Wall clock time and date at job start Mon Mar 30 2020 05:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35905 * 116.99783 * 2 1 4 4 C 1.38650 * 120.02655 * 359.97438 * 3 2 1 5 5 C 1.38612 * 119.89114 * 180.02562 * 4 3 2 6 6 O 1.35903 * 120.03166 * 180.02562 * 5 4 3 7 7 C 1.38802 * 119.94423 * 0.02562 * 5 4 3 8 8 C 1.50702 * 119.97118 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47495 * 60.02288 * 8 7 5 10 10 C 1.53003 * 109.46630 * 180.02562 * 8 7 5 11 11 C 1.50698 * 109.47087 * 300.01845 * 8 7 5 12 12 H 1.08005 * 119.99649 * 0.02562 * 11 8 7 13 13 C 1.37880 * 120.00382 * 180.02562 * 11 8 7 14 14 N 1.31523 * 119.99305 * 0.02562 * 13 11 8 15 15 Si 1.86798 * 120.00274 * 180.02562 * 13 11 8 16 16 H 1.48504 * 109.47117 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46800 * 119.99819 * 15 13 11 18 18 H 1.48504 * 109.46788 * 239.99999 * 15 13 11 19 19 C 1.38148 * 120.05285 * 0.02562 * 7 5 4 20 20 C 1.38205 * 120.11269 * 359.97438 * 19 7 5 21 21 C 1.50694 * 119.97373 * 179.72474 * 20 19 7 22 22 H 1.09000 * 109.47009 * 59.99687 * 1 2 3 23 23 H 1.08994 * 109.46763 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47072 * 299.99993 * 1 2 3 25 25 H 1.08002 * 120.05591 * 0.04854 * 4 3 2 26 26 H 0.96696 * 113.99637 * 269.98116 * 6 5 4 27 27 H 1.09000 * 109.47141 * 59.99555 * 9 8 7 28 28 H 1.08999 * 109.46946 * 180.02562 * 9 8 7 29 29 H 1.09003 * 109.46502 * 299.99896 * 9 8 7 30 30 H 1.09001 * 109.47058 * 60.00097 * 10 8 7 31 31 H 1.08999 * 109.46748 * 179.97438 * 10 8 7 32 32 H 1.09000 * 109.46992 * 299.99824 * 10 8 7 33 33 H 0.96999 * 119.99216 * 180.02562 * 14 13 11 34 34 H 1.08002 * 119.94413 * 179.97438 * 19 7 5 35 35 H 1.08999 * 109.46921 * 89.99943 * 21 20 19 36 36 H 1.08998 * 109.47093 * 210.00169 * 21 20 19 37 37 H 1.08997 * 109.47219 * 330.00107 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3741 -0.0005 5 6 1.9235 3.6077 -0.0011 6 8 1.1866 4.7496 -0.0011 7 6 3.3098 3.6757 -0.0016 8 6 3.9978 5.0166 -0.0028 9 6 3.5898 5.8003 1.2463 10 6 5.5140 4.8117 -0.0038 11 6 3.5942 5.7871 -1.2334 12 1 2.9078 5.3498 -1.9434 13 6 4.1011 7.0504 -1.4529 14 7 4.9373 7.5827 -0.5885 15 14 3.6003 8.0058 -2.9780 16 1 2.6569 7.1909 -3.7850 17 1 2.9399 9.2729 -2.5735 18 1 4.8066 8.3128 -3.7880 19 6 4.0595 2.5153 -0.0021 20 6 3.4315 1.2842 -0.0016 21 6 4.2523 0.0204 -0.0085 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3632 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.2127 2.3191 -0.0002 26 1 0.9733 5.0799 -0.8845 27 1 3.8817 5.2429 2.1364 28 1 4.0870 6.7702 1.2451 29 1 2.5096 5.9461 1.2469 30 1 5.8046 4.2535 -0.8938 31 1 6.0116 5.7815 -0.0051 32 1 5.8059 4.2543 0.8862 33 1 5.2937 8.4716 -0.7428 34 1 5.1381 2.5703 -0.0030 35 1 4.4554 -0.2865 1.0175 36 1 3.7013 -0.7679 -0.5212 37 1 5.1940 0.2015 -0.5266 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260147885.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:29 Heat of formation + Delta-G solvation = -64.062523 kcal Electronic energy + Delta-G solvation = -19042.391038 eV Core-core repulsion = 16171.184408 eV Total energy + Delta-G solvation = -2871.206631 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.99394 -38.12000 -35.80593 -34.90684 -31.63845 -31.03579 -28.48116 -27.24808 -26.08933 -25.21691 -25.00542 -21.98542 -20.97517 -18.75716 -18.19410 -16.42202 -16.30035 -15.51975 -15.35931 -14.99656 -14.09201 -13.87348 -13.80070 -13.29467 -13.04125 -12.79862 -12.17802 -12.11553 -11.60745 -11.47766 -11.40288 -11.18967 -10.97639 -10.70633 -10.63100 -10.44172 -10.25827 -10.24187 -10.06518 -9.43665 -9.13759 -8.76174 -8.32018 -8.08417 -7.21137 -5.96167 -4.06273 1.84857 2.09540 3.27135 3.36025 3.37388 3.57949 4.24191 4.42807 4.99075 5.19058 5.25509 5.27294 5.31879 5.47984 5.54112 5.70398 5.98155 5.98923 6.02130 6.17858 6.33136 6.61706 6.72715 6.79981 6.87416 6.94290 7.09042 7.19794 7.32152 7.43442 7.50061 7.70275 7.74098 7.80010 8.17426 8.21599 8.45775 8.53157 8.91039 9.57404 11.04484 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028405 B = 0.007031 C = 0.006415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.503779 B = 3981.362125 C = 4363.499944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.320 6.320 3 C 0.108 3.892 4 C -0.238 4.238 5 C 0.145 3.855 6 O -0.485 6.485 7 C -0.082 4.082 8 C 0.105 3.895 9 C -0.129 4.129 10 C -0.135 4.135 11 C -0.493 4.493 12 H 0.050 0.950 13 C 0.066 3.934 14 N -0.884 5.884 15 Si 0.889 3.111 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.084 4.084 20 C -0.133 4.133 21 C -0.097 4.097 22 H 0.051 0.949 23 H 0.092 0.908 24 H 0.051 0.949 25 H 0.122 0.878 26 H 0.387 0.613 27 H 0.002 0.998 28 H 0.081 0.919 29 H 0.046 0.954 30 H 0.027 0.973 31 H 0.086 0.914 32 H 0.011 0.989 33 H 0.259 0.741 34 H 0.132 0.868 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.263 -10.881 0.577 12.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.234 6.234 3 C 0.064 3.936 4 C -0.257 4.257 5 C 0.100 3.900 6 O -0.296 6.296 7 C -0.082 4.082 8 C 0.105 3.895 9 C -0.186 4.186 10 C -0.192 4.192 11 C -0.531 4.531 12 H 0.068 0.932 13 C -0.135 4.135 14 N -0.522 5.522 15 Si 0.717 3.283 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.212 1.212 19 C -0.102 4.102 20 C -0.133 4.133 21 C -0.154 4.154 22 H 0.069 0.931 23 H 0.111 0.889 24 H 0.070 0.930 25 H 0.140 0.860 26 H 0.244 0.756 27 H 0.021 0.979 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.150 0.850 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.046 -10.949 1.207 12.116 hybrid contribution -0.663 0.808 -1.383 1.734 sum -5.709 -10.141 -0.176 11.639 Atomic orbital electron populations 1.22929 0.79422 1.02989 1.01163 1.85998 1.20485 1.27335 1.89629 1.18425 0.91478 0.83340 1.00346 1.21351 0.99659 0.92253 1.12414 1.18015 0.89386 0.84664 0.97943 1.84716 1.72233 1.39333 1.33272 1.20976 0.92685 0.97660 0.96900 1.17091 0.91038 0.86200 0.95165 1.21843 1.00755 1.01788 0.94231 1.21924 0.98872 1.02112 0.96330 1.20911 1.26990 0.99902 1.05306 0.93170 1.24882 0.95018 0.97356 0.96244 1.69833 1.31307 1.16039 1.35065 0.86588 0.78352 0.80029 0.83284 1.19989 1.21085 1.21154 1.20925 1.00236 0.90063 0.99006 1.19190 0.90296 0.96018 1.07843 1.20507 0.98630 0.94696 1.01522 0.93076 0.88929 0.93038 0.85987 0.75623 0.97904 0.90007 0.93512 0.95364 0.89585 0.96996 0.93111 0.84998 0.92131 0.91883 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.32 -4.94 9.53 -19.44 -0.19 -5.12 16 3 C 0.11 1.91 6.66 -39.24 -0.26 1.65 16 4 C -0.24 -4.29 8.97 -39.29 -0.35 -4.64 16 5 C 0.14 2.98 6.19 -39.24 -0.24 2.74 16 6 O -0.48 -9.81 10.36 -19.44 -0.20 -10.01 16 7 C -0.08 -1.79 4.73 -104.45 -0.49 -2.28 16 8 C 0.11 2.55 0.48 -156.81 -0.08 2.47 16 9 C -0.13 -3.18 8.03 37.16 0.30 -2.88 16 10 C -0.13 -3.19 6.91 37.16 0.26 -2.93 16 11 C -0.49 -12.69 6.80 -34.44 -0.23 -12.92 16 12 H 0.05 1.28 7.07 -52.48 -0.37 0.91 16 13 C 0.07 1.73 5.15 -17.81 -0.09 1.64 16 14 N -0.88 -23.87 9.35 55.43 0.52 -23.35 16 15 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 C -0.08 -1.67 8.62 -39.63 -0.34 -2.01 16 20 C -0.13 -2.38 5.89 -104.45 -0.62 -2.99 16 21 C -0.10 -1.40 9.79 36.00 0.35 -1.05 16 22 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 23 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 25 H 0.12 1.91 6.30 -52.49 -0.33 1.58 16 26 H 0.39 6.82 8.29 45.56 0.38 7.19 16 27 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 28 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 29 H 0.05 1.15 6.13 -51.93 -0.32 0.83 16 30 H 0.03 0.63 7.51 -51.93 -0.39 0.24 16 31 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 32 H 0.01 0.24 7.51 -51.93 -0.39 -0.15 16 33 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 34 H 0.13 2.49 5.88 -52.49 -0.31 2.18 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.87 7.52 -51.93 -0.39 0.48 16 37 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 LS Contribution 292.64 15.07 4.41 4.41 Total: -1.00 -28.62 292.64 -5.66 -34.28 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -4.37 Total: 6.23 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -0.81 Total: -21.88 kcal Atomic # 7 Polarization: -23.87 SS G_CDS: 0.52 Total: -23.35 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.39 Total: -15.13 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.62 -5.66 -34.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260147885.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.783 kcal (2) G-P(sol) polarization free energy of solvation -28.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds