Wall clock time and date at job start Mon Mar 30 2020 06:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47027 * 2 1 4 4 C 1.50702 * 109.47021 * 119.99998 * 2 1 3 5 5 H 1.08001 * 120.00161 * 120.16966 * 4 2 1 6 6 C 1.37880 * 120.00228 * 299.88927 * 4 2 1 7 7 N 1.31517 * 119.99729 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00127 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47060 * 90.00448 * 8 6 4 10 10 H 1.48498 * 109.46814 * 210.00338 * 8 6 4 11 11 H 1.48502 * 109.47225 * 330.00407 * 8 6 4 12 12 C 1.50701 * 109.47347 * 239.99989 * 2 1 3 13 13 C 1.38258 * 119.94451 * 184.45119 * 12 2 1 14 14 C 1.38149 * 120.05674 * 179.72942 * 13 12 2 15 15 C 1.38738 * 119.93907 * 0.56533 * 14 13 12 16 16 O 1.35895 * 120.05400 * 179.68644 * 15 14 13 17 17 C 1.42904 * 117.00141 * 0.02562 * 16 15 14 18 18 C 1.52995 * 109.47331 * 180.02562 * 17 16 15 19 19 O 1.42902 * 109.47372 * 64.99778 * 18 17 16 20 20 C 1.38731 * 119.88759 * 359.70784 * 15 14 13 21 21 C 1.38139 * 119.94608 * 359.97438 * 20 15 14 22 22 H 1.09003 * 109.47352 * 299.99622 * 1 2 3 23 23 H 1.08993 * 109.47012 * 59.99896 * 1 2 3 24 24 H 1.09000 * 109.47287 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47285 * 179.97438 * 3 2 1 26 26 H 1.08993 * 109.47310 * 299.99922 * 3 2 1 27 27 H 1.09005 * 109.46998 * 60.00476 * 3 2 1 28 28 H 0.96998 * 119.99744 * 180.02562 * 7 6 4 29 29 H 1.08001 * 119.97405 * 359.97438 * 13 12 2 30 30 H 1.07996 * 120.02909 * 180.25191 * 14 13 12 31 31 H 1.08998 * 109.46953 * 300.00152 * 17 16 15 32 32 H 1.08997 * 109.46866 * 60.00168 * 17 16 15 33 33 H 1.09002 * 109.47616 * 184.99897 * 18 17 16 34 34 H 1.09000 * 109.47408 * 305.00187 * 18 17 16 35 35 H 0.96693 * 114.00648 * 180.02562 * 19 18 17 36 36 H 1.07997 * 120.02407 * 179.97438 * 20 15 14 37 37 H 1.08009 * 119.97424 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6555 -1.5869 1.1314 6 6 1.7011 -0.2381 2.4828 7 7 0.9464 0.8322 2.6034 8 14 2.3243 -1.1183 4.0080 9 1 3.6336 -0.5444 4.4104 10 1 1.3475 -0.9455 5.1130 11 1 2.4874 -2.5645 3.7130 12 6 2.0324 -0.7104 -1.2305 13 6 3.3885 -0.9172 -1.4026 14 6 3.8512 -1.5731 -2.5270 15 6 2.9546 -2.0140 -3.4895 16 8 3.4076 -2.6538 -4.5995 17 6 4.8203 -2.8391 -4.7104 18 6 5.1377 -3.5716 -6.0155 19 8 4.7764 -2.7465 -7.1249 20 6 1.5947 -1.8003 -3.3170 21 6 1.1367 -1.1497 -2.1878 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8901 28 1 0.7137 1.1647 3.4844 29 1 4.0865 -0.5691 -0.6556 30 1 4.9103 -1.7379 -2.6590 31 1 5.3152 -1.8680 -4.7095 32 1 5.1766 -3.4293 -3.8662 33 1 6.2044 -3.7916 -6.0586 34 1 4.5727 -4.5028 -6.0563 35 1 4.9499 -3.1484 -7.9871 36 1 0.8948 -2.1422 -4.0650 37 1 0.0781 -0.9827 -2.0532 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260130888.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:17 Heat of formation + Delta-G solvation = -88.899268 kcal Electronic energy + Delta-G solvation = -18181.081386 eV Core-core repulsion = 15308.797754 eV Total energy + Delta-G solvation = -2872.283633 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.08099 -39.26770 -37.58815 -36.33200 -33.30054 -32.07138 -30.96451 -29.07274 -27.67554 -27.16603 -24.50476 -23.43754 -22.46370 -20.59883 -19.23517 -18.55446 -18.03107 -17.02787 -16.70747 -16.48722 -15.71680 -15.52571 -15.11931 -14.83665 -14.73872 -14.26205 -13.75433 -13.69970 -13.43920 -13.19495 -12.95188 -12.80831 -12.60324 -12.38363 -12.19281 -12.10934 -11.82461 -11.70755 -11.34051 -11.10038 -10.97084 -10.70206 -10.34023 -9.78591 -8.79084 -7.96796 -6.12935 0.55196 0.70637 1.42773 1.45409 1.53802 2.32091 2.47175 3.02105 3.25911 3.34559 3.94929 4.05394 4.15060 4.18459 4.36241 4.46510 4.48194 4.65772 4.68811 4.77632 4.84795 4.90962 4.98408 5.09536 5.14327 5.27675 5.43211 5.47732 5.58404 5.64031 5.73578 5.89918 5.99649 6.20650 6.31892 6.49673 6.60123 6.91887 6.92646 7.53947 9.01458 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.036294 B = 0.004868 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.300053 B = 5750.200989 C = 6140.414468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.089 3.911 3 C -0.116 4.116 4 C -0.511 4.511 5 H 0.045 0.955 6 C 0.023 3.977 7 N -0.905 5.905 8 Si 0.945 3.055 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.275 1.275 12 C -0.089 4.089 13 C -0.086 4.086 14 C -0.207 4.207 15 C 0.099 3.901 16 O -0.325 6.325 17 C 0.045 3.955 18 C 0.081 3.919 19 O -0.595 6.595 20 C -0.158 4.158 21 C -0.101 4.101 22 H 0.060 0.940 23 H 0.030 0.970 24 H 0.026 0.974 25 H 0.024 0.976 26 H 0.020 0.980 27 H 0.063 0.937 28 H 0.259 0.741 29 H 0.115 0.885 30 H 0.143 0.857 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.399 0.601 36 H 0.138 0.862 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.520 -7.527 -14.415 17.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.089 3.911 3 C -0.174 4.174 4 C -0.549 4.549 5 H 0.063 0.937 6 C -0.175 4.175 7 N -0.544 5.544 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.200 1.200 12 C -0.089 4.089 13 C -0.104 4.104 14 C -0.225 4.225 15 C 0.055 3.945 16 O -0.240 6.240 17 C -0.030 4.030 18 C 0.003 3.997 19 O -0.404 6.404 20 C -0.177 4.177 21 C -0.119 4.119 22 H 0.079 0.921 23 H 0.049 0.951 24 H 0.045 0.955 25 H 0.043 0.957 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.134 0.866 30 H 0.161 0.839 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.249 0.751 36 H 0.156 0.844 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.167 -7.097 -13.963 17.225 hybrid contribution 0.536 -0.561 0.881 1.174 sum 7.704 -7.658 -13.082 17.004 Atomic orbital electron populations 1.21745 0.97614 0.98737 0.99981 1.17195 0.92659 0.91915 0.89322 1.21664 0.98134 0.97961 0.99653 1.21314 1.30952 1.11659 0.90995 0.93673 1.25525 0.95344 0.95642 1.01038 1.69938 1.37490 1.23545 1.23433 0.85768 0.78099 0.79044 0.79957 1.20380 1.21049 1.20017 1.20439 0.93661 0.98469 0.96350 1.20886 0.95611 0.97471 0.96479 1.21336 0.99983 1.05322 0.95895 1.18979 0.93461 0.95237 0.86867 1.86050 1.25699 1.73229 1.39031 1.23170 0.79323 1.01613 0.98927 1.22312 1.00678 0.92682 0.84002 1.86531 1.88552 1.47157 1.18130 1.20529 0.93082 1.04389 0.99673 1.21162 1.00334 0.97574 0.92836 0.92092 0.95074 0.95508 0.95673 0.96055 0.91825 0.93174 0.86650 0.83899 0.91813 0.89146 0.88249 0.91889 0.75050 0.84441 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 6.92 71.98 0.50 -5.39 16 2 C 0.09 4.39 0.58 -53.67 -0.03 4.36 16 3 C -0.12 -5.66 8.10 71.98 0.58 -5.08 16 4 C -0.51 -27.48 7.57 25.60 0.19 -27.29 16 5 H 0.04 2.46 7.47 -2.91 -0.02 2.44 16 6 C 0.02 1.25 5.15 84.65 0.44 1.69 16 7 N -0.90 -49.88 9.35 21.45 0.20 -49.68 16 8 Si 0.94 43.12 29.54 68.60 2.03 45.15 16 9 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 C -0.09 -3.91 4.73 -19.85 -0.09 -4.01 16 13 C -0.09 -3.51 8.60 22.25 0.19 -3.32 16 14 C -0.21 -7.12 9.04 22.37 0.20 -6.92 16 15 C 0.10 3.43 6.69 22.51 0.15 3.58 16 16 O -0.33 -10.01 10.10 -87.73 -0.89 -10.90 16 17 C 0.04 0.98 5.12 71.98 0.37 1.35 16 18 C 0.08 1.25 7.43 71.98 0.53 1.79 16 19 O -0.59 -11.28 13.62 -144.35 -1.97 -13.25 16 20 C -0.16 -5.62 9.99 22.36 0.22 -5.40 16 21 C -0.10 -3.99 8.98 22.25 0.20 -3.79 16 22 H 0.06 3.20 6.08 -2.39 -0.01 3.19 16 23 H 0.03 1.32 7.29 -2.39 -0.02 1.30 16 24 H 0.03 1.23 7.73 -2.39 -0.02 1.21 16 25 H 0.02 1.16 7.66 -2.38 -0.02 1.15 16 26 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 3.37 6.06 -2.38 -0.01 3.35 16 28 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 29 H 0.12 4.77 7.72 -2.91 -0.02 4.75 16 30 H 0.14 3.97 6.30 -2.91 -0.02 3.95 16 31 H 0.06 1.43 7.66 -2.39 -0.02 1.41 16 32 H 0.09 1.66 7.66 -2.39 -0.02 1.64 16 33 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.40 3.24 9.12 -74.06 -0.68 2.57 16 36 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 37 H 0.13 4.96 5.90 -2.91 -0.02 4.95 16 Total: -1.00 -64.24 300.26 3.22 -61.01 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.39 Total: 16.10 kcal Atomic # 6 Polarization: -51.89 SS G_CDS: 3.46 Total: -48.43 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 0.20 Total: -49.68 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -2.85 Total: -24.15 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -64.24 3.22 -61.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260130888.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.885 kcal (2) G-P(sol) polarization free energy of solvation -64.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds