Wall clock time and date at job start Mon Mar 30 2020 06:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47027 * 2 1 4 4 C 1.50702 * 109.47021 * 119.99998 * 2 1 3 5 5 H 1.08001 * 120.00161 * 120.16966 * 4 2 1 6 6 C 1.37880 * 120.00228 * 299.88927 * 4 2 1 7 7 N 1.31517 * 119.99729 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00127 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47060 * 90.00448 * 8 6 4 10 10 H 1.48498 * 109.46814 * 210.00338 * 8 6 4 11 11 H 1.48502 * 109.47225 * 330.00407 * 8 6 4 12 12 C 1.50701 * 109.47347 * 239.99989 * 2 1 3 13 13 C 1.38258 * 119.94451 * 184.45119 * 12 2 1 14 14 C 1.38149 * 120.05674 * 179.72942 * 13 12 2 15 15 C 1.38738 * 119.93907 * 0.56533 * 14 13 12 16 16 O 1.35895 * 120.05400 * 179.68644 * 15 14 13 17 17 C 1.42904 * 117.00141 * 0.02562 * 16 15 14 18 18 C 1.52995 * 109.47331 * 180.02562 * 17 16 15 19 19 O 1.42902 * 109.47372 * 64.99778 * 18 17 16 20 20 C 1.38731 * 119.88759 * 359.70784 * 15 14 13 21 21 C 1.38139 * 119.94608 * 359.97438 * 20 15 14 22 22 H 1.09003 * 109.47352 * 299.99622 * 1 2 3 23 23 H 1.08993 * 109.47012 * 59.99896 * 1 2 3 24 24 H 1.09000 * 109.47287 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47285 * 179.97438 * 3 2 1 26 26 H 1.08993 * 109.47310 * 299.99922 * 3 2 1 27 27 H 1.09005 * 109.46998 * 60.00476 * 3 2 1 28 28 H 0.96998 * 119.99744 * 180.02562 * 7 6 4 29 29 H 1.08001 * 119.97405 * 359.97438 * 13 12 2 30 30 H 1.07996 * 120.02909 * 180.25191 * 14 13 12 31 31 H 1.08998 * 109.46953 * 300.00152 * 17 16 15 32 32 H 1.08997 * 109.46866 * 60.00168 * 17 16 15 33 33 H 1.09002 * 109.47616 * 184.99897 * 18 17 16 34 34 H 1.09000 * 109.47408 * 305.00187 * 18 17 16 35 35 H 0.96693 * 114.00648 * 180.02562 * 19 18 17 36 36 H 1.07997 * 120.02407 * 179.97438 * 20 15 14 37 37 H 1.08009 * 119.97424 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6555 -1.5869 1.1314 6 6 1.7011 -0.2381 2.4828 7 7 0.9464 0.8322 2.6034 8 14 2.3243 -1.1183 4.0080 9 1 3.6336 -0.5444 4.4104 10 1 1.3475 -0.9455 5.1130 11 1 2.4874 -2.5645 3.7130 12 6 2.0324 -0.7104 -1.2305 13 6 3.3885 -0.9172 -1.4026 14 6 3.8512 -1.5731 -2.5270 15 6 2.9546 -2.0140 -3.4895 16 8 3.4076 -2.6538 -4.5995 17 6 4.8203 -2.8391 -4.7104 18 6 5.1377 -3.5716 -6.0155 19 8 4.7764 -2.7465 -7.1249 20 6 1.5947 -1.8003 -3.3170 21 6 1.1367 -1.1497 -2.1878 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8901 28 1 0.7137 1.1647 3.4844 29 1 4.0865 -0.5691 -0.6556 30 1 4.9103 -1.7379 -2.6590 31 1 5.3152 -1.8680 -4.7095 32 1 5.1766 -3.4293 -3.8662 33 1 6.2044 -3.7916 -6.0586 34 1 4.5727 -4.5028 -6.0563 35 1 4.9499 -3.1484 -7.9871 36 1 0.8948 -2.1422 -4.0650 37 1 0.0781 -0.9827 -2.0532 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260130888.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:18 Heat of formation + Delta-G solvation = -69.823814 kcal Electronic energy + Delta-G solvation = -18180.254213 eV Core-core repulsion = 15308.797754 eV Total energy + Delta-G solvation = -2871.456459 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.70828 -37.88668 -36.66170 -34.65012 -31.42197 -30.66692 -29.83716 -27.57123 -25.81288 -25.14154 -23.39190 -21.87948 -21.13272 -18.86951 -18.05319 -17.68365 -16.11996 -15.58617 -15.43563 -14.97816 -14.46661 -14.11310 -13.77281 -13.59381 -12.91033 -12.77161 -12.53135 -12.10628 -11.89605 -11.46231 -11.34709 -11.06475 -10.97787 -10.77583 -10.50160 -10.41662 -10.31730 -10.17981 -10.05651 -9.52923 -9.29118 -8.78586 -8.32678 -8.29329 -7.26878 -5.95663 -4.05491 2.04863 2.22482 3.29786 3.37057 3.40892 3.45399 3.99791 4.40315 4.58096 4.82130 4.96449 5.13853 5.29900 5.31665 5.47757 5.48999 5.58765 5.95845 6.09415 6.22787 6.38266 6.63583 6.77848 6.85317 6.92780 6.99215 7.05274 7.23227 7.35275 7.37688 7.44710 7.53040 7.70938 7.76216 7.95989 8.10819 8.23404 8.47915 8.94673 9.59344 11.05126 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.036294 B = 0.004868 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.300053 B = 5750.200989 C = 6140.414468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.096 3.904 3 C -0.126 4.126 4 C -0.498 4.498 5 H 0.056 0.944 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.890 3.110 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.275 1.275 12 C -0.060 4.060 13 C -0.074 4.074 14 C -0.212 4.212 15 C 0.094 3.906 16 O -0.315 6.315 17 C 0.061 3.939 18 C 0.079 3.921 19 O -0.565 6.565 20 C -0.154 4.154 21 C -0.096 4.096 22 H 0.085 0.915 23 H 0.012 0.988 24 H 0.028 0.972 25 H 0.026 0.974 26 H 0.009 0.991 27 H 0.086 0.914 28 H 0.259 0.741 29 H 0.124 0.876 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.378 0.622 36 H 0.117 0.883 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.393 -6.240 -13.021 15.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.096 3.904 3 C -0.183 4.183 4 C -0.536 4.536 5 H 0.074 0.926 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.200 1.200 12 C -0.060 4.060 13 C -0.093 4.093 14 C -0.231 4.231 15 C 0.051 3.949 16 O -0.230 6.230 17 C -0.015 4.015 18 C 0.001 3.999 19 O -0.371 6.371 20 C -0.173 4.173 21 C -0.114 4.114 22 H 0.104 0.896 23 H 0.031 0.969 24 H 0.047 0.953 25 H 0.045 0.955 26 H 0.028 0.972 27 H 0.105 0.895 28 H 0.069 0.931 29 H 0.142 0.858 30 H 0.132 0.868 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.224 0.776 36 H 0.135 0.865 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.026 -5.798 -12.544 15.076 hybrid contribution 0.823 -0.915 0.581 1.361 sum 6.849 -6.713 -11.964 15.333 Atomic orbital electron populations 1.21890 0.97715 0.99080 1.00376 1.17211 0.92527 0.91904 0.88748 1.21802 0.98366 0.97836 1.00339 1.21100 1.31043 1.11828 0.89670 0.92592 1.24911 0.95025 0.94967 0.98736 1.69815 1.36875 1.22741 1.23103 0.86620 0.78555 0.80141 0.82853 1.20784 1.21267 1.20007 1.20571 0.92563 0.96558 0.96352 1.20887 0.96226 0.96567 0.95576 1.21131 0.98372 1.06534 0.97049 1.18851 0.93452 0.96121 0.86526 1.86038 1.22949 1.73925 1.40088 1.22717 0.81662 1.00852 0.96287 1.22214 0.98521 0.93409 0.85752 1.86601 1.88094 1.45861 1.16496 1.20309 0.92179 1.04971 0.99849 1.21118 1.00311 0.97363 0.92631 0.89648 0.96908 0.95285 0.95507 0.97211 0.89536 0.93058 0.85837 0.86781 0.91611 0.90886 0.91775 0.92590 0.77562 0.86453 0.85395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 6.92 37.16 0.26 -2.90 16 2 C 0.10 2.34 0.58 -156.81 -0.09 2.25 16 3 C -0.13 -3.02 8.10 37.16 0.30 -2.72 16 4 C -0.50 -13.23 7.57 -34.44 -0.26 -13.49 16 5 H 0.06 1.51 7.47 -52.49 -0.39 1.11 16 6 C 0.06 1.72 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -24.07 9.35 55.43 0.52 -23.55 16 8 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C -0.06 -1.33 4.73 -104.60 -0.49 -1.83 16 13 C -0.07 -1.53 8.60 -39.61 -0.34 -1.87 16 14 C -0.21 -3.85 9.04 -39.43 -0.36 -4.20 16 15 C 0.09 1.73 6.69 -39.21 -0.26 1.47 16 16 O -0.32 -5.26 10.10 -24.26 -0.25 -5.50 16 17 C 0.06 0.75 5.12 37.16 0.19 0.95 16 18 C 0.08 0.75 7.43 37.16 0.28 1.02 16 19 O -0.57 -6.13 13.62 -40.08 -0.55 -6.67 16 20 C -0.15 -2.88 9.99 -39.44 -0.39 -3.27 16 21 C -0.10 -1.94 8.98 -39.61 -0.36 -2.30 16 22 H 0.08 2.21 6.08 -51.93 -0.32 1.89 16 23 H 0.01 0.26 7.29 -51.93 -0.38 -0.12 16 24 H 0.03 0.66 7.73 -51.93 -0.40 0.26 16 25 H 0.03 0.61 7.66 -51.93 -0.40 0.21 16 26 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.09 2.24 6.06 -51.93 -0.31 1.93 16 28 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.12 2.53 7.72 -52.49 -0.41 2.13 16 30 H 0.11 1.74 6.30 -52.49 -0.33 1.40 16 31 H 0.07 0.83 7.66 -51.93 -0.40 0.43 16 32 H 0.07 0.79 7.66 -51.93 -0.40 0.40 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.38 2.04 9.12 45.56 0.42 2.46 16 36 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 37 H 0.13 2.44 5.90 -52.48 -0.31 2.13 16 LS Contribution 300.26 15.07 4.52 4.52 Total: -1.00 -30.26 300.26 -6.84 -37.11 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -4.45 Total: 3.48 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: -1.62 Total: -25.26 kcal Atomic # 7 Polarization: -24.07 SS G_CDS: 0.52 Total: -23.55 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -0.79 Total: -12.17 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.26 -6.84 -37.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260130888.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.719 kcal (2) G-P(sol) polarization free energy of solvation -30.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds