Wall clock time and date at job start Mon Mar 30 2020 05:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35995 * 116.99921 * 2 1 4 4 C 1.38566 * 120.07337 * 0.02562 * 3 2 1 5 5 C 1.38248 * 120.00149 * 179.97438 * 4 3 2 6 6 C 1.50692 * 119.92442 * 180.02562 * 5 4 3 7 7 C 1.38250 * 120.14486 * 0.02562 * 5 4 3 8 8 C 1.38243 * 120.14601 * 359.97438 * 7 5 4 9 9 C 1.50707 * 119.99971 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.46642 * 356.67180 * 9 8 7 11 11 C 1.52992 * 109.47110 * 116.67388 * 9 8 7 12 12 C 1.50699 * 109.46912 * 236.67659 * 9 8 7 13 13 H 1.07997 * 120.00312 * 0.42204 * 12 9 8 14 14 C 1.37881 * 119.99582 * 180.43125 * 12 9 8 15 15 N 1.31513 * 120.00251 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 119.99903 * 179.97438 * 14 12 9 17 17 H 1.48497 * 109.47248 * 89.99685 * 16 14 12 18 18 H 1.48501 * 109.47252 * 210.00118 * 16 14 12 19 19 H 1.48506 * 109.47094 * 329.99662 * 16 14 12 20 20 C 1.38566 * 119.99987 * 0.02562 * 8 7 5 21 21 O 1.35997 * 120.07136 * 179.97438 * 20 8 7 22 22 H 1.08997 * 109.47055 * 299.99745 * 1 2 3 23 23 H 1.08999 * 109.47028 * 60.00023 * 1 2 3 24 24 H 1.08995 * 109.46842 * 179.97438 * 1 2 3 25 25 H 1.08004 * 120.00117 * 359.70223 * 4 3 2 26 26 H 1.08999 * 109.47594 * 90.00520 * 6 5 4 27 27 H 1.09004 * 109.46700 * 209.99838 * 6 5 4 28 28 H 1.08999 * 109.47585 * 329.99900 * 6 5 4 29 29 H 1.08003 * 119.92621 * 179.97438 * 7 5 4 30 30 H 1.09001 * 109.47199 * 60.00359 * 10 9 8 31 31 H 1.09011 * 109.46720 * 179.97438 * 10 9 8 32 32 H 1.08996 * 109.47714 * 299.99545 * 10 9 8 33 33 H 1.08998 * 109.47489 * 59.99856 * 11 9 8 34 34 H 1.09002 * 109.47657 * 180.02562 * 11 9 8 35 35 H 1.09001 * 109.47191 * 300.00493 * 11 9 8 36 36 H 0.96998 * 120.00019 * 179.97438 * 15 14 12 37 37 H 0.96698 * 113.99853 * 270.01956 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6058 0.0011 6 6 1.1015 4.8696 0.0022 7 6 3.3029 3.6799 0.0005 8 6 4.0602 2.5234 0.0000 9 6 5.5649 2.6081 0.0000 10 6 5.9931 4.0746 -0.0831 11 6 6.1105 1.9897 1.2886 12 6 6.1102 1.8575 -1.1876 13 1 5.4346 1.3739 -1.8774 14 6 7.4718 1.7881 -1.3932 15 7 8.2946 2.3773 -0.5533 16 14 8.1479 0.8571 -2.8648 17 1 8.2710 1.7809 -4.0210 18 1 9.4843 0.3035 -2.5290 19 1 7.2258 -0.2532 -3.2143 20 6 3.4359 1.2864 -0.0005 21 8 4.1795 0.1478 -0.0016 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.2146 2.3197 -0.0039 26 1 0.9041 5.1737 1.0301 27 1 1.6499 5.6594 -0.5113 28 1 0.1570 4.6899 -0.5113 29 1 3.7907 4.6435 0.0005 30 1 5.5987 4.6175 0.7758 31 1 7.0815 4.1359 -0.0826 32 1 5.6045 4.5152 -1.0012 33 1 5.8054 0.9449 1.3479 34 1 7.1988 2.0513 1.2889 35 1 5.7160 2.5325 2.1476 36 1 9.2525 2.3281 -0.6977 37 1 4.3945 -0.1808 -0.8853 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260139206.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:27 Heat of formation + Delta-G solvation = -63.637652 kcal Electronic energy + Delta-G solvation = -19125.990604 eV Core-core repulsion = 16254.802397 eV Total energy + Delta-G solvation = -2871.188207 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.97606 -37.78008 -36.02738 -34.98699 -31.71086 -30.60937 -28.45885 -27.49972 -26.15075 -25.20327 -24.93054 -22.09268 -20.90845 -18.81616 -17.71031 -16.62479 -16.11684 -15.59720 -15.44218 -14.85278 -14.45056 -13.79361 -13.50735 -13.30852 -13.07781 -12.73485 -12.24553 -12.11841 -11.61008 -11.50883 -11.29585 -11.12661 -10.96084 -10.79593 -10.67103 -10.44205 -10.23924 -10.11371 -10.08234 -9.47165 -9.16535 -8.80841 -8.30315 -7.72364 -7.42353 -5.95139 -4.04706 1.90241 2.06118 3.30350 3.37727 3.39518 3.63281 4.25572 4.44702 5.04940 5.12064 5.27733 5.29327 5.31771 5.42089 5.51892 5.68811 5.81557 5.90415 6.03397 6.13237 6.26702 6.62130 6.72730 6.79278 6.89147 6.97973 7.06556 7.10326 7.35941 7.43665 7.49590 7.70461 7.75584 7.79940 8.16612 8.21058 8.45921 8.68329 8.91476 9.58534 11.05947 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023571 B = 0.007961 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.604928 B = 3516.241459 C = 4150.557720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.312 6.312 3 C 0.090 3.910 4 C -0.221 4.221 5 C -0.070 4.070 6 C -0.107 4.107 7 C -0.152 4.152 8 C -0.016 4.016 9 C 0.103 3.897 10 C -0.133 4.133 11 C -0.128 4.128 12 C -0.492 4.492 13 H 0.051 0.949 14 C 0.067 3.933 15 N -0.885 5.885 16 Si 0.891 3.109 17 H -0.283 1.283 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.082 3.918 21 O -0.473 6.473 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.092 0.908 25 H 0.118 0.882 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.127 0.873 30 H 0.012 0.988 31 H 0.085 0.915 32 H 0.028 0.972 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.003 0.997 36 H 0.259 0.741 37 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.611 0.816 0.530 12.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.225 6.225 3 C 0.045 3.955 4 C -0.240 4.240 5 C -0.070 4.070 6 C -0.164 4.164 7 C -0.170 4.170 8 C -0.016 4.016 9 C 0.103 3.897 10 C -0.191 4.191 11 C -0.185 4.185 12 C -0.530 4.530 13 H 0.069 0.931 14 C -0.134 4.134 15 N -0.523 5.523 16 Si 0.719 3.281 17 H -0.209 1.209 18 H -0.213 1.213 19 H -0.200 1.200 20 C 0.036 3.964 21 O -0.282 6.282 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.111 0.889 25 H 0.136 0.864 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.145 0.855 30 H 0.031 0.969 31 H 0.104 0.896 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.022 0.978 36 H 0.070 0.930 37 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -12.359 0.692 1.170 12.434 hybrid contribution 0.068 -0.424 -1.375 1.440 sum -12.291 0.268 -0.205 12.296 Atomic orbital electron populations 1.22938 0.79803 1.03066 1.00799 1.86136 1.20136 1.27014 1.89260 1.19538 0.91959 0.84167 0.99860 1.20702 0.98778 0.91644 1.12838 1.19601 0.94088 0.93988 0.99353 1.20710 0.98857 0.95089 1.01738 1.21004 0.92112 0.98961 1.04950 1.20903 0.99089 0.90316 0.91326 1.17166 0.83458 0.93764 0.95351 1.21913 1.04270 0.96305 0.96579 1.21819 1.03733 0.98917 0.94036 1.20835 0.91267 1.32832 1.08104 0.93103 1.24862 0.96922 0.95457 0.96193 1.69810 1.02827 1.43738 1.35952 0.86620 0.78464 0.80094 0.82936 1.20919 1.21278 1.19974 1.17602 0.85064 0.87322 1.06413 1.84809 1.71631 1.38865 1.32911 0.93202 0.93236 0.88908 0.86388 0.91652 0.91634 0.92290 0.85533 0.96914 0.89592 0.95307 0.93570 0.89718 0.97825 0.93030 0.76359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.31 -5.47 10.28 -34.23 -0.35 -5.82 16 3 C 0.09 1.72 6.70 -39.12 -0.26 1.46 16 4 C -0.22 -3.71 8.69 -39.46 -0.34 -4.06 16 5 C -0.07 -1.19 5.88 -104.62 -0.62 -1.80 16 6 C -0.11 -1.37 10.01 36.00 0.36 -1.01 16 7 C -0.15 -2.99 8.63 -39.57 -0.34 -3.33 16 8 C -0.02 -0.35 4.73 -104.50 -0.49 -0.84 16 9 C 0.10 2.51 0.48 -156.81 -0.08 2.44 16 10 C -0.13 -3.15 6.92 37.16 0.26 -2.89 16 11 C -0.13 -3.19 8.06 37.15 0.30 -2.89 16 12 C -0.49 -12.82 6.71 -34.44 -0.23 -13.05 16 13 H 0.05 1.31 6.71 -52.49 -0.35 0.96 16 14 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 15 N -0.88 -24.00 9.35 55.43 0.52 -23.49 16 16 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 20 C 0.08 1.77 6.17 -39.12 -0.24 1.53 16 21 O -0.47 -10.43 10.30 -34.23 -0.35 -10.79 16 22 H 0.05 0.54 7.67 -51.93 -0.40 0.15 16 23 H 0.05 0.53 7.66 -51.93 -0.40 0.14 16 24 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.12 1.62 6.30 -52.48 -0.33 1.29 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 28 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 29 H 0.13 2.38 5.89 -52.48 -0.31 2.07 16 30 H 0.01 0.26 7.36 -51.93 -0.38 -0.12 16 31 H 0.09 2.22 6.10 -51.92 -0.32 1.90 16 32 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 33 H 0.05 1.17 6.41 -51.93 -0.33 0.83 16 34 H 0.08 2.26 6.04 -51.93 -0.31 1.95 16 35 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 36 H 0.26 6.79 8.31 -40.82 -0.34 6.46 16 37 H 0.38 7.55 8.02 45.56 0.37 7.92 16 LS Contribution 293.45 15.07 4.42 4.42 Total: -1.00 -29.01 293.45 -5.98 -34.99 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -4.41 Total: 6.43 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -0.79 Total: -21.43 kcal Atomic # 7 Polarization: -24.00 SS G_CDS: 0.52 Total: -23.49 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.70 Total: -16.61 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.01 -5.98 -34.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260139206.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.644 kcal (2) G-P(sol) polarization free energy of solvation -29.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds