Wall clock time and date at job start Mon Mar 30 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36000 * 116.99970 * 2 1 4 4 C 1.38564 * 120.07412 * 270.27171 * 3 2 1 5 5 C 1.50701 * 119.99598 * 0.02562 * 4 3 2 6 6 C 1.38239 * 119.99908 * 180.25322 * 4 3 2 7 7 C 1.50701 * 119.92447 * 179.76813 * 6 4 3 8 8 C 1.52997 * 109.47212 * 84.72457 * 7 6 4 9 9 C 1.50697 * 109.47466 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99890 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99563 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00432 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46616 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47104 * 119.99966 * 13 11 9 16 16 H 1.48489 * 109.47200 * 240.00246 * 13 11 9 17 17 C 1.38248 * 120.14710 * 359.49125 * 6 4 3 18 18 C 1.38240 * 120.14662 * 0.23603 * 17 6 4 19 19 C 1.50700 * 120.00236 * 180.02562 * 18 17 6 20 20 C 1.38562 * 120.00032 * 0.02562 * 18 17 6 21 21 O 1.35997 * 120.07489 * 179.97438 * 20 18 17 22 22 H 1.09002 * 109.47114 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47432 * 300.00284 * 1 2 3 24 24 H 1.08998 * 109.46889 * 60.00529 * 1 2 3 25 25 H 1.09000 * 109.47209 * 270.24598 * 5 4 3 26 26 H 1.08999 * 109.47873 * 30.25300 * 5 4 3 27 27 H 1.09005 * 109.46991 * 150.25669 * 5 4 3 28 28 H 1.09002 * 109.47060 * 204.72512 * 7 6 4 29 29 H 1.09001 * 109.47380 * 324.72600 * 7 6 4 30 30 H 1.09002 * 109.47153 * 299.99998 * 8 7 6 31 31 H 1.08998 * 109.47533 * 59.99628 * 8 7 6 32 32 H 0.97002 * 119.99731 * 180.02562 * 12 11 9 33 33 H 1.08002 * 119.92503 * 180.25103 * 17 6 4 34 34 H 1.09005 * 109.46908 * 89.99576 * 19 18 17 35 35 H 1.08999 * 109.47432 * 209.99617 * 19 18 17 36 36 H 1.09005 * 109.46958 * 329.99905 * 19 18 17 37 37 H 0.96698 * 113.99781 * 90.00711 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 2.3566 1.8330 -1.1991 5 6 2.0092 1.1662 -2.5051 6 6 2.9889 3.0624 -1.1973 7 6 3.3301 3.7341 -2.5024 8 6 2.1156 4.5164 -3.0063 9 6 2.4570 5.1887 -4.3110 10 1 3.4416 5.0695 -4.7385 11 6 1.5121 5.9550 -4.9597 12 7 0.3128 6.0997 -4.4395 13 14 1.9354 6.7889 -6.5767 14 1 3.3387 6.4717 -6.9446 15 1 1.0224 6.2988 -7.6404 16 1 1.7816 8.2586 -6.4309 17 6 3.3037 3.6795 -0.0009 18 6 2.9920 3.0677 1.1989 19 6 3.3361 3.7436 2.5011 20 6 2.3631 1.8330 1.2042 21 8 2.0562 1.2296 2.3837 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 2.8391 0.5351 -2.8229 26 1 1.1166 0.5542 -2.3746 27 1 1.8206 1.9269 -3.2626 28 1 4.1656 4.4178 -2.3516 29 1 3.6067 2.9791 -3.2383 30 1 1.2801 3.8328 -3.1571 31 1 1.8389 5.2714 -2.2704 32 1 -0.3521 6.6385 -4.8960 33 1 3.7941 4.6417 -0.0037 34 1 2.5034 4.3731 2.8150 35 1 3.5278 2.9881 3.2631 36 1 4.2261 4.3586 2.3672 37 1 1.1802 1.4560 2.7251 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260142177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:22 Heat of formation + Delta-G solvation = -81.588505 kcal Electronic energy + Delta-G solvation = -18397.859996 eV Core-core repulsion = 15525.893381 eV Total energy + Delta-G solvation = -2871.966614 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.32950 -37.53073 -37.08424 -34.00128 -32.80241 -31.24434 -29.11103 -28.56358 -26.76631 -25.13228 -24.29153 -22.02533 -21.11358 -19.71233 -17.87286 -16.87633 -16.62209 -16.24930 -15.62645 -14.83350 -14.51346 -14.24316 -13.57684 -13.39682 -13.22405 -12.87177 -12.79891 -12.40674 -12.15811 -12.03321 -11.86473 -11.49008 -11.43586 -11.22722 -10.97034 -10.68347 -10.58884 -10.50461 -9.86208 -9.66232 -9.54142 -9.09349 -8.38661 -8.18413 -7.88783 -6.03712 -4.06646 1.42910 1.51452 3.28708 3.36554 3.40465 3.61289 4.01053 4.34256 4.43223 5.00134 5.18898 5.28811 5.32235 5.37129 5.43257 5.50664 5.57334 5.68088 5.70325 5.82293 5.90574 6.01523 6.09042 6.26676 6.29089 6.53131 6.61827 6.62357 6.70871 6.87091 7.04216 7.11480 7.43460 7.64991 7.76328 7.94131 7.96402 8.36525 9.00563 9.57795 11.07262 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027291 B = 0.005469 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.722320 B = 5118.080589 C = 5663.850050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.328 6.328 3 C 0.069 3.931 4 C -0.090 4.090 5 C -0.116 4.116 6 C -0.049 4.049 7 C -0.080 4.080 8 C 0.030 3.970 9 C -0.521 4.521 10 H 0.057 0.943 11 C 0.057 3.943 12 N -0.894 5.894 13 Si 0.891 3.109 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.108 4.108 18 C -0.106 4.106 19 C -0.107 4.107 20 C 0.067 3.933 21 O -0.487 6.487 22 H 0.091 0.909 23 H 0.039 0.961 24 H 0.049 0.951 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.020 0.980 31 H 0.017 0.983 32 H 0.260 0.740 33 H 0.128 0.872 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.260 -8.206 11.174 13.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.245 6.245 3 C 0.025 3.975 4 C -0.091 4.091 5 C -0.172 4.172 6 C -0.049 4.049 7 C -0.118 4.118 8 C -0.007 4.007 9 C -0.559 4.559 10 H 0.075 0.925 11 C -0.144 4.144 12 N -0.534 5.534 13 Si 0.719 3.281 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.126 4.126 18 C -0.106 4.106 19 C -0.164 4.164 20 C 0.022 3.978 21 O -0.296 6.296 22 H 0.109 0.891 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.106 0.894 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.038 0.962 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.146 0.854 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 1.736 -8.553 11.086 14.109 hybrid contribution -0.628 0.887 -0.752 1.322 sum 1.108 -7.666 10.334 12.915 Atomic orbital electron populations 1.22934 0.79776 1.02775 1.00559 1.86069 1.19279 1.24760 1.94354 1.18769 0.99759 0.87405 0.91523 1.19979 0.99881 0.94530 0.94680 1.20814 1.01166 1.00818 0.94400 1.20180 0.95202 0.92839 0.96680 1.20865 1.01179 0.98662 0.91070 1.19089 0.91483 0.94467 0.95676 1.21287 0.98529 1.29955 1.06175 0.92490 1.25018 0.95030 0.96547 0.97777 1.69981 1.04135 1.40125 1.39137 0.86545 0.78522 0.79272 0.83737 1.19684 1.21014 1.21020 1.20921 1.01102 0.99910 0.90709 1.20014 1.00836 0.93600 0.96175 1.20637 1.01561 1.00059 0.94129 1.18396 1.03006 0.91850 0.84519 1.84858 1.38511 1.70541 1.35671 0.89099 0.94212 0.93215 0.91363 0.92129 0.89376 0.92034 0.91727 0.96201 0.96471 0.93042 0.85417 0.91517 0.91230 0.91482 0.76876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.76 101.05 1.09 1.50 16 2 O -0.33 -5.22 9.42 -34.24 -0.32 -5.54 16 3 C 0.07 1.18 5.71 -39.12 -0.22 0.96 16 4 C -0.09 -1.62 5.89 -104.50 -0.62 -2.24 16 5 C -0.12 -1.94 8.99 36.01 0.32 -1.62 16 6 C -0.05 -0.91 5.13 -104.62 -0.54 -1.45 16 7 C -0.08 -1.64 4.58 -27.88 -0.13 -1.77 16 8 C 0.03 0.75 4.76 -27.89 -0.13 0.62 16 9 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 10 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 13 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 C -0.11 -1.83 9.32 -39.58 -0.37 -2.20 16 18 C -0.11 -1.63 5.89 -104.50 -0.62 -2.24 16 19 C -0.11 -1.29 9.79 36.01 0.35 -0.93 16 20 C 0.07 1.07 6.69 -39.12 -0.26 0.81 16 21 O -0.49 -6.70 12.33 -34.23 -0.42 -7.12 16 22 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.62 7.22 -51.93 -0.38 0.24 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.06 0.93 6.29 -51.93 -0.33 0.60 16 27 H 0.09 1.63 5.39 -51.93 -0.28 1.35 16 28 H 0.06 1.21 8.05 -51.93 -0.42 0.79 16 29 H 0.06 1.28 7.00 -51.93 -0.36 0.92 16 30 H 0.02 0.53 6.88 -51.93 -0.36 0.17 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.80 7.53 -51.93 -0.39 0.41 16 36 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 37 H 0.38 3.49 9.06 45.56 0.41 3.91 16 LS Contribution 308.32 15.07 4.65 4.65 Total: -1.00 -31.61 308.32 -6.51 -38.12 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -4.60 Total: 1.07 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -1.53 Total: -21.73 kcal Atomic # 7 Polarization: -26.46 SS G_CDS: 0.74 Total: -25.72 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -0.74 Total: -12.66 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.61 -6.51 -38.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260142177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.469 kcal (2) G-P(sol) polarization free energy of solvation -31.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds