Wall clock time and date at job start Mon Mar 30 2020 06:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99822 * 2 1 4 4 O 1.42902 * 109.47230 * 282.30357 * 3 2 1 5 5 C 1.42907 * 113.99901 * 76.88159 * 4 3 2 6 6 C 1.50696 * 109.47186 * 162.30692 * 3 2 1 7 7 C 1.38243 * 119.99756 * 359.72670 * 6 3 2 8 8 C 1.38239 * 119.99499 * 179.74778 * 7 6 3 9 9 C 1.38230 * 120.00018 * 0.54308 * 8 7 6 10 10 C 1.50705 * 119.99705 * 179.72819 * 9 8 7 11 11 H 1.08999 * 109.47221 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.47085 * 299.97946 * 10 9 8 13 13 C 1.50696 * 109.47307 * 59.97830 * 10 9 8 14 14 H 1.08003 * 119.99725 * 359.97438 * 13 10 9 15 15 C 1.37880 * 120.00281 * 180.02562 * 13 10 9 16 16 N 1.31514 * 119.99742 * 0.02562 * 15 13 10 17 17 Si 1.86796 * 119.99979 * 180.02562 * 15 13 10 18 18 H 1.48495 * 109.47822 * 59.99771 * 17 15 13 19 19 H 1.48506 * 109.46878 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46928 * 299.99510 * 17 15 13 21 21 C 1.38225 * 120.00283 * 359.70969 * 9 8 7 22 22 C 1.38231 * 120.00412 * 0.02562 * 21 9 8 23 23 H 1.09008 * 109.46708 * 311.90735 * 1 2 3 24 24 H 1.09000 * 109.47387 * 71.90323 * 1 2 3 25 25 H 1.08997 * 109.46928 * 191.90833 * 1 2 3 26 26 H 1.08998 * 109.47457 * 42.30363 * 3 2 1 27 27 H 1.08997 * 109.46811 * 41.11019 * 5 4 3 28 28 H 1.08995 * 109.47310 * 161.11033 * 5 4 3 29 29 H 1.08998 * 109.47163 * 281.11149 * 5 4 3 30 30 H 1.07992 * 119.99833 * 359.97438 * 7 6 3 31 31 H 1.08005 * 119.99148 * 180.27802 * 8 7 6 32 32 H 1.09000 * 109.47133 * 179.97438 * 12 10 9 33 33 H 1.08998 * 109.47210 * 300.00103 * 12 10 9 34 34 H 1.09002 * 109.47113 * 60.00356 * 12 10 9 35 35 H 0.96999 * 119.99729 * 180.02562 * 16 15 13 36 36 H 1.08004 * 119.99907 * 179.97438 * 21 9 8 37 37 H 1.07998 * 120.00510 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.9417 1.8574 -1.3163 5 6 0.6461 2.3405 -1.6773 6 6 3.4511 1.2139 0.4318 7 6 3.9986 -0.0133 0.7566 8 6 5.3218 -0.0979 1.1476 9 6 6.0943 1.0459 1.2248 10 6 7.5351 0.9543 1.6570 11 1 7.9785 1.9500 1.6568 12 6 7.6081 0.3636 3.0666 13 6 8.2910 0.0677 0.7011 14 1 7.7791 -0.3845 -0.1355 15 6 9.6357 -0.1669 0.8952 16 7 10.2586 0.3826 1.9148 17 14 10.5727 -1.2652 -0.2901 18 1 10.5025 -0.6912 -1.6579 19 1 11.9922 -1.3566 0.1366 20 1 9.9684 -2.6217 -0.2909 21 6 5.5453 2.2735 0.9050 22 6 4.2237 2.3576 0.5087 23 1 -0.3633 0.6865 0.7649 24 1 -0.3634 0.3192 -0.9768 25 1 -0.3633 -1.0055 0.2121 26 1 1.4637 1.9465 0.6916 27 1 0.2030 2.8612 -0.8284 28 1 0.7359 3.0278 -2.5185 29 1 0.0111 1.5010 -1.9603 30 1 3.3937 -0.9061 0.7012 31 1 5.7508 -1.0572 1.3970 32 1 8.6502 0.2969 3.3790 33 1 7.0614 1.0048 3.7580 34 1 7.1648 -0.6322 3.0667 35 1 11.2048 0.2179 2.0511 36 1 6.1488 3.1671 0.9657 37 1 3.7947 3.3168 0.2593 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260116669.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:28 Heat of formation + Delta-G solvation = -88.862908 kcal Electronic energy + Delta-G solvation = -18154.393916 eV Core-core repulsion = 15282.111860 eV Total energy + Delta-G solvation = -2872.282056 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.84460 -39.54957 -36.98075 -36.27690 -33.56616 -31.74251 -31.00207 -28.48575 -27.20331 -26.90291 -25.72858 -23.64401 -22.96264 -21.14982 -18.41546 -18.26372 -18.03954 -17.97179 -16.80831 -15.91204 -15.72123 -15.57136 -15.25199 -14.75977 -14.55634 -14.50755 -14.21051 -13.74033 -13.67301 -13.30073 -13.19826 -12.81647 -12.64680 -12.46454 -12.36267 -12.17261 -12.09259 -11.74015 -11.20041 -11.08560 -10.98778 -10.71557 -10.46116 -9.70205 -9.33610 -8.09316 -6.23080 0.48088 0.62467 1.42410 1.43340 1.51385 2.42747 2.54729 2.81463 3.14330 3.19485 3.74224 3.96149 4.13716 4.24031 4.27259 4.35398 4.39848 4.43587 4.62515 4.72100 4.74041 4.79075 4.89419 4.98357 5.00379 5.16039 5.27817 5.29948 5.53714 5.59403 5.62799 5.71245 6.04877 6.08014 6.11191 6.15308 6.23084 6.38352 6.84669 7.44458 8.94979 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.034484 B = 0.004762 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.773028 B = 5878.359360 C = 6003.417094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.412 6.412 3 C 0.299 3.701 4 O -0.413 6.413 5 C 0.011 3.989 6 C -0.122 4.122 7 C -0.088 4.088 8 C -0.129 4.129 9 C -0.047 4.047 10 C 0.068 3.932 11 H 0.008 0.992 12 C -0.121 4.121 13 C -0.523 4.523 14 H 0.048 0.952 15 C 0.016 3.984 16 N -0.916 5.916 17 Si 0.953 3.047 18 H -0.275 1.275 19 H -0.281 1.281 20 H -0.271 1.271 21 C -0.145 4.145 22 C -0.086 4.086 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.134 0.866 31 H 0.113 0.887 32 H 0.060 0.940 33 H 0.026 0.974 34 H 0.031 0.969 35 H 0.262 0.738 36 H 0.124 0.876 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.379 3.079 -2.943 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.333 6.333 3 C 0.204 3.796 4 O -0.334 6.334 5 C -0.084 4.084 6 C -0.122 4.122 7 C -0.106 4.106 8 C -0.148 4.148 9 C -0.047 4.047 10 C 0.050 3.950 11 H 0.026 0.974 12 C -0.179 4.179 13 C -0.561 4.561 14 H 0.066 0.934 15 C -0.183 4.183 16 N -0.555 5.555 17 Si 0.779 3.221 18 H -0.200 1.200 19 H -0.206 1.206 20 H -0.197 1.197 21 C -0.163 4.163 22 C -0.104 4.104 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.117 0.883 26 H 0.105 0.895 27 H 0.082 0.918 28 H 0.114 0.886 29 H 0.076 0.924 30 H 0.152 0.848 31 H 0.131 0.869 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.141 0.859 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -19.945 2.935 -2.973 20.377 hybrid contribution 0.577 -0.398 -0.374 0.794 sum -19.368 2.536 -3.347 19.818 Atomic orbital electron populations 1.23330 0.79100 1.04479 1.01649 1.87999 1.21964 1.29392 1.93966 1.21761 0.91057 0.82473 0.84263 1.88118 1.32781 1.78297 1.34201 1.23312 0.83875 0.99431 1.01822 1.19345 0.94270 0.94176 1.04417 1.21021 0.94204 0.97830 0.97547 1.21028 0.93821 0.98342 1.01560 1.20551 0.96409 0.93456 0.94255 1.17794 0.87601 0.95836 0.93770 0.97394 1.21620 1.01586 0.98053 0.96591 1.21336 0.94373 1.29544 1.10843 0.93392 1.25685 0.98376 0.97239 0.96955 1.69996 1.10363 1.45157 1.29989 0.85687 0.77602 0.79506 0.79336 1.19994 1.20592 1.19667 1.21180 0.95680 0.97349 1.02125 1.20922 0.93097 0.98404 0.98017 0.92085 0.92231 0.88322 0.89475 0.91788 0.88610 0.92380 0.84808 0.86936 0.92078 0.95525 0.95026 0.92845 0.85851 0.83889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 10.31 113.37 1.17 1.32 16 2 O -0.41 -10.76 9.08 -126.21 -1.15 -11.90 16 3 C 0.30 7.89 3.14 71.23 0.22 8.11 16 4 O -0.41 -11.04 10.47 -126.21 -1.32 -12.36 16 5 C 0.01 0.17 10.10 113.37 1.15 1.32 16 6 C -0.12 -4.05 5.56 -19.86 -0.11 -4.17 16 7 C -0.09 -3.22 9.38 22.27 0.21 -3.01 16 8 C -0.13 -5.45 8.71 22.27 0.19 -5.26 16 9 C -0.05 -2.11 4.74 -19.87 -0.09 -2.20 16 10 C 0.07 3.57 2.48 -12.28 -0.03 3.54 16 11 H 0.01 0.45 7.88 -2.39 -0.02 0.43 16 12 C -0.12 -6.02 8.78 71.98 0.63 -5.39 16 13 C -0.52 -29.61 8.24 25.60 0.21 -29.40 16 14 H 0.05 2.74 7.60 -2.91 -0.02 2.71 16 15 C 0.02 0.91 5.30 84.66 0.45 1.36 16 16 N -0.92 -53.25 11.32 21.45 0.24 -53.00 16 17 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 18 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 C -0.15 -5.71 9.67 22.26 0.22 -5.50 16 22 C -0.09 -2.87 9.61 22.27 0.21 -2.66 16 23 H 0.06 0.74 7.85 -2.38 -0.02 0.72 16 24 H 0.06 0.81 5.23 -2.39 -0.01 0.80 16 25 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.09 1.81 7.39 -2.39 -0.02 1.79 16 27 H 0.06 0.75 7.71 -2.39 -0.02 0.73 16 28 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.06 0.81 5.61 -2.39 -0.01 0.80 16 30 H 0.13 4.50 7.00 -2.91 -0.02 4.48 16 31 H 0.11 4.86 7.58 -2.91 -0.02 4.84 16 32 H 0.06 3.33 6.07 -2.39 -0.01 3.32 16 33 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.03 1.50 7.39 -2.39 -0.02 1.48 16 35 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 36 H 0.12 4.59 7.95 -2.91 -0.02 4.57 16 37 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -65.62 303.80 5.28 -60.34 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 1.05 Total: 12.31 kcal Atomic # 6 Polarization: -46.35 SS G_CDS: 4.43 Total: -41.93 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.24 Total: -53.00 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -2.47 Total: -24.26 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -65.62 5.28 -60.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260116669.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.521 kcal (2) G-P(sol) polarization free energy of solvation -65.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds