Wall clock time and date at job start Mon Mar 30 2020 06:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42898 * 114.00223 * 2 1 4 4 O 1.42899 * 109.47169 * 280.98923 * 3 2 1 5 5 C 1.42908 * 113.99918 * 75.92859 * 4 3 2 6 6 C 1.50703 * 109.47681 * 160.98935 * 3 2 1 7 7 C 1.38234 * 119.99316 * 359.72495 * 6 3 2 8 8 C 1.38237 * 119.99389 * 179.76588 * 7 6 3 9 9 C 1.38234 * 120.00269 * 0.50656 * 8 7 6 10 10 C 1.50697 * 120.00229 * 179.72464 * 9 8 7 11 11 H 1.09007 * 109.47116 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47352 * 60.02531 * 10 9 8 13 13 C 1.50696 * 109.47230 * 300.02287 * 10 9 8 14 14 H 1.08004 * 119.99922 * 32.59050 * 13 10 9 15 15 C 1.37879 * 120.00204 * 212.59190 * 13 10 9 16 16 N 1.31516 * 119.99994 * 176.80494 * 15 13 10 17 17 Si 1.86803 * 120.00011 * 356.80224 * 15 13 10 18 18 H 1.48496 * 109.46994 * 84.69251 * 17 15 13 19 19 H 1.48501 * 109.47119 * 204.69984 * 17 15 13 20 20 H 1.48508 * 109.46926 * 324.69794 * 17 15 13 21 21 C 1.38239 * 119.99704 * 359.74933 * 9 8 7 22 22 C 1.38230 * 120.00334 * 359.97438 * 21 9 8 23 23 H 1.09000 * 109.47148 * 70.67250 * 1 2 3 24 24 H 1.09003 * 109.47497 * 190.66981 * 1 2 3 25 25 H 1.08995 * 109.47507 * 310.67229 * 1 2 3 26 26 H 1.09001 * 109.47322 * 40.98774 * 3 2 1 27 27 H 1.09000 * 109.47353 * 161.20490 * 5 4 3 28 28 H 1.08994 * 109.47258 * 281.20844 * 5 4 3 29 29 H 1.09007 * 109.46635 * 41.20987 * 5 4 3 30 30 H 1.07994 * 120.00407 * 0.02562 * 7 6 3 31 31 H 1.08007 * 119.99825 * 180.23315 * 8 7 6 32 32 H 1.08999 * 109.46928 * 61.50879 * 12 10 9 33 33 H 1.08994 * 109.47265 * 181.51756 * 12 10 9 34 34 H 1.09003 * 109.46796 * 301.51710 * 12 10 9 35 35 H 0.97000 * 120.00025 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.00001 * 179.97438 * 21 9 8 37 37 H 1.07997 * 120.00324 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 1.9693 1.8450 -1.3226 5 6 0.6769 2.3050 -1.7230 6 6 3.4417 1.2180 0.4628 7 6 3.9821 -0.0059 0.8105 8 6 5.2967 -0.0868 1.2304 9 6 6.0676 1.0577 1.3126 10 6 7.4988 0.9703 1.7763 11 1 7.9421 1.9662 1.7766 12 6 8.2868 0.0616 0.8307 13 6 7.5412 0.4014 3.1711 14 1 6.8037 -0.3244 3.4809 15 6 8.5213 0.8073 4.0518 16 7 8.5212 0.3588 5.2881 17 14 9.8493 1.9944 3.4890 18 1 9.3519 3.3881 3.6120 19 1 11.0573 1.8233 4.3356 20 1 10.1944 1.7153 2.0718 21 6 5.5256 2.2823 0.9700 22 6 4.2128 2.3625 0.5446 23 1 -0.3633 0.3401 -0.9697 24 1 -0.3634 -1.0099 0.1903 25 1 -0.3634 0.6697 0.7794 26 1 1.4493 1.9529 0.6740 27 1 0.7792 2.9852 -2.5686 28 1 0.0622 1.4533 -2.0140 29 1 0.2036 2.8276 -0.8916 30 1 3.3786 -0.8994 0.7501 31 1 5.7200 -1.0435 1.4985 32 1 8.2788 0.4871 -0.1728 33 1 9.3154 -0.0231 1.1813 34 1 7.8275 -0.9267 0.8099 35 1 9.2109 0.6441 5.9076 36 1 6.1278 3.1765 1.0346 37 1 3.7892 3.3192 0.2773 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260116671.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:31 Heat of formation + Delta-G solvation = -71.138255 kcal Electronic energy + Delta-G solvation = -18177.850715 eV Core-core repulsion = 15306.337257 eV Total energy + Delta-G solvation = -2871.513457 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.68587 -38.29154 -36.04402 -34.47677 -31.88754 -30.34149 -29.95146 -27.55012 -26.15862 -25.17737 -24.52432 -22.17132 -21.44209 -19.37048 -17.36210 -17.26779 -16.84659 -16.67062 -15.08218 -14.71029 -14.47069 -14.21751 -13.92827 -13.69566 -13.54168 -12.89456 -12.68481 -12.49466 -12.34311 -12.16900 -12.03994 -11.58428 -11.15014 -11.12526 -10.73948 -10.57501 -10.32598 -10.15309 -9.90270 -9.85156 -9.56874 -9.08770 -8.56920 -8.25664 -7.83028 -6.08344 -4.07292 1.90470 2.07575 3.28426 3.37116 3.39499 3.52516 3.79610 4.41093 4.46758 4.73231 4.87752 5.00059 5.07495 5.18307 5.25917 5.26701 5.40735 5.49381 5.61216 5.63093 5.88553 6.14248 6.23032 6.34267 6.49828 6.62220 6.72175 6.79176 6.84756 6.94076 7.02203 7.10157 7.21078 7.33450 7.55762 7.68491 7.75321 8.50577 8.96528 9.53349 11.04629 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.039939 B = 0.004888 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.909541 B = 5727.044911 C = 5960.528005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.386 6.386 3 C 0.296 3.704 4 O -0.385 6.385 5 C 0.019 3.981 6 C -0.121 4.121 7 C -0.084 4.084 8 C -0.116 4.116 9 C -0.013 4.013 10 C 0.037 3.963 11 H 0.037 0.963 12 C -0.137 4.137 13 C -0.505 4.505 14 H 0.077 0.923 15 C 0.071 3.929 16 N -0.899 5.899 17 Si 0.873 3.127 18 H -0.276 1.276 19 H -0.289 1.289 20 H -0.261 1.261 21 C -0.138 4.138 22 C -0.092 4.092 23 H 0.048 0.952 24 H 0.087 0.913 25 H 0.043 0.957 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.024 0.976 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.264 0.736 36 H 0.117 0.883 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.342 3.325 -11.552 18.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.306 6.306 3 C 0.201 3.799 4 O -0.305 6.305 5 C -0.077 4.077 6 C -0.121 4.121 7 C -0.102 4.102 8 C -0.134 4.134 9 C -0.013 4.013 10 C 0.018 3.982 11 H 0.055 0.945 12 C -0.195 4.195 13 C -0.543 4.543 14 H 0.095 0.905 15 C -0.130 4.130 16 N -0.537 5.537 17 Si 0.701 3.299 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.186 1.186 21 C -0.156 4.156 22 C -0.110 4.110 23 H 0.066 0.934 24 H 0.106 0.894 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.135 0.865 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.965 3.173 -11.471 18.349 hybrid contribution 0.162 0.897 0.049 0.913 sum -13.803 4.070 -11.422 18.372 Atomic orbital electron populations 1.23078 0.81407 1.03148 1.00256 1.88041 1.19397 1.29406 1.93745 1.21859 0.92909 0.81803 0.83289 1.88161 1.29730 1.78935 1.33697 1.23045 0.85647 0.98819 1.00209 1.18909 0.92480 0.94865 1.05889 1.20895 0.95043 0.96673 0.97634 1.21040 0.93167 0.99207 0.99987 1.20443 0.97807 0.92164 0.90867 1.18327 0.87673 0.96293 0.95878 0.94508 1.22055 1.00443 1.00037 0.96940 1.20946 1.14306 1.25253 0.93767 0.90495 1.25024 0.97488 0.95949 0.94562 1.69897 1.34525 1.44928 1.04305 0.86937 0.81828 0.81792 0.79383 1.20231 1.21533 1.18580 1.21001 0.94902 0.97815 1.01896 1.20638 0.94127 0.96915 0.99364 0.93376 0.89448 0.93883 0.92128 0.89812 0.93339 0.93934 0.85841 0.85752 0.95699 0.93277 0.93341 0.92608 0.86469 0.86895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.36 101.05 1.05 1.21 16 2 O -0.39 -5.50 9.07 -59.04 -0.54 -6.03 16 3 C 0.30 4.30 3.14 36.01 0.11 4.42 16 4 O -0.38 -5.50 10.47 -59.04 -0.62 -6.12 16 5 C 0.02 0.18 10.06 101.05 1.02 1.20 16 6 C -0.12 -2.10 5.56 -104.62 -0.58 -2.68 16 7 C -0.08 -1.55 9.38 -39.58 -0.37 -1.92 16 8 C -0.12 -2.35 8.57 -39.58 -0.34 -2.69 16 9 C -0.01 -0.27 4.77 -104.62 -0.50 -0.77 16 10 C 0.04 0.87 2.06 -92.93 -0.19 0.68 16 11 H 0.04 0.86 5.53 -51.93 -0.29 0.58 16 12 C -0.14 -2.92 8.81 37.16 0.33 -2.60 16 13 C -0.51 -13.95 8.65 -34.44 -0.30 -14.24 16 14 H 0.08 2.31 7.64 -52.48 -0.40 1.91 16 15 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 16 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 17 Si 0.87 21.24 26.34 -169.99 -4.48 16.76 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 20 H -0.26 -6.03 6.22 56.52 0.35 -5.68 16 21 C -0.14 -2.65 9.67 -39.58 -0.38 -3.03 16 22 C -0.09 -1.59 9.61 -39.58 -0.38 -1.97 16 23 H 0.05 0.40 5.16 -51.93 -0.27 0.13 16 24 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.04 0.36 7.87 -51.93 -0.41 -0.05 16 26 H 0.06 0.77 7.41 -51.93 -0.38 0.39 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.41 5.68 -51.93 -0.29 0.12 16 29 H 0.04 0.33 7.73 -51.93 -0.40 -0.07 16 30 H 0.12 2.10 7.01 -52.49 -0.37 1.73 16 31 H 0.12 2.50 7.51 -52.48 -0.39 2.11 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.05 1.07 6.85 -51.93 -0.36 0.71 16 34 H 0.05 0.99 7.34 -51.93 -0.38 0.61 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.12 2.07 7.95 -52.49 -0.42 1.66 16 37 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 300.83 15.07 4.53 4.53 Total: -1.00 -31.30 300.83 -6.20 -37.50 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -5.24 Total: 0.29 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -0.64 Total: -20.45 kcal Atomic # 7 Polarization: -27.26 SS G_CDS: 0.77 Total: -26.48 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: -1.15 Total: -12.15 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.48 Total: 16.76 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.30 -6.20 -37.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260116671.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.638 kcal (2) G-P(sol) polarization free energy of solvation -31.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds