Wall clock time and date at job start Mon Mar 30 2020 05:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35994 * 117.00264 * 2 1 4 4 C 1.38568 * 120.07031 * 359.97438 * 3 2 1 5 5 C 1.38241 * 119.99472 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.92528 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47491 * 89.99435 * 6 5 4 8 8 C 1.50702 * 109.47159 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72211 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48496 * 109.47341 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46983 * 120.00379 * 12 10 8 15 15 H 1.48503 * 109.47491 * 240.00192 * 12 10 8 16 16 C 1.38251 * 120.14852 * 0.26889 * 5 4 3 17 17 C 1.38239 * 120.14515 * 359.45768 * 16 5 4 18 18 C 1.50706 * 119.99795 * 180.27075 * 17 16 5 19 19 C 1.38560 * 120.00232 * 0.54810 * 17 16 5 20 20 O 1.35995 * 120.07631 * 179.74997 * 19 17 16 21 21 C 1.42897 * 116.99806 * 269.97137 * 20 19 17 22 22 H 1.09000 * 109.47466 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47283 * 300.00051 * 1 2 3 24 24 H 1.08996 * 109.47404 * 60.00148 * 1 2 3 25 25 H 1.08000 * 119.99929 * 0.02562 * 4 3 2 26 26 H 1.09004 * 109.46801 * 329.99473 * 6 5 4 27 27 H 1.09000 * 109.47461 * 210.00006 * 6 5 4 28 28 H 1.09004 * 109.47066 * 60.00201 * 7 6 5 29 29 H 1.08994 * 109.47405 * 300.00031 * 7 6 5 30 30 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 31 31 H 1.08002 * 119.92576 * 179.72491 * 16 5 4 32 32 H 1.09008 * 109.47256 * 270.26941 * 18 17 16 33 33 H 1.08995 * 109.46897 * 30.27320 * 18 17 16 34 34 H 1.09001 * 109.46861 * 150.27606 * 18 17 16 35 35 H 1.08998 * 109.47495 * 300.00084 * 21 20 19 36 36 H 1.08998 * 109.47037 * 59.99761 * 21 20 19 37 37 H 1.08997 * 109.47209 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9225 3.6057 0.0000 6 6 1.1018 4.8696 0.0000 7 6 0.8233 5.2969 1.4424 8 6 0.0032 6.5612 1.4423 9 1 -0.2905 7.0144 0.5070 10 6 -0.3776 7.1360 2.6364 11 7 -0.0203 6.5840 3.7754 12 14 -1.4007 8.6989 2.6362 13 1 -1.6686 9.1150 1.2362 14 1 -2.6882 8.4478 3.3325 15 1 -0.6593 9.7761 3.3400 16 6 3.3030 3.6797 -0.0045 17 6 4.0603 2.5232 0.0017 18 6 5.5650 2.6078 0.0029 19 6 3.4360 1.2862 0.0010 20 8 4.1795 0.1475 0.0020 21 6 4.5352 -0.3960 -1.2708 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 0.2146 2.3196 -0.0005 26 1 0.1577 4.6897 -0.5143 27 1 1.6505 5.6591 -0.5134 28 1 1.7674 5.4768 1.9568 29 1 0.2746 4.5075 1.9558 30 1 -0.2879 6.9886 4.6154 31 1 3.7909 4.6432 -0.0086 32 1 5.9286 2.6283 -1.0246 33 1 5.8773 3.5168 0.5170 34 1 5.9772 1.7396 0.5169 35 1 3.6304 -0.6376 -1.8285 36 1 5.1206 0.3356 -1.8276 37 1 5.1263 -1.3005 -1.1272 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260123974.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:24 Heat of formation + Delta-G solvation = -89.263174 kcal Electronic energy + Delta-G solvation = -18128.157518 eV Core-core repulsion = 15255.858105 eV Total energy + Delta-G solvation = -2872.299413 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.57781 -39.19141 -38.47044 -35.77931 -34.05482 -32.45162 -30.49979 -28.50685 -28.19795 -27.54454 -26.14181 -23.62530 -22.67744 -21.30259 -18.96986 -18.54714 -17.94641 -17.83962 -16.99251 -16.51348 -16.09691 -15.57023 -15.34746 -14.99301 -14.76183 -14.44052 -14.26698 -14.16161 -13.57342 -13.29320 -13.03636 -12.89475 -12.74312 -12.65826 -12.60452 -12.54455 -12.08783 -11.85233 -11.73975 -11.36465 -11.11860 -10.90178 -10.57084 -9.50065 -9.05671 -8.19871 -6.32224 0.17919 0.37984 1.41046 1.41211 1.54780 2.26335 2.40536 2.49670 2.94249 3.13317 3.80248 3.85584 4.11564 4.31027 4.33082 4.35211 4.39396 4.50783 4.51862 4.55005 4.66206 4.67972 4.76822 4.80605 4.82975 4.86174 5.06673 5.20055 5.25019 5.42518 5.49088 5.52331 5.71247 5.81949 5.83654 6.14565 6.21474 6.67714 6.84994 7.37565 8.91962 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.029622 B = 0.004920 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.014109 B = 5689.890972 C = 6273.060226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.323 6.323 3 C 0.105 3.895 4 C -0.210 4.210 5 C -0.039 4.039 6 C -0.065 4.065 7 C 0.037 3.963 8 C -0.542 4.542 9 H 0.065 0.935 10 C 0.000 4.000 11 N -0.934 5.934 12 Si 0.967 3.033 13 H -0.259 1.259 14 H -0.279 1.279 15 H -0.278 1.278 16 C -0.153 4.153 17 C -0.066 4.066 18 C -0.106 4.106 19 C 0.032 3.968 20 O -0.338 6.338 21 C 0.030 3.970 22 H 0.127 0.873 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.136 0.864 26 H 0.066 0.934 27 H 0.071 0.929 28 H -0.009 1.009 29 H -0.013 1.013 30 H 0.263 0.737 31 H 0.136 0.864 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.039 0.961 36 H 0.054 0.946 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.881 -12.209 -11.353 18.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.237 6.237 3 C 0.059 3.941 4 C -0.229 4.229 5 C -0.040 4.040 6 C -0.103 4.103 7 C 0.000 4.000 8 C -0.580 4.580 9 H 0.083 0.917 10 C -0.198 4.198 11 N -0.575 5.575 12 Si 0.791 3.209 13 H -0.183 1.183 14 H -0.205 1.205 15 H -0.204 1.204 16 C -0.172 4.172 17 C -0.067 4.067 18 C -0.162 4.162 19 C -0.012 4.012 20 O -0.255 6.255 21 C -0.063 4.063 22 H 0.145 0.855 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.154 0.846 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.009 0.991 29 H 0.006 0.994 30 H 0.072 0.928 31 H 0.153 0.847 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.012 -12.500 -11.036 18.089 hybrid contribution -1.072 0.943 0.359 1.473 sum 5.940 -11.557 -10.677 16.818 Atomic orbital electron populations 1.23334 0.76853 1.05590 1.01872 1.86074 1.23004 1.25926 1.88650 1.19491 0.91912 0.84947 0.97752 1.21137 1.00534 0.91330 1.09908 1.20093 0.94559 0.94880 0.94421 1.20598 0.98237 0.93036 0.98399 1.18905 0.94889 0.94764 0.91433 1.21727 1.33371 1.10002 0.92894 0.91671 1.26002 0.97457 1.01194 0.95154 1.70129 1.47444 1.41835 0.98062 0.85373 0.78110 0.78680 0.78722 1.18290 1.20491 1.20420 1.20967 0.92788 0.98528 1.04871 1.20241 0.98283 0.90657 0.97515 1.20745 0.88140 1.03703 1.03618 1.17863 0.86285 0.86851 1.10179 1.86021 1.70123 1.38570 1.30795 1.23160 0.99850 0.99386 0.83944 0.85476 0.93085 0.91723 0.84645 0.91538 0.91016 0.99077 0.99431 0.92793 0.84653 0.89212 0.90316 0.90688 0.94202 0.92688 0.86818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.52 16 2 O -0.32 -9.99 10.28 -79.62 -0.82 -10.81 16 3 C 0.10 3.59 6.70 22.57 0.15 3.75 16 4 C -0.21 -7.52 8.69 22.35 0.19 -7.33 16 5 C -0.04 -1.49 5.13 -19.86 -0.10 -1.60 16 6 C -0.07 -2.74 5.28 29.85 0.16 -2.58 16 7 C 0.04 1.99 4.96 29.85 0.15 2.14 16 8 C -0.54 -30.79 9.11 25.60 0.23 -30.56 16 9 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 10 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 11 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 12 Si 0.97 44.10 29.54 68.60 2.03 46.13 16 13 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 14 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 15 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 16 C -0.15 -5.27 9.35 22.27 0.21 -5.06 16 17 C -0.07 -2.06 5.89 -19.79 -0.12 -2.18 16 18 C -0.11 -2.43 9.79 71.24 0.70 -1.73 16 19 C 0.03 1.07 5.71 22.57 0.13 1.20 16 20 O -0.34 -10.08 9.25 -79.64 -0.74 -10.82 16 21 C 0.03 0.63 11.13 113.37 1.26 1.89 16 22 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 23 H 0.05 1.24 7.66 -2.38 -0.02 1.22 16 24 H 0.06 1.33 7.66 -2.39 -0.02 1.31 16 25 H 0.14 4.53 6.30 -2.91 -0.02 4.51 16 26 H 0.07 2.65 8.08 -2.38 -0.02 2.63 16 27 H 0.07 2.83 8.08 -2.39 -0.02 2.81 16 28 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 29 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 30 H 0.26 15.17 8.31 -92.70 -0.77 14.39 16 31 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 32 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.08 1.68 8.09 -2.39 -0.02 1.66 16 34 H 0.07 1.69 7.53 -2.39 -0.02 1.67 16 35 H 0.04 0.84 8.14 -2.39 -0.02 0.83 16 36 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -69.24 315.18 6.33 -62.91 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 1.04 Total: 9.91 kcal Atomic # 6 Polarization: -44.62 SS G_CDS: 4.54 Total: -40.09 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.28 Total: -57.23 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -1.55 Total: -21.63 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -69.24 6.33 -62.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260123974.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.354 kcal (2) G-P(sol) polarization free energy of solvation -69.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds