Electronic energy + Delta-G solvation = -18651.892166 eV Core-core repulsion = 15779.365458 eV Total energy + Delta-G solvation = -2872.526708 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.40081 -39.38407 -37.50734 -36.14855 -34.21560 -32.87850 -30.05332 -29.44115 -27.81037 -27.17389 -24.53546 -24.01639 -22.40058 -20.87966 -19.70426 -18.37604 -17.76781 -17.25213 -16.82996 -16.53736 -15.80198 -15.62073 -15.02099 -14.93510 -14.59809 -14.43183 -14.19749 -13.58024 -13.32731 -13.10580 -12.97589 -12.82095 -12.60142 -12.56609 -12.33801 -12.12011 -12.03943 -11.74075 -11.62761 -11.50735 -11.01902 -10.90462 -10.42625 -9.56711 -8.75372 -8.07180 -6.20673 0.35107 0.58459 1.41108 1.42389 1.50073 2.42845 2.43423 2.77592 3.19731 3.40914 3.91273 3.99687 4.20603 4.33087 4.42879 4.45605 4.57770 4.59836 4.72481 4.75943 4.81146 4.93852 5.02843 5.08623 5.10267 5.17071 5.30071 5.35689 5.45666 5.53878 5.59564 5.71327 5.88103 6.08740 6.10528 6.38604 6.48005 6.87205 6.94320 7.46069 8.96419 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024455 B = 0.006604 C = 0.005973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.692005 B = 4238.674185 C = 4686.547933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.070 4.070 3 C -0.129 4.129 4 C -0.069 4.069 5 C -0.117 4.117 6 C 0.079 3.921 7 H 0.012 0.988 8 C -0.120 4.120 9 C -0.521 4.521 10 H 0.046 0.954 11 C 0.014 3.986 12 N -0.916 5.916 13 Si 0.951 3.049 14 H -0.277 1.277 15 H -0.281 1.281 16 H -0.269 1.269 17 C 0.112 3.888 18 O -0.505 6.505 19 C -0.230 4.230 20 C 0.123 3.877 21 O -0.320 6.320 22 C 0.018 3.982 23 H 0.073 0.927 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.122 0.878 29 H 0.030 0.970 30 H 0.058 0.942 31 H 0.025 0.975 32 H 0.261 0.739 33 H 0.400 0.600 34 H 0.150 0.850 35 H 0.061 0.939 36 H 0.124 0.876 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.781 -5.123 -13.392 16.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.107 4.107 3 C -0.129 4.129 4 C -0.087 4.087 5 C -0.118 4.118 6 C 0.061 3.939 7 H 0.030 0.970 8 C -0.178 4.178 9 C -0.559 4.559 10 H 0.064 0.936 11 C -0.184 4.184 12 N -0.556 5.556 13 Si 0.777 3.223 14 H -0.203 1.203 15 H -0.206 1.206 16 H -0.194 1.194 17 C 0.068 3.932 18 O -0.317 6.317 19 C -0.249 4.249 20 C 0.077 3.923 21 O -0.234 6.234 22 C -0.076 4.076 23 H 0.092 0.908 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.140 0.860 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.257 0.743 34 H 0.168 0.832 35 H 0.080 0.920 36 H 0.143 0.857 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.287 -5.461 -13.382 16.660 hybrid contribution 0.679 0.526 0.705 1.111 sum -7.607 -4.935 -12.677 15.586 Atomic orbital electron populations 1.21652 0.93881 1.02297 1.01520 1.20348 0.96941 0.90701 1.02710 1.19486 1.04858 0.98213 0.90375 1.20662 0.96978 0.93840 0.97197 1.20727 0.99366 0.95615 0.96114 1.17542 0.93244 0.94896 0.88254 0.97012 1.21630 0.96007 0.98884 1.01273 1.21361 1.15852 1.11771 1.06878 0.93596 1.25680 0.99414 0.96103 0.97200 1.70002 1.42406 1.25740 1.17404 0.85721 0.79805 0.79243 0.77574 1.20287 1.20625 1.19362 1.18222 0.97336 0.85818 0.91871 1.84761 1.38699 1.14003 1.94247 1.21444 1.07982 0.96291 0.99166 1.18482 0.96405 0.90975 0.86405 1.86033 1.80595 1.41831 1.14968 1.23312 1.02193 0.96892 0.85239 0.90792 0.93491 0.92792 0.90556 0.91132 0.85977 0.95047 0.92284 0.95630 0.92969 0.74263 0.83240 0.92020 0.85747 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.89 71.98 0.71 -2.50 16 2 C -0.07 -1.92 5.73 29.85 0.17 -1.75 16 3 C -0.13 -4.41 5.15 -19.75 -0.10 -4.52 16 4 C -0.07 -2.78 8.32 22.24 0.19 -2.59 16 5 C -0.12 -5.26 4.75 -19.75 -0.09 -5.36 16 6 C 0.08 4.12 2.44 -12.29 -0.03 4.09 16 7 H 0.01 0.67 6.99 -2.38 -0.02 0.66 16 8 C -0.12 -5.91 8.78 71.98 0.63 -5.28 16 9 C -0.52 -29.64 8.24 25.60 0.21 -29.43 16 10 H 0.05 2.63 7.60 -2.91 -0.02 2.60 16 11 C 0.01 0.82 5.30 84.65 0.45 1.27 16 12 N -0.92 -53.58 11.32 21.45 0.24 -53.34 16 13 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 15 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 17 C 0.11 4.47 6.67 22.49 0.15 4.62 16 18 O -0.51 -19.40 12.26 -92.39 -1.13 -20.53 16 19 C -0.23 -7.62 8.97 22.46 0.20 -7.42 16 20 C 0.12 3.95 6.65 22.49 0.15 4.10 16 21 O -0.32 -8.52 9.62 -92.44 -0.89 -9.41 16 22 C 0.02 0.32 9.81 113.37 1.11 1.43 16 23 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.05 1.28 8.04 -2.39 -0.02 1.26 16 26 H 0.08 1.98 7.85 -2.39 -0.02 1.96 16 27 H 0.07 1.89 8.00 -2.39 -0.02 1.88 16 28 H 0.12 5.05 7.54 -2.91 -0.02 5.03 16 29 H 0.03 1.46 7.39 -2.39 -0.02 1.44 16 30 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 31 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 33 H 0.40 11.35 9.06 -74.05 -0.67 10.68 16 34 H 0.15 4.04 6.30 -2.91 -0.02 4.02 16 35 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 36 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.05 0.97 7.66 -2.38 -0.02 0.95 16 Total: -1.00 -66.65 305.81 4.39 -62.26 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.40 Total: 17.62 kcal Atomic # 6 Polarization: -47.07 SS G_CDS: 3.75 Total: -43.32 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.24 Total: -53.34 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -2.02 Total: -29.94 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -66.65 4.39 -62.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260094826.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.244 kcal (2) G-P(sol) polarization free energy of solvation -66.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds