Wall clock time and date at job start Mon Mar 30 2020 05:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35994 * 117.00264 * 2 1 4 4 C 1.38568 * 120.07031 * 359.97438 * 3 2 1 5 5 C 1.38241 * 119.99472 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.92528 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47491 * 89.99435 * 6 5 4 8 8 C 1.50702 * 109.47159 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72211 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48496 * 109.47341 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46983 * 120.00379 * 12 10 8 15 15 H 1.48503 * 109.47491 * 240.00192 * 12 10 8 16 16 C 1.38251 * 120.14852 * 0.26889 * 5 4 3 17 17 C 1.38239 * 120.14515 * 359.45768 * 16 5 4 18 18 C 1.50706 * 119.99795 * 180.27075 * 17 16 5 19 19 C 1.38560 * 120.00232 * 0.54810 * 17 16 5 20 20 O 1.35995 * 120.07631 * 179.74997 * 19 17 16 21 21 C 1.42897 * 116.99806 * 269.97137 * 20 19 17 22 22 H 1.09000 * 109.47466 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47283 * 300.00051 * 1 2 3 24 24 H 1.08996 * 109.47404 * 60.00148 * 1 2 3 25 25 H 1.08000 * 119.99929 * 0.02562 * 4 3 2 26 26 H 1.09004 * 109.46801 * 329.99473 * 6 5 4 27 27 H 1.09000 * 109.47461 * 210.00006 * 6 5 4 28 28 H 1.09004 * 109.47066 * 60.00201 * 7 6 5 29 29 H 1.08994 * 109.47405 * 300.00031 * 7 6 5 30 30 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 31 31 H 1.08002 * 119.92576 * 179.72491 * 16 5 4 32 32 H 1.09008 * 109.47256 * 270.26941 * 18 17 16 33 33 H 1.08995 * 109.46897 * 30.27320 * 18 17 16 34 34 H 1.09001 * 109.46861 * 150.27606 * 18 17 16 35 35 H 1.08998 * 109.47495 * 300.00084 * 21 20 19 36 36 H 1.08998 * 109.47037 * 59.99761 * 21 20 19 37 37 H 1.08997 * 109.47209 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9225 3.6057 0.0000 6 6 1.1018 4.8696 0.0000 7 6 0.8233 5.2969 1.4424 8 6 0.0032 6.5612 1.4423 9 1 -0.2905 7.0144 0.5070 10 6 -0.3776 7.1360 2.6364 11 7 -0.0203 6.5840 3.7754 12 14 -1.4007 8.6989 2.6362 13 1 -1.6686 9.1150 1.2362 14 1 -2.6882 8.4478 3.3325 15 1 -0.6593 9.7761 3.3400 16 6 3.3030 3.6797 -0.0045 17 6 4.0603 2.5232 0.0017 18 6 5.5650 2.6078 0.0029 19 6 3.4360 1.2862 0.0010 20 8 4.1795 0.1475 0.0020 21 6 4.5352 -0.3960 -1.2708 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 0.2146 2.3196 -0.0005 26 1 0.1577 4.6897 -0.5143 27 1 1.6505 5.6591 -0.5134 28 1 1.7674 5.4768 1.9568 29 1 0.2746 4.5075 1.9558 30 1 -0.2879 6.9886 4.6154 31 1 3.7909 4.6432 -0.0086 32 1 5.9286 2.6283 -1.0246 33 1 5.8773 3.5168 0.5170 34 1 5.9772 1.7396 0.5169 35 1 3.6304 -0.6376 -1.8285 36 1 5.1206 0.3356 -1.8276 37 1 5.1263 -1.3005 -1.1272 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260123974.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:24 Heat of formation + Delta-G solvation = -71.031366 kcal Electronic energy + Delta-G solvation = -18127.366928 eV Core-core repulsion = 15255.858105 eV Total energy + Delta-G solvation = -2871.508822 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.33625 -38.03508 -37.16380 -33.95221 -32.36692 -31.01359 -28.97710 -27.32379 -27.20542 -26.12599 -24.55779 -21.94904 -21.30079 -19.82388 -17.75398 -16.82581 -16.62665 -16.25287 -15.84776 -15.02957 -14.50183 -14.46727 -13.98285 -13.63980 -13.44202 -13.28693 -12.69652 -12.54618 -12.08714 -11.97042 -11.85866 -11.65299 -11.41794 -11.28622 -10.99375 -10.94160 -10.50440 -10.42413 -9.87360 -9.79200 -9.51216 -9.10509 -8.37843 -8.18873 -7.73219 -6.01627 -4.05109 1.48913 1.69263 3.29642 3.37237 3.38943 3.41089 3.71948 4.17266 4.44477 5.00542 5.11309 5.26341 5.29469 5.31857 5.33956 5.37634 5.42062 5.54663 5.57966 5.63442 5.66743 5.71450 5.85391 5.96912 6.20418 6.29952 6.53533 6.59825 6.70116 6.86654 7.05358 7.09562 7.31469 7.65740 7.78528 7.86872 7.97868 8.37707 9.02070 9.59147 11.09369 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.029622 B = 0.004920 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.014109 B = 5689.890972 C = 6273.060226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.312 6.312 3 C 0.114 3.886 4 C -0.203 4.203 5 C -0.016 4.016 6 C -0.081 4.081 7 C 0.030 3.970 8 C -0.523 4.523 9 H 0.057 0.943 10 C 0.057 3.943 11 N -0.893 5.893 12 Si 0.892 3.108 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.145 4.145 17 C -0.065 4.065 18 C -0.109 4.109 19 C 0.037 3.963 20 O -0.323 6.323 21 C 0.036 3.964 22 H 0.096 0.904 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.131 0.869 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.019 0.981 29 H 0.017 0.983 30 H 0.260 0.740 31 H 0.128 0.872 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.040 0.960 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.535 -12.086 -10.103 17.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.226 6.226 3 C 0.069 3.931 4 C -0.221 4.221 5 C -0.016 4.016 6 C -0.118 4.118 7 C -0.007 4.007 8 C -0.561 4.561 9 H 0.075 0.925 10 C -0.144 4.144 11 N -0.532 5.532 12 Si 0.720 3.280 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.164 4.164 17 C -0.066 4.066 18 C -0.165 4.165 19 C -0.007 4.007 20 O -0.239 6.239 21 C -0.059 4.059 22 H 0.114 0.886 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.149 0.851 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.038 0.962 29 H 0.035 0.965 30 H 0.070 0.930 31 H 0.146 0.854 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.666 -12.366 -9.763 17.108 hybrid contribution -1.005 1.046 -0.020 1.451 sum 5.660 -11.320 -9.782 15.996 Atomic orbital electron populations 1.23058 0.78729 1.03465 1.01757 1.86089 1.21045 1.26616 1.88827 1.19347 0.91403 0.84657 0.97720 1.21072 1.00099 0.91301 1.09671 1.20205 0.93912 0.95461 0.92023 1.20882 0.97303 0.91655 1.01991 1.19076 0.97065 0.96071 0.88491 1.21281 1.33197 1.09230 0.92389 0.92510 1.25028 0.96230 0.97491 0.95642 1.69988 1.46046 1.39925 0.97273 0.86540 0.80051 0.83347 0.78086 1.19711 1.21019 1.20971 1.20815 0.93192 0.97513 1.04845 1.19908 0.96442 0.91464 0.98743 1.20679 0.90734 1.03173 1.01963 1.17609 0.86076 0.86013 1.11010 1.86070 1.70388 1.39041 1.28438 1.22914 0.99426 0.98128 0.85449 0.88571 0.92281 0.92767 0.85129 0.92151 0.91845 0.96249 0.96455 0.93000 0.85445 0.91568 0.91106 0.90988 0.93910 0.94093 0.89466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.31 -4.94 10.28 -34.22 -0.35 -5.29 16 3 C 0.11 1.97 6.70 -39.12 -0.26 1.71 16 4 C -0.20 -3.58 8.69 -39.46 -0.34 -3.92 16 5 C -0.02 -0.30 5.13 -104.62 -0.54 -0.83 16 6 C -0.08 -1.67 5.28 -27.89 -0.15 -1.82 16 7 C 0.03 0.78 4.96 -27.88 -0.14 0.64 16 8 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 9 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 11 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 12 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 13 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 C -0.15 -2.51 9.35 -39.58 -0.37 -2.88 16 17 C -0.07 -1.04 5.89 -104.50 -0.62 -1.66 16 18 C -0.11 -1.36 9.79 36.01 0.35 -1.01 16 19 C 0.04 0.62 5.71 -39.12 -0.22 0.40 16 20 O -0.32 -5.06 9.25 -34.23 -0.32 -5.38 16 21 C 0.04 0.41 11.13 101.05 1.12 1.53 16 22 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.06 0.72 7.66 -51.93 -0.40 0.32 16 24 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 25 H 0.13 2.14 6.30 -52.49 -0.33 1.81 16 26 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 27 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 32 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 33 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 34 H 0.07 0.89 7.53 -51.93 -0.39 0.50 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 315.18 15.07 4.75 4.75 Total: -1.00 -31.96 315.18 -6.48 -38.44 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -5.70 Total: -2.83 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: -0.58 Total: -19.99 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.74 Total: -26.19 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -0.67 Total: -10.66 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.96 -6.48 -38.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260123974.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.590 kcal (2) G-P(sol) polarization free energy of solvation -31.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds