Wall clock time and date at job start Mon Mar 30 2020 06:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42898 * 114.00223 * 2 1 4 4 O 1.42899 * 109.47169 * 280.98923 * 3 2 1 5 5 C 1.42908 * 113.99918 * 75.92859 * 4 3 2 6 6 C 1.50703 * 109.47681 * 160.98935 * 3 2 1 7 7 C 1.38234 * 119.99316 * 359.72495 * 6 3 2 8 8 C 1.38237 * 119.99389 * 179.76588 * 7 6 3 9 9 C 1.38234 * 120.00269 * 0.50656 * 8 7 6 10 10 C 1.50697 * 120.00229 * 179.72464 * 9 8 7 11 11 H 1.09007 * 109.47116 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47352 * 60.02531 * 10 9 8 13 13 C 1.50696 * 109.47230 * 300.02287 * 10 9 8 14 14 H 1.08004 * 119.99922 * 32.59050 * 13 10 9 15 15 C 1.37879 * 120.00204 * 212.59190 * 13 10 9 16 16 N 1.31516 * 119.99994 * 176.80494 * 15 13 10 17 17 Si 1.86803 * 120.00011 * 356.80224 * 15 13 10 18 18 H 1.48496 * 109.46994 * 84.69251 * 17 15 13 19 19 H 1.48501 * 109.47119 * 204.69984 * 17 15 13 20 20 H 1.48508 * 109.46926 * 324.69794 * 17 15 13 21 21 C 1.38239 * 119.99704 * 359.74933 * 9 8 7 22 22 C 1.38230 * 120.00334 * 359.97438 * 21 9 8 23 23 H 1.09000 * 109.47148 * 70.67250 * 1 2 3 24 24 H 1.09003 * 109.47497 * 190.66981 * 1 2 3 25 25 H 1.08995 * 109.47507 * 310.67229 * 1 2 3 26 26 H 1.09001 * 109.47322 * 40.98774 * 3 2 1 27 27 H 1.09000 * 109.47353 * 161.20490 * 5 4 3 28 28 H 1.08994 * 109.47258 * 281.20844 * 5 4 3 29 29 H 1.09007 * 109.46635 * 41.20987 * 5 4 3 30 30 H 1.07994 * 120.00407 * 0.02562 * 7 6 3 31 31 H 1.08007 * 119.99825 * 180.23315 * 8 7 6 32 32 H 1.08999 * 109.46928 * 61.50879 * 12 10 9 33 33 H 1.08994 * 109.47265 * 181.51756 * 12 10 9 34 34 H 1.09003 * 109.46796 * 301.51710 * 12 10 9 35 35 H 0.97000 * 120.00025 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.00001 * 179.97438 * 21 9 8 37 37 H 1.07997 * 120.00324 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 1.9693 1.8450 -1.3226 5 6 0.6769 2.3050 -1.7230 6 6 3.4417 1.2180 0.4628 7 6 3.9821 -0.0059 0.8105 8 6 5.2967 -0.0868 1.2304 9 6 6.0676 1.0577 1.3126 10 6 7.4988 0.9703 1.7763 11 1 7.9421 1.9662 1.7766 12 6 8.2868 0.0616 0.8307 13 6 7.5412 0.4014 3.1711 14 1 6.8037 -0.3244 3.4809 15 6 8.5213 0.8073 4.0518 16 7 8.5212 0.3588 5.2881 17 14 9.8493 1.9944 3.4890 18 1 9.3519 3.3881 3.6120 19 1 11.0573 1.8233 4.3356 20 1 10.1944 1.7153 2.0718 21 6 5.5256 2.2823 0.9700 22 6 4.2128 2.3625 0.5446 23 1 -0.3633 0.3401 -0.9697 24 1 -0.3634 -1.0099 0.1903 25 1 -0.3634 0.6697 0.7794 26 1 1.4493 1.9529 0.6740 27 1 0.7792 2.9852 -2.5686 28 1 0.0622 1.4533 -2.0140 29 1 0.2036 2.8276 -0.8916 30 1 3.3786 -0.8994 0.7501 31 1 5.7200 -1.0435 1.4985 32 1 8.2788 0.4871 -0.1728 33 1 9.3154 -0.0231 1.1813 34 1 7.8275 -0.9267 0.8099 35 1 9.2109 0.6441 5.9076 36 1 6.1278 3.1765 1.0346 37 1 3.7892 3.3192 0.2773 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260116671.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:30 Heat of formation + Delta-G solvation = -90.544961 kcal Electronic energy + Delta-G solvation = -18178.692253 eV Core-core repulsion = 15306.337257 eV Total energy + Delta-G solvation = -2872.354995 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.86708 -39.58535 -36.98923 -36.23322 -33.86055 -31.77903 -31.37710 -28.57789 -27.16707 -26.91413 -25.77232 -23.65631 -22.92708 -21.03095 -18.94310 -18.26714 -18.13963 -18.00026 -16.75991 -15.95766 -15.74557 -15.50073 -15.27074 -14.83464 -14.53141 -14.48151 -14.29141 -13.94738 -13.86349 -13.71256 -13.29393 -12.96411 -12.57935 -12.46146 -12.38248 -12.20195 -11.86158 -11.75877 -11.33525 -11.12340 -11.01521 -10.72272 -10.70982 -9.71534 -9.35448 -8.26253 -6.29813 0.45976 0.61209 1.36809 1.39467 1.50404 2.37550 2.51862 2.79344 3.06188 3.17571 3.72760 3.95297 4.07325 4.20778 4.25124 4.28348 4.39733 4.41165 4.57159 4.61557 4.69645 4.72544 4.80826 4.86879 4.96775 4.97757 5.16704 5.22926 5.29089 5.47802 5.59703 5.64507 5.69933 5.97625 6.06428 6.13608 6.18128 6.37303 6.75893 7.34438 8.90475 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.039939 B = 0.004888 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.909541 B = 5727.044911 C = 5960.528005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.412 6.412 3 C 0.298 3.702 4 O -0.409 6.409 5 C 0.011 3.989 6 C -0.121 4.121 7 C -0.089 4.089 8 C -0.131 4.131 9 C -0.043 4.043 10 C 0.037 3.963 11 H 0.041 0.959 12 C -0.132 4.132 13 C -0.505 4.505 14 H 0.034 0.966 15 C 0.011 3.989 16 N -0.951 5.951 17 Si 0.938 3.062 18 H -0.266 1.266 19 H -0.289 1.289 20 H -0.239 1.239 21 C -0.144 4.144 22 C -0.087 4.087 23 H 0.062 0.938 24 H 0.098 0.902 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.132 0.868 31 H 0.110 0.890 32 H 0.051 0.949 33 H 0.042 0.958 34 H 0.045 0.955 35 H 0.265 0.735 36 H 0.132 0.868 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.597 5.252 -13.610 21.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.333 6.333 3 C 0.204 3.796 4 O -0.330 6.330 5 C -0.084 4.084 6 C -0.121 4.121 7 C -0.107 4.107 8 C -0.149 4.149 9 C -0.044 4.044 10 C 0.018 3.982 11 H 0.059 0.941 12 C -0.190 4.190 13 C -0.543 4.543 14 H 0.052 0.948 15 C -0.185 4.185 16 N -0.591 5.591 17 Si 0.761 3.239 18 H -0.191 1.191 19 H -0.216 1.216 20 H -0.162 1.162 21 C -0.162 4.162 22 C -0.105 4.105 23 H 0.081 0.919 24 H 0.116 0.884 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.116 0.884 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.149 0.851 31 H 0.128 0.872 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.150 0.850 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -15.246 5.097 -13.561 21.032 hybrid contribution 0.335 0.235 0.642 0.761 sum -14.911 5.332 -12.919 20.437 Atomic orbital electron populations 1.23334 0.79118 1.04478 1.01690 1.87992 1.21946 1.29421 1.93959 1.21739 0.91210 0.82549 0.84121 1.88101 1.32416 1.79184 1.33307 1.23306 0.84035 0.99644 1.01437 1.19349 0.94340 0.94253 1.04161 1.20997 0.94270 0.97910 0.97545 1.21007 0.94283 0.98560 1.01047 1.20347 0.96967 0.93579 0.93467 1.18260 0.89803 0.96319 0.93784 0.94121 1.21947 0.99502 0.99751 0.97808 1.21168 1.12847 1.24118 0.96126 0.94803 1.25912 1.00088 0.98102 0.94445 1.70055 1.35918 1.47251 1.05905 0.85897 0.78463 0.79541 0.79964 1.19109 1.21574 1.16217 1.21211 0.96050 0.97306 1.01601 1.20948 0.93245 0.98301 0.97991 0.91931 0.88350 0.92370 0.89888 0.88354 0.92429 0.92035 0.85059 0.87236 0.93047 0.93885 0.93557 0.92595 0.85020 0.83728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 10.36 113.37 1.18 1.32 16 2 O -0.41 -10.87 9.07 -126.21 -1.15 -12.02 16 3 C 0.30 7.87 3.14 71.24 0.22 8.09 16 4 O -0.41 -10.45 10.47 -126.21 -1.32 -11.77 16 5 C 0.01 0.17 10.06 113.37 1.14 1.31 16 6 C -0.12 -3.97 5.56 -19.86 -0.11 -4.08 16 7 C -0.09 -3.25 9.38 22.27 0.21 -3.05 16 8 C -0.13 -5.42 8.57 22.27 0.19 -5.23 16 9 C -0.04 -1.85 4.77 -19.87 -0.09 -1.95 16 10 C 0.04 1.74 2.06 -12.29 -0.03 1.72 16 11 H 0.04 1.85 5.53 -2.38 -0.01 1.84 16 12 C -0.13 -5.56 8.81 71.98 0.63 -4.92 16 13 C -0.50 -28.79 8.65 25.60 0.22 -28.57 16 14 H 0.03 2.16 7.64 -2.91 -0.02 2.13 16 15 C 0.01 0.65 5.47 84.65 0.46 1.11 16 16 N -0.95 -59.73 13.96 21.45 0.30 -59.43 16 17 Si 0.94 43.72 26.34 68.60 1.81 45.52 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 20 H -0.24 -10.19 6.22 99.48 0.62 -9.57 16 21 C -0.14 -5.29 9.67 22.27 0.22 -5.08 16 22 C -0.09 -2.78 9.61 22.27 0.21 -2.57 16 23 H 0.06 0.84 5.16 -2.39 -0.01 0.83 16 24 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.06 0.78 7.87 -2.39 -0.02 0.76 16 26 H 0.08 1.80 7.41 -2.39 -0.02 1.79 16 27 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 0.78 5.68 -2.39 -0.01 0.76 16 29 H 0.06 0.72 7.73 -2.38 -0.02 0.70 16 30 H 0.13 4.48 7.01 -2.91 -0.02 4.46 16 31 H 0.11 4.70 7.51 -2.91 -0.02 4.68 16 32 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.04 1.81 6.85 -2.39 -0.02 1.80 16 34 H 0.05 1.91 7.34 -2.39 -0.02 1.90 16 35 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 36 H 0.13 4.36 7.95 -2.91 -0.02 4.34 16 37 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -69.26 300.83 5.06 -64.20 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.97 Total: 15.38 kcal Atomic # 6 Polarization: -46.35 SS G_CDS: 4.46 Total: -41.89 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: 0.30 Total: -59.43 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -2.47 Total: -23.78 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.81 Total: 45.52 kcal Total: -69.26 5.06 -64.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260116671.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.349 kcal (2) G-P(sol) polarization free energy of solvation -69.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds