Wall clock time and date at job start Mon Mar 30 2020 05:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35990 * 117.00306 * 2 1 4 4 C 1.38567 * 120.07231 * 89.99745 * 3 2 1 5 5 C 1.50705 * 120.00003 * 0.02562 * 4 3 2 6 6 C 1.38233 * 120.00014 * 180.02562 * 4 3 2 7 7 C 1.38251 * 120.14958 * 359.97438 * 6 4 3 8 8 C 1.38245 * 120.14567 * 0.02562 * 7 6 4 9 9 C 1.50702 * 120.00231 * 179.72956 * 8 7 6 10 10 C 1.52999 * 109.46809 * 264.99827 * 9 8 7 11 11 C 1.50702 * 109.47188 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99643 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99728 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00595 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99541 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47041 * 90.00017 * 15 13 11 17 17 H 1.48492 * 109.47059 * 209.99820 * 15 13 11 18 18 H 1.48502 * 109.47232 * 330.00325 * 15 13 11 19 19 C 1.38570 * 119.99723 * 359.97438 * 8 7 6 20 20 O 1.35993 * 120.07263 * 180.02562 * 19 8 7 21 21 C 1.42895 * 116.99894 * 90.00136 * 20 19 8 22 22 H 1.09007 * 109.47201 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47058 * 299.99594 * 1 2 3 24 24 H 1.08998 * 109.47489 * 59.99661 * 1 2 3 25 25 H 1.09000 * 109.46798 * 270.01937 * 5 4 3 26 26 H 1.08998 * 109.46977 * 30.01737 * 5 4 3 27 27 H 1.09000 * 109.47026 * 150.02022 * 5 4 3 28 28 H 1.08007 * 119.92692 * 180.02562 * 6 4 3 29 29 H 1.08004 * 119.93007 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47209 * 24.99839 * 9 8 7 31 31 H 1.08995 * 109.47185 * 145.00010 * 9 8 7 32 32 H 1.09003 * 109.46971 * 300.00258 * 10 9 8 33 33 H 1.09000 * 109.47519 * 59.99991 * 10 9 8 34 34 H 0.96995 * 120.00017 * 179.97438 * 14 13 11 35 35 H 1.08997 * 109.47464 * 300.00270 * 21 20 19 36 36 H 1.09001 * 109.47308 * 60.00243 * 21 20 19 37 37 H 1.08998 * 109.47164 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 2.3616 1.8303 1.1992 5 6 2.0207 1.1602 2.5052 6 6 2.9888 3.0622 1.1974 7 6 3.3034 3.6795 0.0011 8 6 2.9918 3.0678 -1.1989 9 6 3.3307 3.7464 -2.5011 10 6 2.1133 4.5262 -3.0017 11 6 2.4524 5.2054 -4.3036 12 1 3.4375 5.0917 -4.7313 13 6 1.5049 5.9718 -4.9485 14 7 0.3054 6.1106 -4.4274 15 14 1.9254 6.8142 -6.5619 16 1 1.6018 5.9076 -7.6927 17 1 1.1348 8.0647 -6.6881 18 1 3.3741 7.1397 -6.5875 19 6 2.3631 1.8329 -1.2042 20 8 2.0562 1.2295 -2.3837 21 6 3.0445 0.3640 -2.9459 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.0226 1.4646 2.8201 26 1 2.0467 0.0782 2.3761 27 1 2.7463 1.4531 3.2641 28 1 3.2343 3.5432 2.1328 29 1 3.7938 4.6418 0.0038 30 1 4.1636 4.4324 -2.3472 31 1 3.6102 2.9955 -3.2401 32 1 1.2804 3.8401 -3.1554 33 1 1.8337 5.2771 -2.2627 34 1 -0.3610 6.6500 -4.8809 35 1 3.9573 0.9290 -3.1347 36 1 3.2566 -0.4466 -2.2488 37 1 2.6733 -0.0510 -3.8830 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260120413.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:22 Heat of formation + Delta-G solvation = -67.529143 kcal Electronic energy + Delta-G solvation = -18538.977098 eV Core-core repulsion = 15667.620143 eV Total energy + Delta-G solvation = -2871.356955 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.26458 -37.67491 -36.87812 -34.08534 -32.42985 -30.25045 -29.64790 -27.36082 -26.69105 -26.06549 -24.10720 -21.97939 -21.44842 -20.09273 -17.23872 -16.85255 -16.51915 -16.11635 -15.61595 -14.79636 -14.43330 -14.39258 -14.28777 -13.51403 -13.35492 -13.00779 -12.68578 -12.37537 -12.19294 -12.07016 -11.72950 -11.58109 -11.31907 -11.04320 -10.91220 -10.74792 -10.53713 -10.18940 -9.81581 -9.59112 -9.25953 -8.99990 -8.31239 -8.23436 -7.97146 -5.95297 -3.97962 1.38226 1.54747 3.34307 3.40203 3.43242 3.54838 4.02452 4.34136 4.49293 5.00897 5.15211 5.36401 5.40286 5.43015 5.47432 5.57680 5.59265 5.61536 5.63286 5.66085 5.77347 5.84644 5.87718 5.96173 6.20574 6.31664 6.61712 6.66244 6.66908 6.89522 6.96513 7.12610 7.51219 7.73249 7.90113 8.02940 8.05995 8.45274 9.08814 9.65303 11.15912 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028319 B = 0.005605 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.481484 B = 4994.686139 C = 5284.426193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.334 6.334 3 C 0.072 3.928 4 C -0.114 4.114 5 C -0.105 4.105 6 C -0.113 4.113 7 C -0.111 4.111 8 C -0.070 4.070 9 C -0.074 4.074 10 C 0.033 3.967 11 C -0.519 4.519 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.083 3.917 20 O -0.321 6.321 21 C 0.041 3.959 22 H 0.088 0.912 23 H 0.042 0.958 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.023 0.977 33 H 0.015 0.985 34 H 0.260 0.740 35 H 0.045 0.955 36 H 0.042 0.958 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.741 -10.975 11.297 16.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.251 6.251 3 C 0.028 3.972 4 C -0.115 4.115 5 C -0.162 4.162 6 C -0.132 4.132 7 C -0.129 4.129 8 C -0.070 4.070 9 C -0.111 4.111 10 C -0.004 4.004 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C 0.039 3.961 20 O -0.238 6.238 21 C -0.053 4.053 22 H 0.107 0.893 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.142 0.858 29 H 0.146 0.854 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.041 0.959 33 H 0.033 0.967 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.484 -11.057 11.158 16.090 hybrid contribution 0.089 0.680 -0.874 1.111 sum 3.572 -10.377 10.284 15.040 Atomic orbital electron populations 1.22944 0.79094 1.02563 1.00980 1.85910 1.19834 1.24923 1.94390 1.18840 1.00069 0.86782 0.91462 1.19949 1.01709 0.95365 0.94450 1.20619 1.01332 1.00769 0.93457 1.20890 0.99733 0.94373 0.98163 1.21040 1.00644 0.99952 0.91228 1.20664 0.95316 0.93562 0.97472 1.20760 1.01204 0.98315 0.90812 1.19040 0.91567 0.94318 0.95448 1.21232 0.98292 1.29743 1.06497 0.92714 1.25008 0.95037 0.96636 0.97676 1.69975 1.04020 1.40183 1.39173 0.86611 0.78349 0.79020 0.84107 1.20677 1.21256 1.19893 1.18885 1.00266 0.92188 0.84789 1.86066 1.41336 1.61849 1.34501 1.22904 0.91950 0.92332 0.98138 0.89314 0.93971 0.92922 0.91726 0.91247 0.91675 0.85807 0.85364 0.92241 0.92090 0.95894 0.96686 0.93046 0.93662 0.93953 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 11.13 101.05 1.12 1.63 16 2 O -0.33 -5.29 9.25 -34.21 -0.32 -5.61 16 3 C 0.07 1.24 5.71 -39.12 -0.22 1.01 16 4 C -0.11 -1.71 5.89 -104.50 -0.62 -2.32 16 5 C -0.11 -1.20 9.79 36.01 0.35 -0.84 16 6 C -0.11 -1.65 9.69 -39.58 -0.38 -2.04 16 7 C -0.11 -1.85 9.67 -39.57 -0.38 -2.23 16 8 C -0.07 -1.35 5.14 -104.50 -0.54 -1.89 16 9 C -0.07 -1.60 5.00 -27.88 -0.14 -1.74 16 10 C 0.03 0.90 4.95 -27.88 -0.14 0.76 16 11 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -27.49 13.29 55.43 0.74 -26.76 16 15 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 C 0.08 1.59 5.71 -39.12 -0.22 1.37 16 20 O -0.32 -6.32 9.47 -34.22 -0.32 -6.65 16 21 C 0.04 0.63 10.80 101.05 1.09 1.72 16 22 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.79 7.53 -51.93 -0.39 0.40 16 27 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 28 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 29 H 0.13 1.95 8.06 -52.48 -0.42 1.52 16 30 H 0.06 1.21 8.05 -51.93 -0.42 0.80 16 31 H 0.06 1.31 6.44 -51.93 -0.33 0.97 16 32 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.04 0.68 7.19 -51.93 -0.37 0.30 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 315.53 15.07 4.75 4.75 Total: -1.00 -32.59 315.53 -6.36 -38.96 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -5.71 Total: -3.31 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: -0.49 Total: -18.29 kcal Atomic # 7 Polarization: -27.49 SS G_CDS: 0.74 Total: -26.76 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -0.64 Total: -12.26 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.59 -6.36 -38.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260120413.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.572 kcal (2) G-P(sol) polarization free energy of solvation -32.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds