Wall clock time and date at job start Mon Mar 30 2020 05:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35905 * 116.99783 * 2 1 4 4 C 1.38650 * 120.02655 * 359.97438 * 3 2 1 5 5 C 1.38612 * 119.89114 * 180.02562 * 4 3 2 6 6 O 1.35903 * 120.03166 * 180.02562 * 5 4 3 7 7 C 1.38802 * 119.94423 * 0.02562 * 5 4 3 8 8 C 1.50702 * 119.97118 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47495 * 60.02288 * 8 7 5 10 10 C 1.53003 * 109.46630 * 180.02562 * 8 7 5 11 11 C 1.50698 * 109.47087 * 300.01845 * 8 7 5 12 12 H 1.08005 * 119.99649 * 0.02562 * 11 8 7 13 13 C 1.37880 * 120.00382 * 180.02562 * 11 8 7 14 14 N 1.31523 * 119.99305 * 0.02562 * 13 11 8 15 15 Si 1.86798 * 120.00274 * 180.02562 * 13 11 8 16 16 H 1.48504 * 109.47117 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46800 * 119.99819 * 15 13 11 18 18 H 1.48504 * 109.46788 * 239.99999 * 15 13 11 19 19 C 1.38148 * 120.05285 * 0.02562 * 7 5 4 20 20 C 1.38205 * 120.11269 * 359.97438 * 19 7 5 21 21 C 1.50694 * 119.97373 * 179.72474 * 20 19 7 22 22 H 1.09000 * 109.47009 * 59.99687 * 1 2 3 23 23 H 1.08994 * 109.46763 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47072 * 299.99993 * 1 2 3 25 25 H 1.08002 * 120.05591 * 0.04854 * 4 3 2 26 26 H 0.96696 * 113.99637 * 269.98116 * 6 5 4 27 27 H 1.09000 * 109.47141 * 59.99555 * 9 8 7 28 28 H 1.08999 * 109.46946 * 180.02562 * 9 8 7 29 29 H 1.09003 * 109.46502 * 299.99896 * 9 8 7 30 30 H 1.09001 * 109.47058 * 60.00097 * 10 8 7 31 31 H 1.08999 * 109.46748 * 179.97438 * 10 8 7 32 32 H 1.09000 * 109.46992 * 299.99824 * 10 8 7 33 33 H 0.96999 * 119.99216 * 180.02562 * 14 13 11 34 34 H 1.08002 * 119.94413 * 179.97438 * 19 7 5 35 35 H 1.08999 * 109.46921 * 89.99943 * 21 20 19 36 36 H 1.08998 * 109.47093 * 210.00169 * 21 20 19 37 37 H 1.08997 * 109.47219 * 330.00107 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3741 -0.0005 5 6 1.9235 3.6077 -0.0011 6 8 1.1866 4.7496 -0.0011 7 6 3.3098 3.6757 -0.0016 8 6 3.9978 5.0166 -0.0028 9 6 3.5898 5.8003 1.2463 10 6 5.5140 4.8117 -0.0038 11 6 3.5942 5.7871 -1.2334 12 1 2.9078 5.3498 -1.9434 13 6 4.1011 7.0504 -1.4529 14 7 4.9373 7.5827 -0.5885 15 14 3.6003 8.0058 -2.9780 16 1 2.6569 7.1909 -3.7850 17 1 2.9399 9.2729 -2.5735 18 1 4.8066 8.3128 -3.7880 19 6 4.0595 2.5153 -0.0021 20 6 3.4315 1.2842 -0.0016 21 6 4.2523 0.0204 -0.0085 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3632 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.2127 2.3191 -0.0002 26 1 0.9733 5.0799 -0.8845 27 1 3.8817 5.2429 2.1364 28 1 4.0870 6.7702 1.2451 29 1 2.5096 5.9461 1.2469 30 1 5.8046 4.2535 -0.8938 31 1 6.0116 5.7815 -0.0051 32 1 5.8059 4.2543 0.8862 33 1 5.2937 8.4716 -0.7428 34 1 5.1381 2.5703 -0.0030 35 1 4.4554 -0.2865 1.0175 36 1 3.7013 -0.7679 -0.5212 37 1 5.1940 0.2015 -0.5266 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260147885.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:29 Heat of formation + Delta-G solvation = -81.130496 kcal Electronic energy + Delta-G solvation = -19043.131161 eV Core-core repulsion = 16171.184408 eV Total energy + Delta-G solvation = -2871.946753 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.39139 -39.50787 -37.34877 -36.57088 -33.42459 -32.48016 -29.97238 -28.30933 -27.84068 -27.18242 -26.53068 -23.51043 -22.41859 -20.49032 -19.60775 -18.11007 -17.70809 -16.91136 -16.87477 -16.59381 -15.57145 -15.48247 -15.10963 -14.86549 -14.48498 -14.21858 -13.75007 -13.48198 -13.19950 -13.02973 -12.81285 -12.71090 -12.62846 -12.50573 -12.24457 -12.10903 -11.98761 -11.92192 -11.62238 -11.27580 -10.89059 -10.61202 -10.30042 -9.52436 -8.68485 -7.93739 -6.09584 0.40066 0.62640 1.43538 1.47460 1.55324 2.44527 2.47878 2.80949 3.28054 3.57608 3.96123 4.13901 4.27698 4.36733 4.41977 4.57042 4.70751 4.76344 4.82627 4.89378 4.90961 4.95595 5.04938 5.10833 5.16916 5.29843 5.42057 5.52172 5.59599 5.68103 5.73408 5.83704 5.92137 6.23308 6.30076 6.49469 6.49880 6.93108 7.05528 7.56178 9.04905 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028405 B = 0.007031 C = 0.006415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.503779 B = 3981.362125 C = 4363.499944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.324 6.324 3 C 0.114 3.886 4 C -0.235 4.235 5 C 0.128 3.872 6 O -0.495 6.495 7 C -0.114 4.114 8 C 0.101 3.899 9 C -0.118 4.118 10 C -0.125 4.125 11 C -0.498 4.498 12 H 0.048 0.952 13 C 0.022 3.978 14 N -0.907 5.907 15 Si 0.946 3.054 16 H -0.268 1.268 17 H -0.286 1.286 18 H -0.288 1.288 19 C -0.091 4.091 20 C -0.137 4.137 21 C -0.094 4.094 22 H 0.058 0.942 23 H 0.125 0.875 24 H 0.056 0.944 25 H 0.145 0.855 26 H 0.394 0.606 27 H 0.007 0.993 28 H 0.058 0.942 29 H 0.039 0.961 30 H 0.029 0.971 31 H 0.060 0.940 32 H 0.026 0.974 33 H 0.257 0.743 34 H 0.135 0.865 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.326 -12.891 0.087 14.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.238 6.238 3 C 0.069 3.931 4 C -0.254 4.254 5 C 0.083 3.917 6 O -0.307 6.307 7 C -0.114 4.114 8 C 0.100 3.900 9 C -0.175 4.175 10 C -0.183 4.183 11 C -0.536 4.536 12 H 0.066 0.934 13 C -0.177 4.177 14 N -0.547 5.547 15 Si 0.773 3.227 16 H -0.192 1.192 17 H -0.212 1.212 18 H -0.214 1.214 19 C -0.109 4.109 20 C -0.138 4.138 21 C -0.150 4.150 22 H 0.076 0.924 23 H 0.143 0.857 24 H 0.075 0.925 25 H 0.163 0.837 26 H 0.252 0.748 27 H 0.026 0.974 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.066 0.934 34 H 0.153 0.847 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.124 -12.976 0.712 14.366 hybrid contribution -0.408 1.309 -1.200 1.823 sum -6.532 -11.666 -0.488 13.379 Atomic orbital electron populations 1.23290 0.77046 1.05425 1.01742 1.86006 1.22861 1.25899 1.89078 1.18551 0.91669 0.84068 0.98790 1.21509 1.00923 0.91401 1.11581 1.18170 0.89135 0.85481 0.98879 1.84680 1.72182 1.39781 1.34074 1.20858 0.93572 0.97048 0.99964 1.17030 0.91350 0.87545 0.94043 1.21698 0.99909 1.00786 0.95150 1.21781 0.98642 1.00785 0.97073 1.21146 1.26522 1.00121 1.05805 0.93408 1.25526 0.95243 0.98312 0.98574 1.69968 1.32208 1.16129 1.36390 0.85696 0.77862 0.78696 0.80446 1.19201 1.21212 1.21411 1.20982 1.00378 0.90312 0.99257 1.19531 0.91088 0.96581 1.06596 1.20555 0.98679 0.93150 1.02649 0.92377 0.85715 0.92515 0.83697 0.74825 0.97434 0.92366 0.94172 0.95192 0.92160 0.95536 0.93371 0.84744 0.90823 0.90999 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.48 16 2 O -0.32 -8.91 9.53 -92.48 -0.88 -9.79 16 3 C 0.11 3.75 6.66 22.49 0.15 3.90 16 4 C -0.24 -8.03 8.97 22.46 0.20 -7.82 16 5 C 0.13 5.18 6.19 22.49 0.14 5.32 16 6 O -0.50 -19.96 10.36 -92.46 -0.96 -20.92 16 7 C -0.11 -4.96 4.73 -19.75 -0.09 -5.05 16 8 C 0.10 4.91 0.48 -53.67 -0.03 4.88 16 9 C -0.12 -5.94 8.03 71.98 0.58 -5.36 16 10 C -0.13 -5.98 6.91 71.98 0.50 -5.48 16 11 C -0.50 -25.83 6.80 25.60 0.17 -25.65 16 12 H 0.05 2.44 7.07 -2.91 -0.02 2.42 16 13 C 0.02 1.16 5.15 84.65 0.44 1.59 16 14 N -0.91 -50.03 9.35 21.45 0.20 -49.83 16 15 Si 0.95 42.29 29.54 68.60 2.03 44.31 16 16 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 17 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 19 C -0.09 -3.52 8.62 22.24 0.19 -3.33 16 20 C -0.14 -4.63 5.89 -19.75 -0.12 -4.74 16 21 C -0.09 -2.44 9.79 71.23 0.70 -1.74 16 22 H 0.06 1.03 7.66 -2.39 -0.02 1.01 16 23 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.06 1.03 7.66 -2.38 -0.02 1.01 16 25 H 0.15 4.15 6.30 -2.91 -0.02 4.13 16 26 H 0.39 13.89 8.29 -74.06 -0.61 13.28 16 27 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.06 3.18 6.07 -2.39 -0.01 3.16 16 29 H 0.04 2.01 6.13 -2.39 -0.01 2.00 16 30 H 0.03 1.36 7.51 -2.39 -0.02 1.34 16 31 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 32 H 0.03 1.13 7.51 -2.39 -0.02 1.11 16 33 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 34 H 0.13 4.96 5.88 -2.91 -0.02 4.94 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.07 1.75 7.52 -2.39 -0.02 1.73 16 37 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 Total: -1.00 -60.66 292.64 4.80 -55.87 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 0.47 Total: 22.37 kcal Atomic # 6 Polarization: -45.95 SS G_CDS: 3.94 Total: -42.01 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 0.20 Total: -49.83 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -1.84 Total: -30.71 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -60.66 4.80 -55.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260147885.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.265 kcal (2) G-P(sol) polarization free energy of solvation -60.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds