Wall clock time and date at job start Mon Mar 30 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35985 * 117.00156 * 2 1 4 4 C 1.39194 * 120.07405 * 82.86546 * 3 2 1 5 5 O 1.35987 * 120.07329 * 359.97438 * 4 3 2 6 6 C 1.38524 * 119.85329 * 179.97438 * 4 3 2 7 7 C 1.50702 * 119.99988 * 179.97438 * 6 4 3 8 8 C 1.38289 * 120.00301 * 0.02562 * 6 4 3 9 9 C 1.38209 * 120.14066 * 359.97027 * 8 6 4 10 10 C 1.38284 * 120.15010 * 0.30621 * 9 8 6 11 11 C 1.50705 * 119.99932 * 179.72248 * 10 9 8 12 12 C 1.52997 * 109.47202 * 5.49498 * 11 10 9 13 13 C 1.53000 * 109.47096 * 125.50243 * 11 10 9 14 14 C 1.50701 * 109.46751 * 245.49658 * 11 10 9 15 15 H 1.08006 * 120.00348 * 4.15697 * 14 11 10 16 16 C 1.37874 * 119.99827 * 184.15090 * 14 11 10 17 17 N 1.31515 * 120.00256 * 0.02562 * 16 14 11 18 18 Si 1.86806 * 119.99914 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.46914 * 90.00119 * 18 16 14 20 20 H 1.48497 * 109.47072 * 210.00091 * 18 16 14 21 21 H 1.48500 * 109.47089 * 330.00419 * 18 16 14 22 22 H 1.08997 * 109.47018 * 65.68738 * 1 2 3 23 23 H 1.08997 * 109.47190 * 185.69421 * 1 2 3 24 24 H 1.09005 * 109.46849 * 305.69293 * 1 2 3 25 25 H 0.96701 * 114.00400 * 270.01976 * 5 4 3 26 26 H 1.09004 * 109.47162 * 270.02332 * 7 6 4 27 27 H 1.08993 * 109.46992 * 30.02242 * 7 6 4 28 28 H 1.08998 * 109.47490 * 150.02710 * 7 6 4 29 29 H 1.07999 * 119.93099 * 180.02562 * 8 6 4 30 30 H 1.08001 * 119.92254 * 180.02562 * 9 8 6 31 31 H 1.09003 * 109.47017 * 60.00782 * 12 11 10 32 32 H 1.08998 * 109.46854 * 179.97438 * 12 11 10 33 33 H 1.08999 * 109.47557 * 300.00138 * 12 11 10 34 34 H 1.08997 * 109.47304 * 67.67041 * 13 11 10 35 35 H 1.08999 * 109.46842 * 187.67297 * 13 11 10 36 36 H 1.09003 * 109.47076 * 307.66261 * 13 11 10 37 37 H 0.96996 * 119.99949 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 2.2298 1.9010 1.1952 5 8 1.7915 1.3647 2.3655 6 6 2.8598 3.1347 1.1900 7 6 3.0596 3.8843 2.4821 8 6 3.3045 3.6791 -0.0009 9 6 3.1224 2.9944 -1.1877 10 6 2.4892 1.7651 -1.1902 11 6 2.2869 1.0244 -2.4870 12 6 2.9883 1.7774 -3.6192 13 6 2.8765 -0.3825 -2.3681 14 6 0.8130 0.9276 -2.7855 15 1 0.0980 1.4167 -2.1404 16 6 0.3771 0.2149 -3.8822 17 7 1.2475 -0.3810 -4.6676 18 14 -1.4500 0.0956 -4.2527 19 1 -1.8505 1.2204 -5.1357 20 1 -1.7339 -1.1933 -4.9333 21 1 -2.2180 0.1649 -2.9836 22 1 -0.3633 0.4231 -0.9365 23 1 -0.3633 -1.0226 0.1020 24 1 -0.3633 0.5996 0.8347 25 1 0.8838 1.6075 2.5939 26 1 2.1992 4.5280 2.6655 27 1 3.1630 3.1737 3.3020 28 1 3.9608 4.4934 2.4132 29 1 3.7959 4.6408 -0.0036 30 1 3.4715 3.4226 -2.1157 31 1 4.0544 1.8473 -3.4033 32 1 2.8423 1.2414 -4.5570 33 1 2.5682 2.7796 -3.7039 34 1 2.2891 -0.9637 -1.6574 35 1 2.8535 -0.8696 -3.3429 36 1 3.9072 -0.3162 -2.0194 37 1 0.9408 -0.8828 -5.4390 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260117572.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:20 Heat of formation + Delta-G solvation = -73.969014 kcal Electronic energy + Delta-G solvation = -19495.783652 eV Core-core repulsion = 16624.147443 eV Total energy + Delta-G solvation = -2871.636208 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.41745 -38.56989 -38.06913 -36.43907 -33.72352 -31.77344 -30.49346 -27.94543 -27.59809 -27.24722 -26.73976 -23.06214 -22.74852 -20.90568 -18.86080 -18.26963 -18.02320 -17.00525 -16.80083 -16.32311 -15.76106 -15.35678 -14.96007 -14.78470 -14.33493 -14.11915 -13.73079 -13.39596 -13.16010 -13.09314 -12.87876 -12.76407 -12.61605 -12.34128 -12.33253 -12.16058 -12.02348 -11.90941 -11.50976 -11.05527 -10.69141 -10.36519 -10.21465 -9.33436 -9.10787 -7.95093 -6.08380 0.35828 0.49615 1.41444 1.44464 1.50888 2.45392 2.67613 3.15566 3.29230 3.33956 4.04181 4.17601 4.42724 4.47641 4.52005 4.66265 4.74893 4.84590 4.88688 4.90095 4.94336 5.05088 5.09161 5.11722 5.17176 5.36135 5.49832 5.54466 5.59456 5.67401 5.73340 5.80548 5.98085 6.23819 6.24757 6.47860 6.63050 6.92287 7.03996 7.54968 9.04444 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.026708 B = 0.008486 C = 0.007453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.140243 B = 3298.756179 C = 3756.111121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.335 6.335 3 C 0.058 3.942 4 C 0.066 3.934 5 O -0.494 6.494 6 C -0.125 4.125 7 C -0.098 4.098 8 C -0.110 4.110 9 C -0.135 4.135 10 C -0.069 4.069 11 C 0.096 3.904 12 C -0.121 4.121 13 C -0.114 4.114 14 C -0.494 4.494 15 H 0.052 0.948 16 C 0.025 3.975 17 N -0.907 5.907 18 Si 0.936 3.064 19 H -0.281 1.281 20 H -0.289 1.289 21 H -0.265 1.265 22 H 0.055 0.945 23 H 0.091 0.909 24 H 0.047 0.953 25 H 0.395 0.605 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.155 0.845 30 H 0.133 0.867 31 H 0.027 0.973 32 H 0.052 0.948 33 H 0.035 0.965 34 H 0.037 0.963 35 H 0.061 0.939 36 H 0.002 0.998 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.239 7.743 10.744 13.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.252 6.252 3 C 0.014 3.986 4 C 0.021 3.979 5 O -0.305 6.305 6 C -0.126 4.126 7 C -0.155 4.155 8 C -0.128 4.128 9 C -0.153 4.153 10 C -0.070 4.070 11 C 0.096 3.904 12 C -0.178 4.178 13 C -0.171 4.171 14 C -0.532 4.532 15 H 0.070 0.930 16 C -0.174 4.174 17 N -0.546 5.546 18 Si 0.763 3.237 19 H -0.207 1.207 20 H -0.215 1.215 21 H -0.190 1.190 22 H 0.074 0.926 23 H 0.109 0.891 24 H 0.066 0.934 25 H 0.252 0.748 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.173 0.827 30 H 0.151 0.849 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.021 0.979 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.871 7.192 10.615 12.851 hybrid contribution -1.618 -0.249 -0.708 1.784 sum -0.747 6.943 9.906 12.120 Atomic orbital electron populations 1.23206 0.79138 1.03017 1.01287 1.85993 1.20350 1.24751 1.94068 1.19113 0.99788 0.87892 0.91808 1.18752 1.01934 0.92657 0.84589 1.84789 1.35272 1.74126 1.36279 1.20335 1.00939 0.93633 0.97667 1.20631 1.03152 0.99350 0.92331 1.21225 1.00204 1.00650 0.90683 1.21349 1.00018 0.94481 0.99455 1.20839 0.95877 0.94808 0.95482 1.17121 0.94933 0.91092 0.87298 1.21737 0.96361 0.98703 1.01019 1.21711 0.95205 0.98960 1.01243 1.21147 0.91206 1.31304 1.09532 0.92973 1.25471 1.00287 0.95449 0.96208 1.69974 1.34134 1.34525 1.15974 0.85901 0.82252 0.77069 0.78495 1.20703 1.21504 1.18984 0.92620 0.89104 0.93419 0.74782 0.90061 0.91519 0.89947 0.82724 0.84880 0.95408 0.92878 0.94587 0.94366 0.92015 0.97918 0.93381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.02 10.72 113.37 1.22 2.24 16 2 O -0.33 -14.73 7.19 -79.54 -0.57 -15.30 16 3 C 0.06 2.44 5.37 22.57 0.12 2.56 16 4 C 0.07 2.31 6.69 22.57 0.15 2.46 16 5 O -0.49 -15.04 12.33 -79.56 -0.98 -16.03 16 6 C -0.13 -3.72 5.89 -19.78 -0.12 -3.84 16 7 C -0.10 -2.05 9.79 71.24 0.70 -1.35 16 8 C -0.11 -3.28 9.70 22.27 0.22 -3.06 16 9 C -0.14 -4.98 8.99 22.27 0.20 -4.78 16 10 C -0.07 -3.04 4.70 -19.78 -0.09 -3.13 16 11 C 0.10 4.69 0.48 -53.67 -0.03 4.67 16 12 C -0.12 -5.66 6.96 71.98 0.50 -5.16 16 13 C -0.11 -5.86 7.62 71.98 0.55 -5.31 16 14 C -0.49 -25.60 5.85 25.60 0.15 -25.45 16 15 H 0.05 2.70 5.78 -2.91 -0.02 2.69 16 16 C 0.02 1.29 5.15 84.65 0.44 1.73 16 17 N -0.91 -50.06 9.47 21.45 0.20 -49.85 16 18 Si 0.94 42.02 29.54 68.60 2.03 44.04 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 22 H 0.06 2.37 4.57 -2.39 -0.01 2.36 16 23 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 24 H 0.05 1.46 8.07 -2.38 -0.02 1.44 16 25 H 0.40 8.36 8.99 -74.06 -0.67 7.69 16 26 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.07 1.43 7.53 -2.39 -0.02 1.41 16 28 H 0.08 1.41 8.09 -2.39 -0.02 1.39 16 29 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 30 H 0.13 4.65 5.90 -2.91 -0.02 4.63 16 31 H 0.03 1.17 7.77 -2.39 -0.02 1.15 16 32 H 0.05 2.75 6.41 -2.39 -0.02 2.74 16 33 H 0.04 1.58 7.25 -2.39 -0.02 1.56 16 34 H 0.04 2.01 5.98 -2.39 -0.01 2.00 16 35 H 0.06 3.41 6.04 -2.39 -0.01 3.40 16 36 H 0.00 0.09 8.13 -2.39 -0.02 0.07 16 37 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -62.16 290.91 5.10 -57.06 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.42 Total: 18.51 kcal Atomic # 6 Polarization: -42.43 SS G_CDS: 4.00 Total: -38.43 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.20 Total: -49.85 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -1.55 Total: -31.33 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -62.16 5.10 -57.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260117572.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.912 kcal (2) G-P(sol) polarization free energy of solvation -62.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds