Wall clock time and date at job start Mon Mar 30 2020 05:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35995 * 116.99921 * 2 1 4 4 C 1.38566 * 120.07337 * 0.02562 * 3 2 1 5 5 C 1.38248 * 120.00149 * 179.97438 * 4 3 2 6 6 C 1.50692 * 119.92442 * 180.02562 * 5 4 3 7 7 C 1.38250 * 120.14486 * 0.02562 * 5 4 3 8 8 C 1.38243 * 120.14601 * 359.97438 * 7 5 4 9 9 C 1.50707 * 119.99971 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.46642 * 356.67180 * 9 8 7 11 11 C 1.52992 * 109.47110 * 116.67388 * 9 8 7 12 12 C 1.50699 * 109.46912 * 236.67659 * 9 8 7 13 13 H 1.07997 * 120.00312 * 0.42204 * 12 9 8 14 14 C 1.37881 * 119.99582 * 180.43125 * 12 9 8 15 15 N 1.31513 * 120.00251 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 119.99903 * 179.97438 * 14 12 9 17 17 H 1.48497 * 109.47248 * 89.99685 * 16 14 12 18 18 H 1.48501 * 109.47252 * 210.00118 * 16 14 12 19 19 H 1.48506 * 109.47094 * 329.99662 * 16 14 12 20 20 C 1.38566 * 119.99987 * 0.02562 * 8 7 5 21 21 O 1.35997 * 120.07136 * 179.97438 * 20 8 7 22 22 H 1.08997 * 109.47055 * 299.99745 * 1 2 3 23 23 H 1.08999 * 109.47028 * 60.00023 * 1 2 3 24 24 H 1.08995 * 109.46842 * 179.97438 * 1 2 3 25 25 H 1.08004 * 120.00117 * 359.70223 * 4 3 2 26 26 H 1.08999 * 109.47594 * 90.00520 * 6 5 4 27 27 H 1.09004 * 109.46700 * 209.99838 * 6 5 4 28 28 H 1.08999 * 109.47585 * 329.99900 * 6 5 4 29 29 H 1.08003 * 119.92621 * 179.97438 * 7 5 4 30 30 H 1.09001 * 109.47199 * 60.00359 * 10 9 8 31 31 H 1.09011 * 109.46720 * 179.97438 * 10 9 8 32 32 H 1.08996 * 109.47714 * 299.99545 * 10 9 8 33 33 H 1.08998 * 109.47489 * 59.99856 * 11 9 8 34 34 H 1.09002 * 109.47657 * 180.02562 * 11 9 8 35 35 H 1.09001 * 109.47191 * 300.00493 * 11 9 8 36 36 H 0.96998 * 120.00019 * 179.97438 * 15 14 12 37 37 H 0.96698 * 113.99853 * 270.01956 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6058 0.0011 6 6 1.1015 4.8696 0.0022 7 6 3.3029 3.6799 0.0005 8 6 4.0602 2.5234 0.0000 9 6 5.5649 2.6081 0.0000 10 6 5.9931 4.0746 -0.0831 11 6 6.1105 1.9897 1.2886 12 6 6.1102 1.8575 -1.1876 13 1 5.4346 1.3739 -1.8774 14 6 7.4718 1.7881 -1.3932 15 7 8.2946 2.3773 -0.5533 16 14 8.1479 0.8571 -2.8648 17 1 8.2710 1.7809 -4.0210 18 1 9.4843 0.3035 -2.5290 19 1 7.2258 -0.2532 -3.2143 20 6 3.4359 1.2864 -0.0005 21 8 4.1795 0.1478 -0.0016 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.2146 2.3197 -0.0039 26 1 0.9041 5.1737 1.0301 27 1 1.6499 5.6594 -0.5113 28 1 0.1570 4.6899 -0.5113 29 1 3.7907 4.6435 0.0005 30 1 5.5987 4.6175 0.7758 31 1 7.0815 4.1359 -0.0826 32 1 5.6045 4.5152 -1.0012 33 1 5.8054 0.9449 1.3479 34 1 7.1988 2.0513 1.2889 35 1 5.7160 2.5325 2.1476 36 1 9.2525 2.3281 -0.6977 37 1 4.3945 -0.1808 -0.8853 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260139206.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:26 Heat of formation + Delta-G solvation = -80.956173 kcal Electronic energy + Delta-G solvation = -19126.741592 eV Core-core repulsion = 16254.802397 eV Total energy + Delta-G solvation = -2871.939194 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.40930 -39.21114 -37.53377 -36.74770 -33.54013 -31.99142 -30.03909 -28.52990 -27.87531 -27.21089 -26.41626 -23.66947 -22.32313 -20.51279 -19.29584 -18.07686 -17.79554 -17.11785 -16.75236 -16.66170 -15.94712 -15.21190 -15.06523 -14.64834 -14.56550 -14.22082 -13.63721 -13.46831 -13.17454 -13.01501 -12.86268 -12.71602 -12.68813 -12.50359 -12.23771 -12.11200 -12.02408 -11.86348 -11.62294 -11.32208 -10.92231 -10.66439 -10.30647 -9.25045 -8.85541 -7.95683 -6.10416 0.45805 0.59876 1.43914 1.46496 1.54026 2.43955 2.47464 2.82345 3.27029 3.61736 3.95894 4.12053 4.31775 4.42385 4.43292 4.53918 4.67531 4.72988 4.83373 4.88293 4.90375 4.95798 5.03189 5.13946 5.15357 5.28142 5.39744 5.49840 5.59354 5.67012 5.70394 5.83857 5.95807 6.18992 6.26928 6.46017 6.50254 6.90589 7.11928 7.54604 9.03680 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023571 B = 0.007961 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.604928 B = 3516.241459 C = 4150.557720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.090 3.910 4 C -0.213 4.213 5 C -0.060 4.060 6 C -0.106 4.106 7 C -0.168 4.168 8 C -0.043 4.043 9 C 0.097 3.903 10 C -0.122 4.122 11 C -0.116 4.116 12 C -0.498 4.498 13 H 0.046 0.954 14 C 0.023 3.977 15 N -0.907 5.907 16 Si 0.945 3.055 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.269 1.269 20 C 0.047 3.953 21 O -0.488 6.488 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.117 0.883 25 H 0.157 0.843 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.129 0.871 30 H 0.028 0.972 31 H 0.060 0.940 32 H 0.029 0.971 33 H 0.032 0.968 34 H 0.062 0.938 35 H 0.010 0.990 36 H 0.258 0.742 37 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.448 1.337 0.093 15.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.044 3.956 4 C -0.231 4.231 5 C -0.061 4.061 6 C -0.162 4.162 7 C -0.186 4.186 8 C -0.043 4.043 9 C 0.096 3.904 10 C -0.179 4.179 11 C -0.174 4.174 12 C -0.536 4.536 13 H 0.064 0.936 14 C -0.176 4.176 15 N -0.546 5.546 16 Si 0.772 3.228 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.194 1.194 20 C 0.001 3.999 21 O -0.298 6.298 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.135 0.865 25 H 0.174 0.826 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.147 0.853 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.029 0.971 36 H 0.067 0.933 37 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -15.217 1.212 0.731 15.283 hybrid contribution 0.799 -0.604 -1.207 1.568 sum -14.418 0.607 -0.475 14.438 Atomic orbital electron populations 1.23332 0.76768 1.05314 1.02199 1.86107 1.23262 1.26490 1.88966 1.19575 0.91311 0.85647 0.99060 1.21122 1.00546 0.90574 1.10907 1.20066 0.93325 0.96038 0.96629 1.20806 0.99202 0.92888 1.03314 1.21121 0.93571 0.98084 1.05860 1.20761 0.97873 0.91811 0.93886 1.17112 0.85561 0.93579 0.94112 1.21749 1.02466 0.96378 0.97344 1.21661 1.02164 0.98349 0.95188 1.21061 0.91370 1.32646 1.08568 0.93609 1.25502 0.97302 0.96367 0.98391 1.69940 1.02764 1.44743 1.37192 0.85751 0.77658 0.79106 0.80246 1.20719 1.21436 1.19395 1.17843 0.86499 0.86809 1.08718 1.84779 1.72268 1.39461 1.33278 0.91769 0.91628 0.86520 0.82602 0.89903 0.91017 0.89789 0.85282 0.95259 0.92125 0.95146 0.94862 0.91928 0.97120 0.93270 0.76279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.33 -11.12 10.28 -79.63 -0.82 -11.94 16 3 C 0.09 3.30 6.70 22.57 0.15 3.45 16 4 C -0.21 -6.44 8.69 22.35 0.19 -6.24 16 5 C -0.06 -1.86 5.88 -19.86 -0.12 -1.98 16 6 C -0.11 -2.22 10.01 71.23 0.71 -1.51 16 7 C -0.17 -6.42 8.63 22.27 0.19 -6.22 16 8 C -0.04 -1.91 4.73 -19.78 -0.09 -2.01 16 9 C 0.10 4.82 0.48 -53.67 -0.03 4.80 16 10 C -0.12 -5.84 6.92 71.98 0.50 -5.34 16 11 C -0.12 -5.99 8.06 71.98 0.58 -5.41 16 12 C -0.50 -26.56 6.71 25.60 0.17 -26.39 16 13 H 0.05 2.42 6.71 -2.91 -0.02 2.41 16 14 C 0.02 1.24 5.15 84.66 0.44 1.67 16 15 N -0.91 -50.58 9.35 21.45 0.20 -50.38 16 16 Si 0.95 43.16 29.54 68.60 2.03 45.19 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 20 C 0.05 2.04 6.17 22.57 0.14 2.18 16 21 O -0.49 -22.25 10.30 -79.65 -0.82 -23.07 16 22 H 0.06 1.13 7.67 -2.39 -0.02 1.12 16 23 H 0.07 1.14 7.66 -2.39 -0.02 1.12 16 24 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.16 3.46 6.30 -2.91 -0.02 3.44 16 26 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.07 1.45 8.08 -2.38 -0.02 1.43 16 28 H 0.08 1.38 8.08 -2.39 -0.02 1.36 16 29 H 0.13 4.72 5.89 -2.91 -0.02 4.70 16 30 H 0.03 1.25 7.36 -2.39 -0.02 1.23 16 31 H 0.06 3.20 6.10 -2.38 -0.01 3.19 16 32 H 0.03 1.39 7.67 -2.39 -0.02 1.37 16 33 H 0.03 1.74 6.41 -2.39 -0.02 1.72 16 34 H 0.06 3.47 6.04 -2.39 -0.01 3.46 16 35 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 37 H 0.38 15.89 8.02 -74.06 -0.59 15.30 16 Total: -1.00 -63.71 293.45 5.03 -58.68 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.49 Total: 23.04 kcal Atomic # 6 Polarization: -45.48 SS G_CDS: 3.95 Total: -41.53 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.20 Total: -50.38 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -1.64 Total: -35.00 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -63.71 5.03 -58.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260139206.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.277 kcal (2) G-P(sol) polarization free energy of solvation -63.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds