Wall clock time and date at job start Mon Mar 30 2020 05:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35990 * 117.00306 * 2 1 4 4 C 1.38567 * 120.07231 * 89.99745 * 3 2 1 5 5 C 1.50705 * 120.00003 * 0.02562 * 4 3 2 6 6 C 1.38233 * 120.00014 * 180.02562 * 4 3 2 7 7 C 1.38251 * 120.14958 * 359.97438 * 6 4 3 8 8 C 1.38245 * 120.14567 * 0.02562 * 7 6 4 9 9 C 1.50702 * 120.00231 * 179.72956 * 8 7 6 10 10 C 1.52999 * 109.46809 * 264.99827 * 9 8 7 11 11 C 1.50702 * 109.47188 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99643 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99728 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00595 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99541 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47041 * 90.00017 * 15 13 11 17 17 H 1.48492 * 109.47059 * 209.99820 * 15 13 11 18 18 H 1.48502 * 109.47232 * 330.00325 * 15 13 11 19 19 C 1.38570 * 119.99723 * 359.97438 * 8 7 6 20 20 O 1.35993 * 120.07263 * 180.02562 * 19 8 7 21 21 C 1.42895 * 116.99894 * 90.00136 * 20 19 8 22 22 H 1.09007 * 109.47201 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47058 * 299.99594 * 1 2 3 24 24 H 1.08998 * 109.47489 * 59.99661 * 1 2 3 25 25 H 1.09000 * 109.46798 * 270.01937 * 5 4 3 26 26 H 1.08998 * 109.46977 * 30.01737 * 5 4 3 27 27 H 1.09000 * 109.47026 * 150.02022 * 5 4 3 28 28 H 1.08007 * 119.92692 * 180.02562 * 6 4 3 29 29 H 1.08004 * 119.93007 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47209 * 24.99839 * 9 8 7 31 31 H 1.08995 * 109.47185 * 145.00010 * 9 8 7 32 32 H 1.09003 * 109.46971 * 300.00258 * 10 9 8 33 33 H 1.09000 * 109.47519 * 59.99991 * 10 9 8 34 34 H 0.96995 * 120.00017 * 179.97438 * 14 13 11 35 35 H 1.08997 * 109.47464 * 300.00270 * 21 20 19 36 36 H 1.09001 * 109.47308 * 60.00243 * 21 20 19 37 37 H 1.08998 * 109.47164 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 2.3616 1.8303 1.1992 5 6 2.0207 1.1602 2.5052 6 6 2.9888 3.0622 1.1974 7 6 3.3034 3.6795 0.0011 8 6 2.9918 3.0678 -1.1989 9 6 3.3307 3.7464 -2.5011 10 6 2.1133 4.5262 -3.0017 11 6 2.4524 5.2054 -4.3036 12 1 3.4375 5.0917 -4.7313 13 6 1.5049 5.9718 -4.9485 14 7 0.3054 6.1106 -4.4274 15 14 1.9254 6.8142 -6.5619 16 1 1.6018 5.9076 -7.6927 17 1 1.1348 8.0647 -6.6881 18 1 3.3741 7.1397 -6.5875 19 6 2.3631 1.8329 -1.2042 20 8 2.0562 1.2295 -2.3837 21 6 3.0445 0.3640 -2.9459 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.0226 1.4646 2.8201 26 1 2.0467 0.0782 2.3761 27 1 2.7463 1.4531 3.2641 28 1 3.2343 3.5432 2.1328 29 1 3.7938 4.6418 0.0038 30 1 4.1636 4.4324 -2.3472 31 1 3.6102 2.9955 -3.2401 32 1 1.2804 3.8401 -3.1554 33 1 1.8337 5.2771 -2.2627 34 1 -0.3610 6.6500 -4.8809 35 1 3.9573 0.9290 -3.1347 36 1 3.2566 -0.4466 -2.2488 37 1 2.6733 -0.0510 -3.8830 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260120413.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:21 Heat of formation + Delta-G solvation = -86.743710 kcal Electronic energy + Delta-G solvation = -18539.810304 eV Core-core repulsion = 15667.620143 eV Total energy + Delta-G solvation = -2872.190161 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.55020 -38.96482 -38.17226 -35.92850 -34.21124 -31.87759 -30.89371 -28.67459 -28.18319 -27.27453 -25.81730 -23.26086 -23.17089 -21.61900 -18.72655 -18.38436 -18.07437 -17.65735 -16.88459 -16.51543 -16.02693 -15.63900 -15.49923 -14.86319 -14.61768 -14.40803 -14.31572 -14.10715 -13.51005 -13.29701 -12.98495 -12.95180 -12.84271 -12.77123 -12.40529 -12.25460 -12.17595 -11.81741 -11.53743 -11.35632 -11.23369 -10.58107 -10.49129 -9.51576 -9.33550 -8.19623 -6.32138 0.11853 0.25315 1.39165 1.41404 1.52477 2.30269 2.41603 2.79739 3.05957 3.13036 3.83050 3.98206 4.22850 4.26878 4.34763 4.40233 4.44002 4.44752 4.49117 4.59037 4.67843 4.70918 4.76200 4.81538 4.85047 4.87447 5.13101 5.26875 5.33006 5.42147 5.48390 5.52043 5.71850 5.80108 5.83457 6.21708 6.27980 6.72390 6.84466 7.36999 8.92360 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028319 B = 0.005605 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.481484 B = 4994.686139 C = 5284.426193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.341 6.341 3 C 0.059 3.941 4 C -0.108 4.108 5 C -0.102 4.102 6 C -0.106 4.106 7 C -0.115 4.115 8 C -0.104 4.104 9 C -0.058 4.058 10 C 0.045 3.955 11 C -0.542 4.542 12 H 0.062 0.938 13 C -0.001 4.001 14 N -0.935 5.935 15 Si 0.968 3.032 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.260 1.260 19 C 0.062 3.938 20 O -0.352 6.352 21 C 0.038 3.962 22 H 0.120 0.880 23 H 0.056 0.944 24 H 0.027 0.973 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.164 0.836 29 H 0.140 0.860 30 H 0.069 0.931 31 H 0.056 0.944 32 H -0.017 1.017 33 H -0.012 1.012 34 H 0.263 0.737 35 H 0.044 0.956 36 H 0.054 0.946 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.620 -11.237 12.517 17.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.258 6.258 3 C 0.015 3.985 4 C -0.108 4.108 5 C -0.159 4.159 6 C -0.124 4.124 7 C -0.133 4.133 8 C -0.105 4.105 9 C -0.095 4.095 10 C 0.008 3.992 11 C -0.580 4.580 12 H 0.081 0.919 13 C -0.198 4.198 14 N -0.575 5.575 15 Si 0.792 3.208 16 H -0.199 1.199 17 H -0.206 1.206 18 H -0.184 1.184 19 C 0.018 3.982 20 O -0.270 6.270 21 C -0.055 4.055 22 H 0.138 0.862 23 H 0.075 0.925 24 H 0.046 0.954 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.109 0.891 28 H 0.182 0.818 29 H 0.158 0.842 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.001 0.999 33 H 0.007 0.993 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.378 -11.333 12.385 17.349 hybrid contribution -0.234 0.689 -1.176 1.383 sum 4.143 -10.644 11.209 16.003 Atomic orbital electron populations 1.23119 0.77770 1.04484 1.00445 1.85889 1.21091 1.24409 1.94377 1.19003 1.00579 0.87389 0.91537 1.20433 0.99907 0.95243 0.95237 1.20708 1.02795 1.00489 0.91887 1.21296 0.98265 0.94059 0.98770 1.21273 1.00431 1.00423 0.91200 1.20551 0.98191 0.94479 0.97235 1.20428 0.98892 0.97850 0.92320 1.18812 0.92615 0.93186 0.94613 1.21672 0.98807 1.30108 1.07425 0.91942 1.26019 0.94715 0.97270 1.01828 1.70124 1.05254 1.41009 1.41112 0.85407 0.78784 0.77781 0.78823 1.19856 1.20618 1.18393 1.19179 1.00962 0.92624 0.85427 1.86001 1.42988 1.62631 1.35330 1.23067 0.91370 0.92139 0.98971 0.86212 0.92510 0.95422 0.90383 0.91165 0.89072 0.81838 0.84196 0.91265 0.92542 0.99852 0.99341 0.92788 0.93743 0.92701 0.87650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.90 11.13 113.37 1.26 2.16 16 2 O -0.34 -10.52 9.25 -79.57 -0.74 -11.26 16 3 C 0.06 1.98 5.71 22.57 0.13 2.11 16 4 C -0.11 -2.97 5.89 -19.79 -0.12 -3.09 16 5 C -0.10 -1.95 9.79 71.24 0.70 -1.26 16 6 C -0.11 -2.82 9.69 22.27 0.22 -2.61 16 7 C -0.12 -3.78 9.67 22.27 0.22 -3.56 16 8 C -0.10 -4.14 5.14 -19.78 -0.10 -4.25 16 9 C -0.06 -2.59 5.00 29.85 0.15 -2.45 16 10 C 0.04 2.54 4.95 29.85 0.15 2.69 16 11 C -0.54 -32.10 9.11 25.60 0.23 -31.86 16 12 H 0.06 3.51 7.74 -2.91 -0.02 3.48 16 13 C 0.00 -0.05 5.46 84.66 0.46 0.42 16 14 N -0.93 -59.06 13.29 21.45 0.28 -58.77 16 15 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 16 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 18 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 19 C 0.06 2.44 5.71 22.57 0.13 2.57 16 20 O -0.35 -14.48 9.47 -79.60 -0.75 -15.24 16 21 C 0.04 1.20 10.80 113.37 1.22 2.43 16 22 H 0.12 2.21 8.14 -2.38 -0.02 2.19 16 23 H 0.06 1.24 8.14 -2.38 -0.02 1.23 16 24 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.07 1.36 7.53 -2.39 -0.02 1.34 16 27 H 0.09 1.30 8.09 -2.39 -0.02 1.28 16 28 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 29 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 30 H 0.07 2.89 8.05 -2.39 -0.02 2.87 16 31 H 0.06 2.52 6.44 -2.39 -0.02 2.51 16 32 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 33 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 34 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 35 H 0.04 1.37 7.19 -2.39 -0.02 1.35 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -72.89 315.53 6.51 -66.39 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 1.04 Total: 8.27 kcal Atomic # 6 Polarization: -41.35 SS G_CDS: 4.65 Total: -36.70 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 0.28 Total: -58.77 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -1.49 Total: -26.49 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -72.89 6.51 -66.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260120413.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.355 kcal (2) G-P(sol) polarization free energy of solvation -72.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds