Wall clock time and date at job start Mon Mar 30 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35985 * 117.00156 * 2 1 4 4 C 1.39194 * 120.07405 * 82.86546 * 3 2 1 5 5 O 1.35987 * 120.07329 * 359.97438 * 4 3 2 6 6 C 1.38524 * 119.85329 * 179.97438 * 4 3 2 7 7 C 1.50702 * 119.99988 * 179.97438 * 6 4 3 8 8 C 1.38289 * 120.00301 * 0.02562 * 6 4 3 9 9 C 1.38209 * 120.14066 * 359.97027 * 8 6 4 10 10 C 1.38284 * 120.15010 * 0.30621 * 9 8 6 11 11 C 1.50705 * 119.99932 * 179.72248 * 10 9 8 12 12 C 1.52997 * 109.47202 * 5.49498 * 11 10 9 13 13 C 1.53000 * 109.47096 * 125.50243 * 11 10 9 14 14 C 1.50701 * 109.46751 * 245.49658 * 11 10 9 15 15 H 1.08006 * 120.00348 * 4.15697 * 14 11 10 16 16 C 1.37874 * 119.99827 * 184.15090 * 14 11 10 17 17 N 1.31515 * 120.00256 * 0.02562 * 16 14 11 18 18 Si 1.86806 * 119.99914 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.46914 * 90.00119 * 18 16 14 20 20 H 1.48497 * 109.47072 * 210.00091 * 18 16 14 21 21 H 1.48500 * 109.47089 * 330.00419 * 18 16 14 22 22 H 1.08997 * 109.47018 * 65.68738 * 1 2 3 23 23 H 1.08997 * 109.47190 * 185.69421 * 1 2 3 24 24 H 1.09005 * 109.46849 * 305.69293 * 1 2 3 25 25 H 0.96701 * 114.00400 * 270.01976 * 5 4 3 26 26 H 1.09004 * 109.47162 * 270.02332 * 7 6 4 27 27 H 1.08993 * 109.46992 * 30.02242 * 7 6 4 28 28 H 1.08998 * 109.47490 * 150.02710 * 7 6 4 29 29 H 1.07999 * 119.93099 * 180.02562 * 8 6 4 30 30 H 1.08001 * 119.92254 * 180.02562 * 9 8 6 31 31 H 1.09003 * 109.47017 * 60.00782 * 12 11 10 32 32 H 1.08998 * 109.46854 * 179.97438 * 12 11 10 33 33 H 1.08999 * 109.47557 * 300.00138 * 12 11 10 34 34 H 1.08997 * 109.47304 * 67.67041 * 13 11 10 35 35 H 1.08999 * 109.46842 * 187.67297 * 13 11 10 36 36 H 1.09003 * 109.47076 * 307.66261 * 13 11 10 37 37 H 0.96996 * 119.99949 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 2.2298 1.9010 1.1952 5 8 1.7915 1.3647 2.3655 6 6 2.8598 3.1347 1.1900 7 6 3.0596 3.8843 2.4821 8 6 3.3045 3.6791 -0.0009 9 6 3.1224 2.9944 -1.1877 10 6 2.4892 1.7651 -1.1902 11 6 2.2869 1.0244 -2.4870 12 6 2.9883 1.7774 -3.6192 13 6 2.8765 -0.3825 -2.3681 14 6 0.8130 0.9276 -2.7855 15 1 0.0980 1.4167 -2.1404 16 6 0.3771 0.2149 -3.8822 17 7 1.2475 -0.3810 -4.6676 18 14 -1.4500 0.0956 -4.2527 19 1 -1.8505 1.2204 -5.1357 20 1 -1.7339 -1.1933 -4.9333 21 1 -2.2180 0.1649 -2.9836 22 1 -0.3633 0.4231 -0.9365 23 1 -0.3633 -1.0226 0.1020 24 1 -0.3633 0.5996 0.8347 25 1 0.8838 1.6075 2.5939 26 1 2.1992 4.5280 2.6655 27 1 3.1630 3.1737 3.3020 28 1 3.9608 4.4934 2.4132 29 1 3.7959 4.6408 -0.0036 30 1 3.4715 3.4226 -2.1157 31 1 4.0544 1.8473 -3.4033 32 1 2.8423 1.2414 -4.5570 33 1 2.5682 2.7796 -3.7039 34 1 2.2891 -0.9637 -1.6574 35 1 2.8535 -0.8696 -3.3429 36 1 3.9072 -0.3162 -2.0194 37 1 0.9408 -0.8828 -5.4390 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260117572.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:20 Heat of formation + Delta-G solvation = -57.053822 kcal Electronic energy + Delta-G solvation = -19495.050154 eV Core-core repulsion = 16624.147443 eV Total energy + Delta-G solvation = -2870.902711 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.96043 -37.10332 -36.55171 -34.82010 -32.04338 -30.21306 -29.05680 -26.34393 -25.85791 -25.70598 -24.92298 -21.59425 -21.26651 -19.26454 -17.37776 -16.68018 -16.36336 -15.42981 -15.20244 -14.68006 -14.23020 -13.95798 -13.35179 -13.21269 -13.03938 -12.63207 -12.21194 -12.04212 -11.64249 -11.38487 -11.22259 -11.11649 -10.88369 -10.80513 -10.63777 -10.46900 -10.36333 -10.19160 -9.69634 -9.30032 -8.81292 -8.66958 -8.34976 -7.92471 -7.61939 -5.98594 -4.07382 1.76841 1.91144 3.24697 3.32382 3.33101 4.06450 4.37954 4.55315 4.70803 5.24780 5.28501 5.44403 5.68603 5.77040 5.84482 5.91065 6.06314 6.11851 6.14984 6.33508 6.52062 6.61403 6.76917 6.82216 6.85084 6.95438 7.05553 7.14317 7.28389 7.41214 7.51958 7.70668 7.74093 7.86882 8.14222 8.21624 8.43518 8.46801 8.87981 9.54250 11.02475 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.026708 B = 0.008486 C = 0.007453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.140243 B = 3298.756179 C = 3756.111121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.084 3.916 4 C 0.068 3.932 5 O -0.490 6.490 6 C -0.132 4.132 7 C -0.102 4.102 8 C -0.118 4.118 9 C -0.126 4.126 10 C -0.035 4.035 11 C 0.102 3.898 12 C -0.131 4.131 13 C -0.127 4.127 14 C -0.495 4.495 15 H 0.056 0.944 16 C 0.068 3.932 17 N -0.881 5.881 18 Si 0.885 3.115 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.275 1.275 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.018 0.982 25 H 0.375 0.625 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.117 0.883 30 H 0.129 0.871 31 H 0.013 0.987 32 H 0.079 0.921 33 H 0.029 0.971 34 H 0.051 0.949 35 H 0.083 0.917 36 H 0.000 1.000 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.363 5.795 8.729 10.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.228 6.228 3 C 0.040 3.960 4 C 0.024 3.976 5 O -0.298 6.298 6 C -0.132 4.132 7 C -0.159 4.159 8 C -0.137 4.137 9 C -0.144 4.144 10 C -0.036 4.036 11 C 0.101 3.899 12 C -0.189 4.189 13 C -0.184 4.184 14 C -0.533 4.533 15 H 0.074 0.926 16 C -0.133 4.133 17 N -0.520 5.520 18 Si 0.713 3.287 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.200 1.200 22 H 0.099 0.901 23 H 0.097 0.903 24 H 0.037 0.963 25 H 0.229 0.771 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.135 0.865 30 H 0.147 0.853 31 H 0.032 0.968 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.019 0.981 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.013 5.233 8.581 10.102 hybrid contribution -1.680 0.322 -0.194 1.721 sum -0.667 5.555 8.388 10.082 Atomic orbital electron populations 1.23183 0.80050 1.01854 1.01494 1.86044 1.19154 1.23680 1.93880 1.18848 0.98799 0.87611 0.90780 1.18693 1.01733 0.92240 0.84963 1.84846 1.33614 1.73884 1.37450 1.19860 1.03081 0.94414 0.95865 1.20558 1.01226 0.99282 0.94800 1.20850 1.01334 0.99654 0.91821 1.21217 1.00046 0.95192 0.97933 1.20963 0.93033 0.93301 0.96309 1.17180 0.95732 0.91446 0.85507 1.21889 0.95464 0.98967 1.02545 1.21878 0.95275 0.98108 1.03140 1.20943 0.90214 1.32077 1.10038 0.92573 1.24856 0.97073 0.95333 0.96063 1.69840 1.32824 1.33687 1.15623 0.86719 0.85930 0.77509 0.78531 1.20767 1.21157 1.19994 0.90057 0.90324 0.96302 0.77133 0.92160 0.91482 0.92051 0.86519 0.85333 0.96800 0.90245 0.95210 0.93017 0.89811 0.98119 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.72 101.05 1.08 1.62 16 2 O -0.31 -6.83 7.19 -34.18 -0.25 -7.08 16 3 C 0.08 1.79 5.37 -39.12 -0.21 1.58 16 4 C 0.07 1.28 6.69 -39.12 -0.26 1.02 16 5 O -0.49 -8.10 12.33 -34.18 -0.42 -8.52 16 6 C -0.13 -2.19 5.89 -104.50 -0.62 -2.81 16 7 C -0.10 -1.31 9.79 36.01 0.35 -0.95 16 8 C -0.12 -1.98 9.70 -39.57 -0.38 -2.36 16 9 C -0.13 -2.43 8.99 -39.58 -0.36 -2.78 16 10 C -0.04 -0.78 4.70 -104.50 -0.49 -1.27 16 11 C 0.10 2.45 0.48 -156.81 -0.08 2.37 16 12 C -0.13 -3.04 6.96 37.16 0.26 -2.78 16 13 C -0.13 -3.16 7.62 37.16 0.28 -2.88 16 14 C -0.49 -12.62 5.85 -34.44 -0.20 -12.82 16 15 H 0.06 1.43 5.78 -52.48 -0.30 1.13 16 16 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 17 N -0.88 -23.62 9.47 55.43 0.52 -23.09 16 18 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H 0.08 1.72 4.57 -51.93 -0.24 1.48 16 23 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 24 H 0.02 0.30 8.07 -51.93 -0.42 -0.12 16 25 H 0.37 4.53 8.99 45.56 0.41 4.94 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.86 7.53 -51.93 -0.39 0.47 16 28 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 29 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 30 H 0.13 2.34 5.90 -52.49 -0.31 2.03 16 31 H 0.01 0.28 7.77 -51.93 -0.40 -0.12 16 32 H 0.08 2.01 6.41 -51.93 -0.33 1.68 16 33 H 0.03 0.65 7.25 -51.93 -0.38 0.27 16 34 H 0.05 1.32 5.98 -51.93 -0.31 1.01 16 35 H 0.08 2.22 6.04 -51.93 -0.31 1.91 16 36 H 0.00 -0.01 8.13 -51.93 -0.42 -0.43 16 37 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 290.91 15.07 4.38 4.38 Total: -1.00 -28.48 290.91 -5.72 -34.20 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -4.23 Total: 5.28 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -0.71 Total: -20.39 kcal Atomic # 7 Polarization: -23.62 SS G_CDS: 0.52 Total: -23.09 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.67 Total: -15.60 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.48 -5.72 -34.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260117572.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.849 kcal (2) G-P(sol) polarization free energy of solvation -28.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds